Wall clock time and date at job start Mon Mar 30 2020 04:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48494 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47176 * 300.00648 * 3 2 1 6 6 H 1.48509 * 109.46879 * 60.00189 * 3 2 1 7 7 C 1.37874 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99532 * 179.71960 * 7 2 1 9 9 C 1.50703 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46969 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.22073 * 306.92995 * 10 9 7 12 12 N 1.46764 * 110.24291 * 68.95436 * 10 9 7 13 13 C 1.34416 * 111.30640 * 101.98342 * 12 10 9 14 14 O 1.21278 * 124.94872 * 180.37091 * 13 12 10 15 15 C 1.51288 * 110.11284 * 0.40278 * 13 12 10 16 16 C 1.54479 * 110.24433 * 184.99765 * 10 9 7 17 17 H 1.09004 * 110.96909 * 148.29906 * 16 10 9 18 18 C 1.50698 * 110.97151 * 24.53630 * 16 10 9 19 19 C 1.38234 * 119.61640 * 94.10297 * 18 16 10 20 20 C 1.38627 * 119.15838 * 179.75751 * 19 18 16 21 21 C 1.38672 * 118.41978 * 0.51142 * 20 19 18 22 22 C 1.38178 * 119.16739 * 359.72996 * 21 20 19 23 23 N 1.31849 * 119.61920 * 274.38131 * 18 16 10 24 24 H 0.97000 * 120.00086 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46830 * 299.99686 * 9 7 2 26 26 H 1.08997 * 109.46949 * 60.00040 * 9 7 2 27 27 H 0.97004 * 124.34827 * 281.97687 * 12 10 9 28 28 H 1.09000 * 110.48819 * 257.57552 * 15 13 12 29 29 H 1.09001 * 110.48285 * 134.92908 * 15 13 12 30 30 H 1.07997 * 120.41547 * 359.97438 * 19 18 16 31 31 H 1.08002 * 120.78746 * 180.21542 * 20 19 18 32 32 H 1.08001 * 120.41542 * 179.75542 * 21 20 19 33 33 H 1.07995 * 119.61997 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0051 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 1 2.9572 -3.5483 -0.8202 12 7 2.9512 -3.7278 1.2823 13 6 2.4511 -4.6994 2.0651 14 8 2.8458 -4.9649 3.1807 15 6 1.3246 -5.4141 1.3516 16 6 1.4953 -5.0065 -0.1302 17 1 2.0962 -5.7388 -0.6695 18 6 0.1563 -4.8162 -0.7948 19 6 0.0400 -4.9950 -2.1606 20 6 -1.1974 -4.8225 -2.7614 21 6 -2.2740 -4.4645 -1.9641 22 6 -2.0805 -4.2983 -0.6061 23 7 -0.8896 -4.4757 -0.0677 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5575 0.8880 26 1 0.6248 -2.5563 -0.8920 27 1 3.6845 -3.1450 1.5344 28 1 0.3593 -5.0787 1.7308 29 1 1.4257 -6.4935 1.4645 30 1 0.9014 -5.2691 -2.7515 31 1 -1.3189 -4.9589 -3.8259 32 1 -3.2516 -4.3178 -2.3991 33 1 -2.9139 -4.0200 0.0217 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968960.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:09 Heat of formation + Delta-G solvation = -5.145552 kcal Electronic energy + Delta-G solvation = -17792.467960 eV Core-core repulsion = 15010.731869 eV Total energy + Delta-G solvation = -2781.736091 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50699 -39.08543 -36.19566 -32.93867 -32.48177 -31.87813 -29.60883 -29.10763 -25.79663 -23.64039 -23.08683 -21.97583 -19.95415 -19.57954 -16.98102 -16.63369 -16.17017 -15.69288 -15.28699 -14.78428 -14.42451 -14.30791 -13.93407 -13.14861 -13.01764 -12.87816 -12.51104 -12.16847 -11.95590 -11.43585 -11.34114 -11.21417 -10.84977 -10.57267 -10.35420 -9.88635 -9.52152 -9.29674 -9.12335 -8.97844 -8.60538 -8.39437 -8.17507 -6.04979 -4.08211 1.45736 1.64602 3.23624 3.26877 3.35147 3.37545 4.02213 4.21203 4.40166 4.51981 4.83711 5.07193 5.13984 5.17324 5.31530 5.38840 5.42688 5.48201 5.65149 5.91431 6.01407 6.10552 6.18703 6.37361 6.46370 6.48014 6.70219 7.03807 7.32213 7.58226 7.72288 7.79095 7.94208 8.30910 8.41676 8.91694 8.97090 9.55562 11.05375 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.009947 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.952103 B = 2814.332851 C = 4074.022425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.019 3.981 10 C 0.143 3.857 11 H 0.079 0.921 12 N -0.705 5.705 13 C 0.519 3.481 14 O -0.562 6.562 15 C -0.144 4.144 16 C -0.057 4.057 17 H 0.095 0.905 18 C 0.162 3.838 19 C -0.171 4.171 20 C -0.075 4.075 21 C -0.183 4.183 22 C 0.113 3.887 23 N -0.465 5.465 24 H 0.259 0.741 25 H 0.033 0.967 26 H 0.027 0.973 27 H 0.409 0.591 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -10.450 -6.399 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.018 4.018 10 C 0.038 3.962 11 H 0.097 0.903 12 N -0.358 5.358 13 C 0.306 3.694 14 O -0.442 6.442 15 C -0.184 4.184 16 C -0.076 4.076 17 H 0.114 0.886 18 C 0.024 3.976 19 C -0.190 4.190 20 C -0.101 4.101 21 C -0.203 4.203 22 C -0.044 4.044 23 N -0.174 5.174 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.247 0.753 28 H 0.141 0.859 29 H 0.108 0.892 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.163 -10.424 -4.977 11.752 hybrid contribution 0.491 1.452 -1.036 1.850 sum -1.673 -8.971 -6.013 10.929 Atomic orbital electron populations 1.69981 1.05957 1.26406 1.50278 1.24971 0.94806 0.99114 0.95223 0.86590 0.80111 0.84037 0.77565 1.19783 1.21091 1.21036 1.21168 0.92775 0.90978 1.51181 0.92832 1.19540 0.93383 0.90415 0.98492 1.21928 0.94921 0.94579 0.84761 0.90288 1.46219 1.36425 1.34966 1.18140 1.20813 0.83057 0.80650 0.84923 1.90672 1.64961 1.69486 1.19057 1.22348 1.00759 1.01025 0.94254 1.21186 0.92285 0.98646 0.95533 0.88649 1.20559 0.93680 0.92986 0.90331 1.21808 0.98354 1.03360 0.95520 1.21439 0.92674 0.96096 0.99884 1.22026 0.99919 1.02783 0.95558 1.22645 0.94512 0.94352 0.92919 1.67367 0.99050 1.10422 1.40536 0.93101 0.94871 0.95527 0.75301 0.85896 0.89183 0.85186 0.85386 0.85392 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.01 8.95 -34.44 -0.31 -14.32 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 9 C 0.02 0.47 3.53 -27.88 -0.10 0.37 16 10 C 0.14 2.71 3.34 -67.01 -0.22 2.49 16 11 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 12 N -0.71 -13.47 5.71 -52.76 -0.30 -13.77 16 13 C 0.52 10.24 8.43 -10.86 -0.09 10.15 16 14 O -0.56 -12.79 18.03 5.56 0.10 -12.69 16 15 C -0.14 -2.40 6.35 -26.74 -0.17 -2.57 16 16 C -0.06 -0.90 3.31 -90.14 -0.30 -1.20 16 17 H 0.10 1.20 8.11 -51.93 -0.42 0.78 16 18 C 0.16 2.67 3.88 -82.59 -0.32 2.35 16 19 C -0.17 -2.41 9.76 -39.44 -0.39 -2.79 16 20 C -0.07 -0.97 10.18 -39.28 -0.40 -1.37 16 21 C -0.18 -2.45 10.11 -39.44 -0.40 -2.84 16 22 C 0.11 1.76 11.18 -17.55 -0.20 1.57 16 23 N -0.47 -8.31 7.85 -9.47 -0.07 -8.39 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.03 0.91 7.90 -51.93 -0.41 0.50 16 26 H 0.03 0.69 6.69 -51.93 -0.35 0.34 16 27 H 0.41 7.57 8.96 -40.82 -0.37 7.20 16 28 H 0.12 2.23 6.76 -51.93 -0.35 1.88 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 283.21 15.07 4.27 4.27 Total: -1.00 -32.89 283.21 -7.25 -40.15 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.97 Total: 5.98 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.99 Total: -6.56 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.36 Total: -47.45 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.10 Total: -12.69 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.89 -7.25 -40.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968960.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.000 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds