Wall clock time and date at job start Mon Mar 30 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99920 * 2 1 4 4 H 1.48504 * 109.47114 * 240.00153 * 3 2 1 5 5 H 1.48503 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47319 * 120.00096 * 3 2 1 7 7 C 1.37870 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00065 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47622 * 300.00181 * 9 7 2 11 11 N 1.46902 * 109.47323 * 60.00564 * 9 7 2 12 12 C 1.53007 * 109.46989 * 180.02562 * 9 7 2 13 13 H 1.08997 * 109.47216 * 299.99704 * 12 9 7 14 14 O 1.42900 * 109.47205 * 60.00319 * 12 9 7 15 15 C 1.50700 * 109.46989 * 180.02562 * 12 9 7 16 16 C 1.34241 * 126.50484 * 264.97735 * 15 12 9 17 17 N 1.36827 * 109.93440 * 180.02562 * 16 15 12 18 18 H 0.96995 * 125.06897 * 180.02562 * 17 16 15 19 19 C 1.37688 * 109.87190 * 359.97438 * 17 16 15 20 20 C 1.39129 * 133.51037 * 180.02562 * 19 17 16 21 21 C 1.37749 * 119.78278 * 179.97438 * 20 19 17 22 22 C 1.38836 * 120.66196 * 359.76812 * 21 20 19 23 23 C 1.36617 * 120.53075 * 0.50073 * 22 21 20 24 24 C 1.39636 * 119.76483 * 359.48048 * 23 22 21 25 25 H 0.96994 * 119.99831 * 0.02562 * 1 2 3 26 26 H 1.00897 * 110.99875 * 59.99327 * 11 9 7 27 27 H 1.00893 * 111.00071 * 183.95542 * 11 9 7 28 28 H 0.96706 * 113.99819 * 59.99538 * 14 12 9 29 29 H 1.07999 * 125.03258 * 0.02562 * 16 15 12 30 30 H 1.08002 * 120.10508 * 359.95443 * 20 19 17 31 31 H 1.07997 * 119.66316 * 179.97438 * 21 20 19 32 32 H 1.08001 * 119.73196 * 180.25469 * 22 21 20 33 33 H 1.08002 * 120.12126 * 179.76322 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4061 -2.5768 -1.1997 12 6 2.2454 -3.6621 -0.0005 13 1 2.8720 -3.6043 -0.8905 14 8 3.0669 -3.5864 1.1663 15 6 1.4919 -4.9672 -0.0012 16 6 1.1740 -5.7063 1.0734 17 7 0.4893 -6.8251 0.6841 18 1 0.1543 -7.5102 1.2834 19 6 0.3458 -6.8331 -0.6853 20 6 -0.2533 -7.7137 -1.5805 21 6 -0.2316 -7.4378 -2.9299 22 6 0.3788 -6.2857 -3.4072 23 6 0.9778 -5.4101 -2.5465 24 6 0.9672 -5.6698 -1.1745 25 1 -0.4849 0.8400 -0.0004 26 1 0.9638 -2.5251 -2.0390 27 1 -0.1578 -3.4133 -1.1912 28 1 2.5747 -3.6317 1.9975 29 1 1.4220 -5.4550 2.0941 30 1 -0.7336 -8.6108 -1.2185 31 1 -0.6969 -8.1228 -3.6231 32 1 0.3834 -6.0822 -4.4678 33 1 1.4540 -4.5178 -2.9254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938771.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:32 Heat of formation + Delta-G solvation = -14.150187 kcal Electronic energy + Delta-G solvation = -17661.016080 eV Core-core repulsion = 14878.889519 eV Total energy + Delta-G solvation = -2782.126561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.21147 -38.65070 -37.61137 -35.46442 -33.68640 -32.38355 -30.35189 -29.84630 -28.20901 -26.36037 -23.72807 -22.81364 -22.50290 -20.42187 -19.10557 -18.25231 -17.29324 -17.14998 -16.54918 -16.30268 -15.97971 -15.46332 -15.26275 -14.79639 -14.67971 -14.55510 -14.11828 -13.38308 -13.08899 -12.71461 -12.69504 -12.54623 -12.48917 -12.38669 -12.03117 -11.82919 -11.25352 -10.81233 -10.48814 -10.40888 -9.10835 -8.83035 -8.40283 -7.90448 -6.11543 0.25204 0.75405 1.45379 1.46361 1.53759 1.75824 2.28262 2.51251 3.03156 3.30485 3.72265 3.88293 3.98897 4.14503 4.28005 4.44105 4.48643 4.58491 4.67307 4.78550 4.86161 4.93961 5.05796 5.24420 5.56140 5.65058 5.74164 5.79893 5.83345 5.89302 6.25192 6.27825 6.69012 6.77334 7.02623 7.19305 7.34160 7.59923 9.11241 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032821 B = 0.006546 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.905286 B = 4276.488912 C = 4720.953519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.034 3.966 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.045 0.955 9 C 0.216 3.784 10 H 0.004 0.996 11 N -0.812 5.812 12 C 0.163 3.837 13 H 0.065 0.935 14 O -0.565 6.565 15 C -0.222 4.222 16 C 0.059 3.941 17 N -0.581 5.581 18 H 0.431 0.569 19 C 0.080 3.920 20 C -0.132 4.132 21 C -0.102 4.102 22 C -0.150 4.150 23 C -0.092 4.092 24 C -0.123 4.123 25 H 0.252 0.748 26 H 0.316 0.684 27 H 0.309 0.691 28 H 0.377 0.623 29 H 0.193 0.807 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.139 0.861 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 -16.871 -1.222 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.169 4.169 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.063 0.937 9 C 0.106 3.894 10 H 0.022 0.978 11 N -0.341 5.341 12 C 0.101 3.899 13 H 0.083 0.917 14 O -0.369 6.369 15 C -0.230 4.230 16 C -0.067 4.067 17 N -0.186 5.186 18 H 0.271 0.729 19 C -0.028 4.028 20 C -0.153 4.153 21 C -0.121 4.121 22 C -0.169 4.169 23 C -0.111 4.111 24 C -0.128 4.128 25 H 0.061 0.939 26 H 0.127 0.873 27 H 0.121 0.879 28 H 0.225 0.775 29 H 0.210 0.790 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.157 0.843 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.137 -16.126 -1.254 16.215 hybrid contribution 0.417 0.093 0.481 0.644 sum -0.719 -16.033 -0.773 16.068 Atomic orbital electron populations 1.70242 1.06958 1.26084 1.48628 1.25647 0.95345 1.01645 0.94278 0.85861 0.78468 0.80031 0.78528 1.20165 1.21214 1.19916 1.21190 0.92152 0.91655 1.52988 0.93663 1.19347 0.88807 0.91317 0.89935 0.97814 1.58951 1.28163 1.43084 1.03856 1.20971 0.91140 0.90338 0.87438 0.91720 1.86450 1.37486 1.96687 1.16314 1.21246 1.08875 0.99789 0.93059 1.21758 0.97531 0.87724 0.99716 1.41582 1.49967 1.21886 1.05131 0.72935 1.18559 1.02299 0.97519 0.84425 1.20372 1.02929 0.99716 0.92264 1.21174 0.98938 0.97285 0.94695 1.20904 1.00359 0.95357 1.00238 1.20448 0.99665 0.99556 0.91448 1.19253 1.03638 0.96267 0.93592 0.93856 0.87265 0.87867 0.77533 0.79018 0.83497 0.82670 0.84271 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.06 12.77 21.45 0.27 -52.79 16 2 C 0.03 1.93 5.39 84.65 0.46 2.39 16 3 Si 0.94 45.23 29.54 68.60 2.03 47.25 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.54 -30.65 8.39 25.60 0.21 -30.44 16 8 H 0.05 2.61 7.70 -2.91 -0.02 2.59 16 9 C 0.22 10.93 2.43 44.17 0.11 11.04 16 10 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 11 N -0.81 -39.76 8.26 -171.79 -1.42 -41.18 16 12 C 0.16 6.97 3.18 29.85 0.09 7.07 16 13 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 14 O -0.57 -23.09 12.72 -148.98 -1.89 -24.98 16 15 C -0.22 -8.02 4.85 -18.63 -0.09 -8.11 16 16 C 0.06 1.70 11.15 83.00 0.93 2.62 16 17 N -0.58 -13.85 6.07 -187.60 -1.14 -14.99 16 18 H 0.43 6.70 8.96 -92.71 -0.83 5.87 16 19 C 0.08 2.23 7.28 39.03 0.28 2.52 16 20 C -0.13 -2.97 10.08 22.37 0.23 -2.75 16 21 C -0.10 -2.19 10.01 22.30 0.22 -1.97 16 22 C -0.15 -3.82 9.97 22.03 0.22 -3.60 16 23 C -0.09 -2.96 9.30 22.23 0.21 -2.76 16 24 C -0.12 -4.17 5.29 -20.20 -0.11 -4.28 16 25 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.32 15.01 8.37 -89.70 -0.75 14.26 16 27 H 0.31 14.18 6.67 -89.70 -0.60 13.58 16 28 H 0.38 12.60 8.10 -74.05 -0.60 12.00 16 29 H 0.19 4.24 7.40 -2.91 -0.02 4.21 16 30 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.11 3.60 7.44 -2.91 -0.02 3.58 16 Total: -1.00 -70.68 281.40 -1.00 -71.68 By element: Atomic # 1 Polarization: 44.87 SS G_CDS: -1.60 Total: 43.27 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 2.76 Total: -28.26 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -2.28 Total: -108.95 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.89 Total: -24.98 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.68 -1.00 -71.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938771.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.531 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds