Wall clock time and date at job start Mon Mar 30 2020 04:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99863 * 2 1 4 4 H 1.48494 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47176 * 300.00648 * 3 2 1 6 6 H 1.48509 * 109.46879 * 60.00189 * 3 2 1 7 7 C 1.37874 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99532 * 179.71960 * 7 2 1 9 9 C 1.50703 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46969 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.22073 * 306.92995 * 10 9 7 12 12 N 1.46764 * 110.24291 * 68.95436 * 10 9 7 13 13 C 1.34416 * 111.30640 * 101.98342 * 12 10 9 14 14 O 1.21278 * 124.94872 * 180.37091 * 13 12 10 15 15 C 1.51288 * 110.11284 * 0.40278 * 13 12 10 16 16 C 1.54479 * 110.24433 * 184.99765 * 10 9 7 17 17 H 1.09004 * 110.96909 * 148.29906 * 16 10 9 18 18 C 1.50698 * 110.97151 * 24.53630 * 16 10 9 19 19 C 1.38234 * 119.61640 * 94.10297 * 18 16 10 20 20 C 1.38627 * 119.15838 * 179.75751 * 19 18 16 21 21 C 1.38672 * 118.41978 * 0.51142 * 20 19 18 22 22 C 1.38178 * 119.16739 * 359.72996 * 21 20 19 23 23 N 1.31849 * 119.61920 * 274.38131 * 18 16 10 24 24 H 0.97000 * 120.00086 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46830 * 299.99686 * 9 7 2 26 26 H 1.08997 * 109.46949 * 60.00040 * 9 7 2 27 27 H 0.97004 * 124.34827 * 281.97687 * 12 10 9 28 28 H 1.09000 * 110.48819 * 257.57552 * 15 13 12 29 29 H 1.09001 * 110.48285 * 134.92908 * 15 13 12 30 30 H 1.07997 * 120.41547 * 359.97438 * 19 18 16 31 31 H 1.08002 * 120.78746 * 180.21542 * 20 19 18 32 32 H 1.08001 * 120.41542 * 179.75542 * 21 20 19 33 33 H 1.07995 * 119.61997 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0051 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 1 2.9572 -3.5483 -0.8202 12 7 2.9512 -3.7278 1.2823 13 6 2.4511 -4.6994 2.0651 14 8 2.8458 -4.9649 3.1807 15 6 1.3246 -5.4141 1.3516 16 6 1.4953 -5.0065 -0.1302 17 1 2.0962 -5.7388 -0.6695 18 6 0.1563 -4.8162 -0.7948 19 6 0.0400 -4.9950 -2.1606 20 6 -1.1974 -4.8225 -2.7614 21 6 -2.2740 -4.4645 -1.9641 22 6 -2.0805 -4.2983 -0.6061 23 7 -0.8896 -4.4757 -0.0677 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5575 0.8880 26 1 0.6248 -2.5563 -0.8920 27 1 3.6845 -3.1450 1.5344 28 1 0.3593 -5.0787 1.7308 29 1 1.4257 -6.4935 1.4645 30 1 0.9014 -5.2691 -2.7515 31 1 -1.3189 -4.9589 -3.8259 32 1 -3.2516 -4.3178 -2.3991 33 1 -2.9139 -4.0200 0.0217 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259968960.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:09 Heat of formation + Delta-G solvation = -27.903803 kcal Electronic energy + Delta-G solvation = -17793.454832 eV Core-core repulsion = 15010.731869 eV Total energy + Delta-G solvation = -2782.722963 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.83719 -40.41639 -37.78703 -34.96896 -33.75653 -33.01643 -31.33501 -30.49603 -27.46777 -25.19580 -24.20436 -23.52818 -21.41765 -21.00701 -18.68563 -18.17474 -17.68532 -16.88540 -16.70011 -16.36170 -16.00730 -15.78228 -15.35944 -14.69094 -14.28080 -14.16243 -14.04807 -13.74260 -13.47773 -13.20041 -12.82832 -12.63979 -12.49433 -12.28326 -12.03355 -11.68329 -11.11201 -10.90343 -10.58173 -10.56829 -10.13500 -9.89281 -9.62796 -8.17308 -6.26765 0.34943 0.58521 1.36618 1.39143 1.49484 1.66249 2.39496 2.57584 2.99959 3.17592 3.28832 3.64329 3.80532 3.91420 4.14680 4.22823 4.31946 4.42636 4.49425 4.71065 4.78005 4.83638 4.96503 4.98920 5.19892 5.38069 5.42788 5.45337 5.61787 5.83573 5.98272 6.04409 6.14561 6.29530 6.90341 7.28885 7.35269 7.41208 8.93244 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.009947 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.952103 B = 2814.332851 C = 4074.022425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.288 1.288 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.038 3.962 10 C 0.146 3.854 11 H 0.100 0.900 12 N -0.703 5.703 13 C 0.514 3.486 14 O -0.597 6.597 15 C -0.136 4.136 16 C -0.044 4.044 17 H 0.140 0.860 18 C 0.133 3.867 19 C -0.171 4.171 20 C -0.078 4.078 21 C -0.179 4.179 22 C 0.082 3.918 23 N -0.503 5.503 24 H 0.259 0.741 25 H -0.010 1.010 26 H 0.008 0.992 27 H 0.409 0.591 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -11.175 -8.468 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.215 1.215 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.000 4.000 10 C 0.041 3.959 11 H 0.118 0.882 12 N -0.355 5.355 13 C 0.301 3.699 14 O -0.480 6.480 15 C -0.176 4.176 16 C -0.063 4.063 17 H 0.157 0.843 18 C -0.004 4.004 19 C -0.190 4.190 20 C -0.104 4.104 21 C -0.199 4.199 22 C -0.075 4.075 23 N -0.212 5.212 24 H 0.068 0.932 25 H 0.009 0.991 26 H 0.026 0.974 27 H 0.247 0.753 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.255 -11.151 -7.065 13.260 hybrid contribution 0.150 1.694 -0.406 1.749 sum -1.105 -9.456 -7.471 12.102 Atomic orbital electron populations 1.70121 1.07569 1.27119 1.51788 1.25829 0.95579 1.02806 0.95198 0.85575 0.79422 0.79788 0.77303 1.18404 1.20538 1.21489 1.21677 0.93437 0.92237 1.49873 0.91985 1.19237 0.93459 0.91805 0.95524 1.21835 0.94371 0.94603 0.85081 0.88183 1.46275 1.36165 1.34671 1.18339 1.21324 0.83328 0.80716 0.84487 1.90644 1.66188 1.70577 1.20556 1.22303 0.98261 1.02371 0.94675 1.21259 0.92498 0.97372 0.95213 0.84272 1.20770 0.93493 0.94579 0.91607 1.22191 0.99993 1.02126 0.94724 1.21936 0.91963 0.94806 1.01648 1.22381 1.01658 1.01228 0.94630 1.22948 0.94364 0.95654 0.94552 1.67277 1.00219 1.11530 1.42183 0.93247 0.99138 0.97369 0.75319 0.87813 0.86229 0.82149 0.81743 0.82534 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.53 -28.60 8.95 25.60 0.23 -28.37 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.04 1.83 3.53 29.85 0.11 1.94 16 10 C 0.15 5.34 3.34 45.44 0.15 5.49 16 11 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 12 N -0.70 -26.42 5.71 -439.44 -2.51 -28.93 16 13 C 0.51 20.12 8.43 87.90 0.74 20.86 16 14 O -0.60 -27.33 18.03 -3.02 -0.05 -27.39 16 15 C -0.14 -4.43 6.35 30.59 0.19 -4.23 16 16 C -0.04 -1.30 3.31 -10.48 -0.03 -1.34 16 17 H 0.14 2.89 8.11 -2.39 -0.02 2.87 16 18 C 0.13 4.22 3.88 42.55 0.17 4.39 16 19 C -0.17 -4.34 9.76 22.36 0.22 -4.12 16 20 C -0.08 -1.78 10.18 22.47 0.23 -1.55 16 21 C -0.18 -4.51 10.11 22.36 0.23 -4.28 16 22 C 0.08 2.58 11.18 84.67 0.95 3.52 16 23 N -0.50 -18.24 7.85 -183.89 -1.44 -19.68 16 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 25 H -0.01 -0.56 7.90 -2.39 -0.02 -0.58 16 26 H 0.01 0.43 6.69 -2.39 -0.02 0.41 16 27 H 0.41 14.95 8.96 -92.71 -0.83 14.11 16 28 H 0.10 3.86 6.76 -2.39 -0.02 3.85 16 29 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -72.84 283.21 2.23 -70.61 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.29 Total: 21.71 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 3.63 Total: -7.01 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -3.67 Total: -103.72 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.84 2.23 -70.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968960.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.703 kcal (2) G-P(sol) polarization free energy of solvation -72.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds