Wall clock time and date at job start Mon Mar 30 2020 04:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99920 * 2 1 4 4 H 1.48504 * 109.47114 * 240.00153 * 3 2 1 5 5 H 1.48503 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47319 * 120.00096 * 3 2 1 7 7 C 1.37870 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00065 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47622 * 300.00181 * 9 7 2 11 11 N 1.46902 * 109.47323 * 60.00564 * 9 7 2 12 12 C 1.53007 * 109.46989 * 180.02562 * 9 7 2 13 13 H 1.08997 * 109.47216 * 299.99704 * 12 9 7 14 14 O 1.42900 * 109.47205 * 60.00319 * 12 9 7 15 15 C 1.50700 * 109.46989 * 180.02562 * 12 9 7 16 16 C 1.34241 * 126.50484 * 264.97735 * 15 12 9 17 17 N 1.36827 * 109.93440 * 180.02562 * 16 15 12 18 18 H 0.96995 * 125.06897 * 180.02562 * 17 16 15 19 19 C 1.37688 * 109.87190 * 359.97438 * 17 16 15 20 20 C 1.39129 * 133.51037 * 180.02562 * 19 17 16 21 21 C 1.37749 * 119.78278 * 179.97438 * 20 19 17 22 22 C 1.38836 * 120.66196 * 359.76812 * 21 20 19 23 23 C 1.36617 * 120.53075 * 0.50073 * 22 21 20 24 24 C 1.39636 * 119.76483 * 359.48048 * 23 22 21 25 25 H 0.96994 * 119.99831 * 0.02562 * 1 2 3 26 26 H 1.00897 * 110.99875 * 59.99327 * 11 9 7 27 27 H 1.00893 * 111.00071 * 183.95542 * 11 9 7 28 28 H 0.96706 * 113.99819 * 59.99538 * 14 12 9 29 29 H 1.07999 * 125.03258 * 0.02562 * 16 15 12 30 30 H 1.08002 * 120.10508 * 359.95443 * 20 19 17 31 31 H 1.07997 * 119.66316 * 179.97438 * 21 20 19 32 32 H 1.08001 * 119.73196 * 180.25469 * 22 21 20 33 33 H 1.08002 * 120.12126 * 179.76322 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4061 -2.5768 -1.1997 12 6 2.2454 -3.6621 -0.0005 13 1 2.8720 -3.6043 -0.8905 14 8 3.0669 -3.5864 1.1663 15 6 1.4919 -4.9672 -0.0012 16 6 1.1740 -5.7063 1.0734 17 7 0.4893 -6.8251 0.6841 18 1 0.1543 -7.5102 1.2834 19 6 0.3458 -6.8331 -0.6853 20 6 -0.2533 -7.7137 -1.5805 21 6 -0.2316 -7.4378 -2.9299 22 6 0.3788 -6.2857 -3.4072 23 6 0.9778 -5.4101 -2.5465 24 6 0.9672 -5.6698 -1.1745 25 1 -0.4849 0.8400 -0.0004 26 1 0.9638 -2.5251 -2.0390 27 1 -0.1578 -3.4133 -1.1912 28 1 2.5747 -3.6317 1.9975 29 1 1.4220 -5.4550 2.0941 30 1 -0.7336 -8.6108 -1.2185 31 1 -0.6969 -8.1228 -3.6231 32 1 0.3834 -6.0822 -4.4678 33 1 1.4540 -4.5178 -2.9254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:33 Heat of formation + Delta-G solvation = 10.724833 kcal Electronic energy + Delta-G solvation = -17659.937418 eV Core-core repulsion = 14878.889519 eV Total energy + Delta-G solvation = -2781.047899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.07122 -37.14393 -36.40701 -33.57985 -32.00240 -30.82373 -29.22091 -28.65896 -26.27004 -24.60152 -22.65002 -21.55983 -20.86148 -19.00679 -17.88451 -16.40141 -16.09745 -15.46526 -15.24705 -14.69365 -14.20509 -14.02029 -13.89407 -13.58854 -13.45705 -12.99375 -12.35301 -12.01339 -11.49294 -11.41063 -11.24976 -10.90468 -10.73930 -10.71759 -10.50841 -10.04530 -9.56700 -9.09794 -8.86194 -8.31015 -8.00280 -7.45011 -6.74492 -5.75646 -3.88903 1.33959 1.83759 2.97314 3.32060 3.42720 3.46885 3.50367 4.13132 4.57680 4.91788 5.01623 5.18747 5.28452 5.33290 5.51317 5.54182 5.68683 5.84572 5.99555 6.09502 6.17605 6.46199 6.53862 6.61959 6.70012 6.81929 6.92842 7.05976 7.36962 7.59157 7.74227 8.04681 8.26103 8.46486 8.81136 9.15008 9.30438 9.78859 11.28760 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032821 B = 0.006546 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.905286 B = 4276.488912 C = 4720.953519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.081 3.919 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.210 3.790 10 H 0.033 0.967 11 N -0.806 5.806 12 C 0.143 3.857 13 H 0.087 0.913 14 O -0.554 6.554 15 C -0.178 4.178 16 C 0.041 3.959 17 N -0.598 5.598 18 H 0.411 0.589 19 C 0.095 3.905 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.062 4.062 24 C -0.096 4.096 25 H 0.253 0.747 26 H 0.313 0.687 27 H 0.300 0.700 28 H 0.363 0.637 29 H 0.166 0.834 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -15.067 -1.223 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.125 4.125 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.100 3.900 10 H 0.051 0.949 11 N -0.334 5.334 12 C 0.081 3.919 13 H 0.104 0.896 14 O -0.356 6.356 15 C -0.185 4.185 16 C -0.084 4.084 17 N -0.201 5.201 18 H 0.247 0.753 19 C -0.013 4.013 20 C -0.158 4.158 21 C -0.121 4.121 22 C -0.172 4.172 23 C -0.081 4.081 24 C -0.101 4.101 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.208 0.792 29 H 0.183 0.817 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.655 -14.286 -1.270 14.357 hybrid contribution 0.282 -0.369 0.494 0.678 sum -0.372 -14.656 -0.777 14.681 Atomic orbital electron populations 1.70116 1.05652 1.25470 1.47392 1.24950 0.94562 0.98460 0.94489 0.86854 0.79686 0.83922 0.78465 1.20466 1.21606 1.20481 1.20879 0.92443 0.89845 1.53513 0.92536 1.19593 0.88693 0.90751 0.90973 0.94868 1.59095 1.27893 1.42388 1.04002 1.21605 0.92485 0.89790 0.88010 0.89568 1.86508 1.36896 1.96584 1.15628 1.21568 1.06069 0.99781 0.91058 1.21399 0.99511 0.88197 0.99291 1.41635 1.51024 1.22125 1.05286 0.75285 1.18268 1.01857 0.97576 0.83565 1.19932 1.04120 0.99324 0.92388 1.20726 0.99837 0.97476 0.94089 1.20573 1.01618 0.95542 0.99462 1.20384 0.97756 0.98836 0.91076 1.19056 1.02619 0.95144 0.93317 0.93676 0.87513 0.88825 0.79189 0.81657 0.86789 0.86216 0.86266 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.17 12.77 55.43 0.71 -24.46 16 2 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 3 Si 0.88 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.59 8.39 -34.44 -0.29 -14.88 16 8 H 0.06 1.59 7.70 -52.49 -0.40 1.19 16 9 C 0.21 5.14 2.43 -68.86 -0.17 4.97 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 11 N -0.81 -19.10 8.26 -5.65 -0.05 -19.15 16 12 C 0.14 2.96 3.18 -27.88 -0.09 2.87 16 13 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 14 O -0.55 -11.16 12.72 -35.23 -0.45 -11.61 16 15 C -0.18 -3.18 4.85 -102.71 -0.50 -3.68 16 16 C 0.04 0.61 11.15 -16.73 -0.19 0.42 16 17 N -0.60 -7.83 6.07 -10.65 -0.06 -7.90 16 18 H 0.41 3.87 8.96 -40.82 -0.37 3.50 16 19 C 0.09 1.43 7.28 -83.99 -0.61 0.81 16 20 C -0.14 -1.77 10.08 -39.43 -0.40 -2.16 16 21 C -0.10 -1.26 10.01 -39.54 -0.40 -1.66 16 22 C -0.15 -2.07 9.97 -39.95 -0.40 -2.46 16 23 C -0.06 -0.98 9.30 -39.65 -0.37 -1.35 16 24 C -0.10 -1.64 5.29 -105.13 -0.56 -2.20 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.31 7.13 8.37 -39.29 -0.33 6.80 16 27 H 0.30 6.68 6.67 -39.30 -0.26 6.42 16 28 H 0.36 6.06 8.10 45.56 0.37 6.43 16 29 H 0.17 2.00 7.40 -52.49 -0.39 1.61 16 30 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.92 7.44 -52.49 -0.39 1.53 16 LS Contribution 281.40 15.07 4.24 4.24 Total: -1.00 -32.45 281.40 -7.70 -40.16 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -3.02 Total: 19.11 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -4.05 Total: -17.12 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.60 Total: -51.50 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.45 Total: -11.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.45 -7.70 -40.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.884 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds