Wall clock time and date at job start Mon Mar 30 2020 04:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00555 * 2 1 4 4 H 1.48492 * 109.47425 * 240.00432 * 3 2 1 5 5 H 1.48498 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46791 * 120.00030 * 3 2 1 7 7 C 1.37886 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99909 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.47053 * 125.40596 * 90.00081 * 10 9 7 12 12 C 1.54106 * 103.85788 * 180.02562 * 11 10 9 13 13 N 1.47048 * 103.86337 * 0.02562 * 12 11 10 14 14 C 1.39954 * 125.40732 * 179.97438 * 13 12 11 15 15 C 1.38867 * 120.06817 * 354.24547 * 14 13 12 16 16 C 1.38114 * 119.92270 * 180.23144 * 15 14 13 17 17 C 1.38287 * 120.07302 * 359.49063 * 16 15 14 18 18 C 1.38272 * 120.13914 * 0.51030 * 17 16 15 19 19 C 1.38116 * 120.07096 * 359.74405 * 18 17 16 20 20 C 1.33940 * 109.18009 * 0.26198 * 13 12 11 21 21 O 1.21592 * 123.04225 * 179.73214 * 20 13 12 22 22 H 0.97001 * 119.99573 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47128 * 60.00155 * 9 7 2 24 24 H 1.08999 * 109.47524 * 300.00925 * 9 7 2 25 25 H 1.09005 * 110.54897 * 61.41104 * 11 10 9 26 26 H 1.08999 * 110.67357 * 298.65449 * 11 10 9 27 27 H 1.09001 * 110.54799 * 241.40369 * 12 11 10 28 28 H 1.08999 * 110.66941 * 118.65783 * 12 11 10 29 29 H 1.07998 * 120.03718 * 359.95657 * 15 14 13 30 30 H 1.08008 * 119.96050 * 179.74783 * 16 15 14 31 31 H 1.07994 * 119.92815 * 180.23332 * 17 16 15 32 32 H 1.08001 * 119.96925 * 179.76293 * 18 17 16 33 33 H 1.08004 * 120.03742 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.7563 -4.2604 1.1981 12 6 3.6882 -5.3495 0.6320 13 7 3.5612 -5.1994 -0.8252 14 6 4.2263 -5.9754 -1.7814 15 6 5.1791 -6.9039 -1.3834 16 6 5.8371 -7.6647 -2.3298 17 6 5.5404 -7.5102 -3.6716 18 6 4.5921 -6.5865 -4.0710 19 6 3.9343 -5.8189 -3.1299 20 6 2.7127 -4.1980 -1.0922 21 8 2.4277 -3.8542 -2.2231 22 1 -0.4849 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6244 -2.5571 0.8896 25 1 1.9604 -4.7087 1.7929 26 1 3.3225 -3.5454 1.7950 27 1 3.3551 -6.3389 0.9457 28 1 4.7175 -5.1763 0.9459 29 1 5.4086 -7.0278 -0.3354 30 1 6.5813 -8.3842 -2.0213 31 1 6.0536 -8.1090 -4.4094 32 1 4.3652 -6.4654 -5.1200 33 1 3.1940 -5.0973 -3.4425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259954044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:26 Heat of formation + Delta-G solvation = 21.433065 kcal Electronic energy + Delta-G solvation = -17363.390990 eV Core-core repulsion = 14582.807434 eV Total energy + Delta-G solvation = -2780.583556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95798 -38.54477 -35.87449 -34.64368 -32.68395 -30.73621 -30.18451 -28.31560 -27.08091 -23.68086 -23.43020 -22.20253 -21.10127 -19.32399 -17.47096 -16.83590 -16.22730 -15.95897 -15.58167 -14.80183 -14.42795 -14.09509 -13.58057 -13.42923 -13.36343 -13.11110 -13.05509 -12.32224 -12.03791 -11.83263 -11.50031 -11.31538 -11.02614 -10.95049 -10.66089 -10.18936 -9.98733 -9.73828 -9.18626 -8.79190 -8.49998 -8.00411 -7.45520 -6.11102 -4.16926 1.52381 1.59523 2.80947 3.29359 3.33829 3.37582 3.65347 4.11082 4.25742 4.43540 4.65772 4.90312 5.07502 5.12549 5.22164 5.26210 5.35590 5.51967 5.63367 5.75997 5.83701 5.97721 6.05892 6.28465 6.54324 6.70981 6.75505 6.86473 7.18362 7.36641 7.42198 7.54705 7.86418 8.12722 8.26974 8.83300 9.15306 9.49510 10.96493 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.005524 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.520448 B = 5067.793004 C = 5353.468522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.276 3.724 10 N -0.606 5.606 11 C 0.093 3.907 12 C 0.089 3.911 13 N -0.581 5.581 14 C 0.206 3.794 15 C -0.172 4.172 16 C -0.094 4.094 17 C -0.162 4.162 18 C -0.090 4.090 19 C -0.160 4.160 20 C 0.691 3.309 21 O -0.567 6.567 22 H 0.266 0.734 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 -14.362 0.847 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.076 0.924 9 C 0.159 3.841 10 N -0.341 5.341 11 C -0.031 4.031 12 C -0.034 4.034 13 N -0.307 5.307 14 C 0.110 3.890 15 C -0.194 4.194 16 C -0.112 4.112 17 C -0.182 4.182 18 C -0.109 4.109 19 C -0.180 4.180 20 C 0.394 3.606 21 O -0.444 6.444 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.774 -13.891 0.280 16.432 hybrid contribution 0.570 0.933 0.253 1.122 sum 9.344 -12.958 0.533 15.985 Atomic orbital electron populations 1.69914 1.06000 1.27375 1.49996 1.24926 0.94908 0.99267 0.94825 0.86509 0.79503 0.82435 0.78714 1.20106 1.21064 1.20190 1.21428 0.93516 0.90598 1.51750 0.92361 1.19188 0.85894 0.80363 0.98698 1.47842 1.46726 1.36034 1.03507 1.22271 0.96552 0.93894 0.90384 1.22502 1.01131 1.00189 0.79586 1.44814 1.45412 1.34242 1.06233 1.17546 0.92158 0.91122 0.88131 1.20651 0.99222 0.99629 0.99897 1.20810 0.98899 0.98660 0.92853 1.21010 1.00477 1.00828 0.95862 1.21043 0.95581 0.95041 0.99232 1.21786 1.03023 1.02329 0.90904 1.15925 0.79457 0.79418 0.85841 1.90762 1.65005 1.67743 1.20899 0.92480 0.93659 0.94269 0.90318 0.89799 0.89923 0.89935 0.86119 0.86149 0.86517 0.85979 0.82264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.28 7.18 5.75 -5.20 -0.03 7.15 16 10 N -0.61 -13.26 2.94 -180.19 -0.53 -13.79 16 11 C 0.09 1.45 7.68 -3.16 -0.02 1.43 16 12 C 0.09 1.17 6.49 -3.17 -0.02 1.15 16 13 N -0.58 -10.37 3.16 -118.24 -0.37 -10.74 16 14 C 0.21 3.44 6.62 -83.68 -0.55 2.89 16 15 C -0.17 -2.27 9.49 -39.39 -0.37 -2.65 16 16 C -0.09 -1.09 10.04 -39.61 -0.40 -1.49 16 17 C -0.16 -1.95 10.04 -39.55 -0.40 -2.34 16 18 C -0.09 -1.26 10.04 -39.61 -0.40 -1.66 16 19 C -0.16 -2.77 9.29 -39.39 -0.37 -3.14 16 20 C 0.69 15.54 8.21 -88.41 -0.73 14.82 16 21 O -0.57 -14.77 14.25 5.28 0.08 -14.69 16 22 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.05 1.31 7.92 -51.93 -0.41 0.90 16 24 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 29 H 0.12 1.30 7.29 -52.49 -0.38 0.92 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.16 3.24 5.29 -52.48 -0.28 2.96 16 LS Contribution 284.45 15.07 4.29 4.29 Total: -1.00 -33.10 284.45 -8.53 -41.63 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.00 Total: -0.42 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -3.71 Total: 2.46 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.17 Total: -49.95 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.10 -8.53 -41.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.058 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds