Wall clock time and date at job start Mon Mar 30 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48498 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47405 * 300.00159 * 3 2 1 6 6 H 1.48502 * 109.47097 * 60.00016 * 3 2 1 7 7 C 1.38872 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99582 * 186.94778 * 7 2 1 9 9 N 1.37192 * 120.00396 * 6.95144 * 7 2 1 10 10 C 1.47049 * 125.40820 * 354.19976 * 9 7 2 11 11 C 1.54101 * 103.99247 * 180.02562 * 10 9 7 12 12 N 1.47058 * 103.86197 * 359.93141 * 11 10 9 13 13 C 1.46497 * 125.41180 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.47183 * 89.99663 * 13 12 11 15 15 C 1.38229 * 119.99736 * 269.72918 * 14 13 12 16 16 C 1.38239 * 119.99882 * 179.76838 * 15 14 13 17 17 C 1.38244 * 119.99448 * 0.50276 * 16 15 14 18 18 C 1.38229 * 120.00273 * 359.74797 * 17 16 15 19 19 C 1.38230 * 119.99767 * 90.00021 * 14 13 12 20 20 C 1.33950 * 109.17792 * 359.97438 * 12 11 10 21 21 O 1.21579 * 123.04225 * 179.97438 * 20 12 11 22 22 H 0.97008 * 120.00035 * 0.02562 * 1 2 3 23 23 H 1.09005 * 110.54899 * 61.40563 * 10 9 7 24 24 H 1.09003 * 110.55049 * 298.73897 * 10 9 7 25 25 H 1.09004 * 110.54902 * 118.52334 * 11 10 9 26 26 H 1.08996 * 110.55551 * 241.19038 * 11 10 9 27 27 H 1.09002 * 109.46992 * 209.99530 * 13 12 11 28 28 H 1.08995 * 109.47125 * 329.99412 * 13 12 11 29 29 H 1.08001 * 120.00320 * 359.97438 * 15 14 13 30 30 H 1.07996 * 120.00615 * 180.22688 * 16 15 14 31 31 H 1.08001 * 119.99615 * 179.72682 * 17 16 15 32 32 H 1.07997 * 120.00221 * 179.97438 * 18 17 16 33 33 H 1.07998 * 120.00574 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.7087 1.3464 0.0006 5 1 1.8900 2.3965 -1.2125 6 1 1.8900 2.3964 1.2125 7 6 2.0091 -1.2027 0.0005 8 1 3.0831 -1.2061 0.1137 9 7 1.3307 -2.3865 -0.1427 10 6 -0.1321 -2.5307 -0.1839 11 6 -0.3525 -4.0462 -0.3555 12 7 1.0100 -4.5981 -0.3948 13 6 1.3476 -6.0155 -0.5471 14 6 1.4862 -6.3444 -2.0113 15 6 0.3862 -6.7728 -2.7305 16 6 0.5122 -7.0699 -4.0747 17 6 1.7407 -6.9485 -4.6971 18 6 2.8417 -6.5251 -3.9766 19 6 2.7145 -6.2231 -2.6336 20 6 1.8933 -3.5989 -0.2704 21 8 3.0964 -3.7738 -0.2702 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5465 -1.9860 -1.0323 24 1 -0.5774 -2.1817 0.7478 25 1 -0.9049 -4.4509 0.4926 26 1 -0.8786 -4.2533 -1.2873 27 1 2.2890 -6.2215 -0.0378 28 1 0.5572 -6.6262 -0.1108 29 1 -0.5724 -6.8721 -2.2431 30 1 -0.3479 -7.4010 -4.6376 31 1 1.8401 -7.1849 -5.7462 32 1 3.8015 -6.4307 -4.4627 33 1 3.5749 -5.8930 -2.0706 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259950251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:04 Heat of formation + Delta-G solvation = 22.979991 kcal Electronic energy + Delta-G solvation = -17581.657430 eV Core-core repulsion = 14801.140954 eV Total energy + Delta-G solvation = -2780.516476 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92601 -38.74835 -34.97207 -34.59234 -32.29155 -30.67229 -30.49555 -28.17810 -25.91028 -24.68253 -22.42395 -21.68990 -21.19262 -19.08968 -17.34351 -16.65940 -15.61570 -15.31164 -15.25001 -14.83334 -14.69476 -14.11942 -13.35475 -13.18925 -13.04175 -12.79351 -12.50406 -12.31325 -11.61982 -11.59733 -11.47302 -11.03659 -10.97100 -10.77623 -10.71408 -10.29312 -10.16069 -9.04913 -8.84680 -8.69772 -8.52375 -8.02719 -7.62262 -6.25386 -3.71121 1.51310 1.62940 3.21359 3.28853 3.34783 3.60890 4.11100 4.30704 4.34627 5.01029 5.05511 5.17627 5.27322 5.30583 5.40791 5.49657 5.58782 5.69634 5.83645 5.84220 6.04962 6.09697 6.20217 6.27673 6.63785 6.70658 6.72678 6.94478 7.05216 7.22060 7.29534 7.56654 7.70173 8.31528 8.68674 9.28887 9.48242 10.22885 10.85211 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032105 B = 0.006116 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.929632 B = 4576.838736 C = 4772.629062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.931 3.069 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.273 4.273 8 H 0.102 0.898 9 N -0.471 5.471 10 C 0.133 3.867 11 C 0.085 3.915 12 N -0.642 5.642 13 C 0.196 3.804 14 C -0.100 4.100 15 C -0.108 4.108 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.090 4.090 20 C 0.653 3.347 21 O -0.624 6.624 22 H 0.265 0.735 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 -11.642 -4.928 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.400 4.400 8 H 0.120 0.880 9 N -0.195 5.195 10 C 0.009 3.991 11 C -0.040 4.040 12 N -0.381 5.381 13 C 0.073 3.927 14 C -0.102 4.102 15 C -0.127 4.127 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.143 4.143 19 C -0.109 4.109 20 C 0.356 3.644 21 O -0.508 6.508 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.558 -11.516 -4.880 12.766 hybrid contribution 0.036 0.937 -0.156 0.950 sum -2.522 -10.579 -5.036 11.985 Atomic orbital electron populations 1.69897 1.05578 1.27036 1.51831 1.25170 0.95823 0.99180 0.97735 0.85777 0.79543 0.81250 0.77637 1.19399 1.20786 1.20882 1.19453 0.92640 0.80632 1.47263 0.88006 1.42834 1.04956 1.04111 1.67596 1.22066 0.83757 0.89445 1.03846 1.22580 0.85013 0.95988 1.00406 1.46969 1.06516 1.05136 1.79518 1.19833 1.01766 0.80126 0.90969 1.20494 0.93581 0.98509 0.97634 1.21020 0.97961 0.99397 0.94288 1.21055 0.97364 1.01380 0.94901 1.21095 0.93201 1.00492 0.99480 1.21153 0.98673 0.99988 0.94523 1.21245 0.97892 0.97013 0.94743 1.15864 0.84858 0.81417 0.82292 1.90704 1.12698 1.84547 1.62836 0.92430 0.90222 0.90490 0.92016 0.92181 0.89660 0.90516 0.86391 0.86486 0.86585 0.86359 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.31 10.39 55.49 0.58 -23.73 16 2 C 0.02 0.57 5.48 -17.47 -0.10 0.48 16 3 Si 0.93 21.25 29.56 -169.99 -5.02 16.23 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.27 -7.83 9.93 -14.92 -0.15 -7.98 16 8 H 0.10 3.02 7.69 -52.49 -0.40 2.62 16 9 N -0.47 -12.75 3.08 -119.52 -0.37 -13.12 16 10 C 0.13 3.06 5.65 -3.17 -0.02 3.04 16 11 C 0.08 1.54 7.68 -3.16 -0.02 1.52 16 12 N -0.64 -13.17 2.94 -180.10 -0.53 -13.70 16 13 C 0.20 3.24 6.12 -5.19 -0.03 3.21 16 14 C -0.10 -1.61 5.46 -104.62 -0.57 -2.18 16 15 C -0.11 -1.49 9.70 -39.58 -0.38 -1.88 16 16 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 17 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 18 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 19 C -0.09 -1.50 9.70 -39.58 -0.38 -1.89 16 20 C 0.65 16.94 8.25 -88.12 -0.73 16.22 16 21 O -0.62 -17.94 17.04 5.30 0.09 -17.85 16 22 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 23 H 0.08 1.92 7.38 -51.93 -0.38 1.54 16 24 H 0.08 1.82 7.63 -51.93 -0.40 1.43 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.47 7.86 -51.93 -0.41 1.06 16 28 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 285.97 15.07 4.31 4.31 Total: -1.00 -32.41 285.97 -8.63 -41.04 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.11 Total: 2.52 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -3.58 Total: 4.30 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.32 Total: -50.55 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.09 Total: -17.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.41 -8.63 -41.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.020 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds