Wall clock time and date at job start Mon Mar 30 2020 04:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00555 * 2 1 4 4 H 1.48492 * 109.47425 * 240.00432 * 3 2 1 5 5 H 1.48498 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46791 * 120.00030 * 3 2 1 7 7 C 1.37886 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00057 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99909 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47288 * 180.02562 * 9 7 2 11 11 C 1.47053 * 125.40596 * 90.00081 * 10 9 7 12 12 C 1.54106 * 103.85788 * 180.02562 * 11 10 9 13 13 N 1.47048 * 103.86337 * 0.02562 * 12 11 10 14 14 C 1.39954 * 125.40732 * 179.97438 * 13 12 11 15 15 C 1.38867 * 120.06817 * 354.24547 * 14 13 12 16 16 C 1.38114 * 119.92270 * 180.23144 * 15 14 13 17 17 C 1.38287 * 120.07302 * 359.49063 * 16 15 14 18 18 C 1.38272 * 120.13914 * 0.51030 * 17 16 15 19 19 C 1.38116 * 120.07096 * 359.74405 * 18 17 16 20 20 C 1.33940 * 109.18009 * 0.26198 * 13 12 11 21 21 O 1.21592 * 123.04225 * 179.73214 * 20 13 12 22 22 H 0.97001 * 119.99573 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47128 * 60.00155 * 9 7 2 24 24 H 1.08999 * 109.47524 * 300.00925 * 9 7 2 25 25 H 1.09005 * 110.54897 * 61.41104 * 11 10 9 26 26 H 1.08999 * 110.67357 * 298.65449 * 11 10 9 27 27 H 1.09001 * 110.54799 * 241.40369 * 12 11 10 28 28 H 1.08999 * 110.66941 * 118.65783 * 12 11 10 29 29 H 1.07998 * 120.03718 * 359.95657 * 15 14 13 30 30 H 1.08008 * 119.96050 * 179.74783 * 16 15 14 31 31 H 1.07994 * 119.92815 * 180.23332 * 17 16 15 32 32 H 1.08001 * 119.96925 * 179.76293 * 18 17 16 33 33 H 1.08004 * 120.03742 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.7563 -4.2604 1.1981 12 6 3.6882 -5.3495 0.6320 13 7 3.5612 -5.1994 -0.8252 14 6 4.2263 -5.9754 -1.7814 15 6 5.1791 -6.9039 -1.3834 16 6 5.8371 -7.6647 -2.3298 17 6 5.5404 -7.5102 -3.6716 18 6 4.5921 -6.5865 -4.0710 19 6 3.9343 -5.8189 -3.1299 20 6 2.7127 -4.1980 -1.0922 21 8 2.4277 -3.8542 -2.2231 22 1 -0.4849 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6244 -2.5571 0.8896 25 1 1.9604 -4.7087 1.7929 26 1 3.3225 -3.5454 1.7950 27 1 3.3551 -6.3389 0.9457 28 1 4.7175 -5.1763 0.9459 29 1 5.4086 -7.0278 -0.3354 30 1 6.5813 -8.3842 -2.0213 31 1 6.0536 -8.1090 -4.4094 32 1 4.3652 -6.4654 -5.1200 33 1 3.1940 -5.0973 -3.4425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259954044.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:26 Heat of formation + Delta-G solvation = 0.557882 kcal Electronic energy + Delta-G solvation = -17364.296206 eV Core-core repulsion = 14582.807434 eV Total energy + Delta-G solvation = -2781.488771 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.40194 -39.70441 -37.54004 -36.25765 -34.63530 -31.80337 -31.63246 -29.58444 -28.94451 -25.49145 -24.63785 -23.55205 -22.31001 -20.83899 -18.87739 -18.72960 -17.50524 -17.41170 -17.20038 -16.40824 -15.95642 -15.37541 -14.84902 -14.82110 -14.76915 -14.70206 -14.23085 -13.99534 -13.50317 -13.29572 -13.01643 -12.79686 -12.63306 -12.56026 -12.22635 -12.04236 -11.79102 -11.19252 -10.85418 -10.67632 -9.84889 -9.68787 -8.74794 -8.26166 -6.43101 0.44376 0.51037 1.34742 1.38882 1.40626 1.48773 2.09236 2.35805 2.87723 2.98515 3.02460 3.48476 3.79275 4.10112 4.12187 4.28871 4.36647 4.48060 4.58923 4.65354 4.71810 4.80480 4.88346 5.04553 5.15863 5.25296 5.52101 5.53383 5.68177 5.70257 5.78244 5.91504 5.98503 6.22253 6.64584 6.69088 7.24083 7.51149 8.79406 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035322 B = 0.005524 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.520448 B = 5067.793004 C = 5353.468522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.552 4.552 8 H 0.050 0.950 9 C 0.292 3.708 10 N -0.620 5.620 11 C 0.086 3.914 12 C 0.093 3.907 13 N -0.578 5.578 14 C 0.172 3.828 15 C -0.160 4.160 16 C -0.085 4.085 17 C -0.152 4.152 18 C -0.099 4.099 19 C -0.198 4.198 20 C 0.677 3.323 21 O -0.623 6.623 22 H 0.270 0.730 23 H -0.002 1.002 24 H 0.039 0.961 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.153 0.847 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.133 0.867 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -16.317 2.342 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.591 4.591 8 H 0.069 0.931 9 C 0.172 3.828 10 N -0.355 5.355 11 C -0.037 4.037 12 C -0.028 4.028 13 N -0.304 5.304 14 C 0.078 3.922 15 C -0.181 4.181 16 C -0.103 4.103 17 C -0.171 4.171 18 C -0.117 4.117 19 C -0.219 4.219 20 C 0.379 3.621 21 O -0.504 6.504 22 H 0.079 0.921 23 H 0.017 0.983 24 H 0.057 0.943 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.132 0.868 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.822 -15.911 1.820 19.906 hybrid contribution -0.324 1.411 -0.277 1.474 sum 11.497 -14.500 1.544 18.570 Atomic orbital electron populations 1.70023 1.07469 1.28534 1.50364 1.25826 0.95827 1.02935 0.94082 0.85446 0.78336 0.77961 0.78938 1.20693 1.19931 1.18289 1.21663 0.93253 0.91952 1.52227 0.93148 1.18630 0.86264 0.81561 0.96322 1.47677 1.46411 1.35474 1.05961 1.22672 0.97856 0.94608 0.88525 1.22865 1.02391 1.01060 0.76463 1.44781 1.44280 1.32922 1.08457 1.17888 0.94016 0.92784 0.87552 1.21020 0.97297 0.97796 1.02031 1.21367 0.98564 0.98209 0.92190 1.21451 0.98887 0.99480 0.97289 1.21235 0.95980 0.95216 0.99288 1.21620 1.04006 1.03414 0.92842 1.16299 0.80188 0.80490 0.85102 1.90723 1.66971 1.69660 1.23071 0.92100 0.98344 0.94268 0.87853 0.89094 0.86111 0.86821 0.82901 0.81820 0.83021 0.84893 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.29 21.45 0.28 -55.30 16 2 C 0.01 0.75 5.46 84.66 0.46 1.22 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.55 -32.34 9.39 25.60 0.24 -32.10 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 9 C 0.29 16.08 5.75 85.63 0.49 16.57 16 10 N -0.62 -28.21 2.94 -842.73 -2.48 -30.68 16 11 C 0.09 2.56 7.68 86.65 0.67 3.23 16 12 C 0.09 2.19 6.49 86.65 0.56 2.75 16 13 N -0.58 -20.55 3.16 -646.74 -2.04 -22.59 16 14 C 0.17 5.64 6.62 38.15 0.25 5.90 16 15 C -0.16 -3.61 9.49 22.39 0.21 -3.40 16 16 C -0.09 -1.56 10.04 22.25 0.22 -1.33 16 17 C -0.15 -3.10 10.04 22.29 0.22 -2.87 16 18 C -0.10 -2.71 10.04 22.25 0.22 -2.49 16 19 C -0.20 -7.21 9.29 22.39 0.21 -7.01 16 20 C 0.68 32.10 8.21 179.57 1.47 33.57 16 21 O -0.62 -35.48 14.25 -4.00 -0.06 -35.54 16 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.00 -0.10 7.92 -2.38 -0.02 -0.12 16 24 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.11 1.99 8.11 -2.39 -0.02 1.97 16 29 H 0.15 2.40 7.29 -2.91 -0.02 2.38 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.11 5.21 5.29 -2.91 -0.02 5.19 16 Total: -1.00 -78.97 284.45 4.08 -74.89 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.10 Total: 8.14 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.24 Total: 14.02 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -4.23 Total: -108.58 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.06 Total: -35.54 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.97 4.08 -74.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954044.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.447 kcal (2) G-P(sol) polarization free energy of solvation -78.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds