Wall clock time and date at job start Mon Mar 30 2020 04:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48498 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47405 * 300.00159 * 3 2 1 6 6 H 1.48502 * 109.47097 * 60.00016 * 3 2 1 7 7 C 1.38872 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99582 * 186.94778 * 7 2 1 9 9 N 1.37192 * 120.00396 * 6.95144 * 7 2 1 10 10 C 1.47049 * 125.40820 * 354.19976 * 9 7 2 11 11 C 1.54101 * 103.99247 * 180.02562 * 10 9 7 12 12 N 1.47058 * 103.86197 * 359.93141 * 11 10 9 13 13 C 1.46497 * 125.41180 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.47183 * 89.99663 * 13 12 11 15 15 C 1.38229 * 119.99736 * 269.72918 * 14 13 12 16 16 C 1.38239 * 119.99882 * 179.76838 * 15 14 13 17 17 C 1.38244 * 119.99448 * 0.50276 * 16 15 14 18 18 C 1.38229 * 120.00273 * 359.74797 * 17 16 15 19 19 C 1.38230 * 119.99767 * 90.00021 * 14 13 12 20 20 C 1.33950 * 109.17792 * 359.97438 * 12 11 10 21 21 O 1.21579 * 123.04225 * 179.97438 * 20 12 11 22 22 H 0.97008 * 120.00035 * 0.02562 * 1 2 3 23 23 H 1.09005 * 110.54899 * 61.40563 * 10 9 7 24 24 H 1.09003 * 110.55049 * 298.73897 * 10 9 7 25 25 H 1.09004 * 110.54902 * 118.52334 * 11 10 9 26 26 H 1.08996 * 110.55551 * 241.19038 * 11 10 9 27 27 H 1.09002 * 109.46992 * 209.99530 * 13 12 11 28 28 H 1.08995 * 109.47125 * 329.99412 * 13 12 11 29 29 H 1.08001 * 120.00320 * 359.97438 * 15 14 13 30 30 H 1.07996 * 120.00615 * 180.22688 * 16 15 14 31 31 H 1.08001 * 119.99615 * 179.72682 * 17 16 15 32 32 H 1.07997 * 120.00221 * 179.97438 * 18 17 16 33 33 H 1.07998 * 120.00574 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.7087 1.3464 0.0006 5 1 1.8900 2.3965 -1.2125 6 1 1.8900 2.3964 1.2125 7 6 2.0091 -1.2027 0.0005 8 1 3.0831 -1.2061 0.1137 9 7 1.3307 -2.3865 -0.1427 10 6 -0.1321 -2.5307 -0.1839 11 6 -0.3525 -4.0462 -0.3555 12 7 1.0100 -4.5981 -0.3948 13 6 1.3476 -6.0155 -0.5471 14 6 1.4862 -6.3444 -2.0113 15 6 0.3862 -6.7728 -2.7305 16 6 0.5122 -7.0699 -4.0747 17 6 1.7407 -6.9485 -4.6971 18 6 2.8417 -6.5251 -3.9766 19 6 2.7145 -6.2231 -2.6336 20 6 1.8933 -3.5989 -0.2704 21 8 3.0964 -3.7738 -0.2702 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5465 -1.9860 -1.0323 24 1 -0.5774 -2.1817 0.7478 25 1 -0.9049 -4.4509 0.4926 26 1 -0.8786 -4.2533 -1.2873 27 1 2.2890 -6.2215 -0.0378 28 1 0.5572 -6.6262 -0.1108 29 1 -0.5724 -6.8721 -2.2431 30 1 -0.3479 -7.4010 -4.6376 31 1 1.8401 -7.1849 -5.7462 32 1 3.8015 -6.4307 -4.4627 33 1 3.5749 -5.8930 -2.0706 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259950251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:03 Heat of formation + Delta-G solvation = 3.681445 kcal Electronic energy + Delta-G solvation = -17582.494278 eV Core-core repulsion = 14801.140954 eV Total energy + Delta-G solvation = -2781.353324 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.68058 -39.93834 -37.00583 -36.29248 -34.00489 -32.11084 -31.74528 -29.83536 -27.59005 -26.43066 -23.71178 -23.17881 -22.50773 -20.82116 -19.34747 -17.84514 -17.34205 -17.21155 -16.79238 -16.21313 -15.94585 -15.78234 -14.99672 -14.78353 -14.40956 -14.27566 -14.19672 -13.51343 -13.40624 -13.24779 -12.95068 -12.68732 -12.66958 -12.26199 -12.11808 -12.02528 -11.81633 -11.06676 -10.85139 -9.99178 -9.78233 -9.71025 -9.35589 -8.32439 -5.85685 0.39761 0.53841 1.39018 1.40828 1.54680 2.02060 2.34511 2.41278 2.99202 3.19081 3.62419 3.88383 3.92338 3.93645 4.19113 4.24879 4.30642 4.42948 4.60125 4.62679 4.76726 4.77682 4.99819 5.12865 5.20130 5.27269 5.40038 5.49896 5.58827 5.63541 5.77931 5.99883 6.16032 6.28957 6.68989 7.24276 7.47372 8.21334 8.76534 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032105 B = 0.006116 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.929632 B = 4576.838736 C = 4772.629062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.316 4.316 8 H 0.074 0.926 9 N -0.494 5.494 10 C 0.136 3.864 11 C 0.096 3.904 12 N -0.634 5.634 13 C 0.193 3.807 14 C -0.119 4.119 15 C -0.107 4.107 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.137 4.137 19 C -0.122 4.122 20 C 0.640 3.360 21 O -0.668 6.668 22 H 0.272 0.728 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 -12.467 -6.083 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.443 4.443 8 H 0.092 0.908 9 N -0.218 5.218 10 C 0.012 3.988 11 C -0.027 4.027 12 N -0.373 5.373 13 C 0.071 3.929 14 C -0.121 4.121 15 C -0.125 4.125 16 C -0.144 4.144 17 C -0.141 4.141 18 C -0.155 4.155 19 C -0.141 4.141 20 C 0.342 3.658 21 O -0.555 6.555 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.009 -12.383 -6.037 14.659 hybrid contribution 0.755 1.149 0.159 1.384 sum -4.255 -11.234 -5.879 13.374 Atomic orbital electron populations 1.69991 1.06306 1.28214 1.50543 1.25959 0.96843 1.01710 0.96368 0.84837 0.77848 0.77026 0.78365 1.20067 1.19587 1.19408 1.19406 0.92064 0.82524 1.50350 0.90784 1.43058 1.06657 1.04082 1.67993 1.22017 0.81391 0.92995 1.02387 1.22685 0.84122 0.92286 1.03615 1.47070 1.06381 1.05571 1.78253 1.20124 1.02513 0.78231 0.92005 1.20473 0.94163 1.00093 0.97338 1.21335 0.98103 0.98239 0.94822 1.21522 0.98323 0.99842 0.94709 1.21497 0.92686 0.99009 1.00865 1.21362 1.00215 1.00178 0.93773 1.21208 0.97692 0.99210 0.95989 1.16284 0.85025 0.82357 0.82090 1.90647 1.14895 1.85388 1.64547 0.91774 0.91953 0.91775 0.88070 0.89188 0.91665 0.85985 0.83514 0.82988 0.83542 0.85303 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.04 10.39 21.65 0.22 -48.82 16 2 C -0.01 -0.51 5.48 84.90 0.47 -0.04 16 3 Si 1.00 43.87 29.56 68.60 2.03 45.90 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.32 -18.92 9.93 84.01 0.83 -18.09 16 8 H 0.07 4.70 7.69 -2.91 -0.02 4.67 16 9 N -0.49 -27.57 3.08 -650.60 -2.01 -29.57 16 10 C 0.14 6.23 5.65 86.65 0.49 6.72 16 11 C 0.10 3.26 7.68 86.65 0.67 3.93 16 12 N -0.63 -25.62 2.94 -842.43 -2.48 -28.10 16 13 C 0.19 6.18 6.12 85.64 0.52 6.70 16 14 C -0.12 -3.70 5.46 -19.87 -0.11 -3.80 16 15 C -0.11 -2.57 9.70 22.27 0.22 -2.36 16 16 C -0.13 -2.70 10.05 22.27 0.22 -2.48 16 17 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 18 C -0.14 -3.90 10.05 22.27 0.22 -3.67 16 19 C -0.12 -4.20 9.70 22.27 0.22 -3.99 16 20 C 0.64 34.37 8.25 179.47 1.48 35.85 16 21 O -0.67 -40.72 17.04 -3.96 -0.07 -40.79 16 22 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 23 H 0.06 3.02 7.38 -2.38 -0.02 3.00 16 24 H 0.06 3.04 7.63 -2.39 -0.02 3.02 16 25 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.06 2.33 7.86 -2.39 -0.02 2.31 16 28 H 0.12 2.76 8.08 -2.39 -0.02 2.75 16 29 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.09 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -74.26 285.97 4.26 -70.00 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.10 Total: 15.20 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.45 Total: 16.18 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -4.26 Total: -106.49 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.07 Total: -40.79 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.26 4.26 -70.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.682 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds