Wall clock time and date at job start Mon Mar 30 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46972 * 2 1 4 4 C 1.50700 * 109.47000 * 119.99907 * 2 1 3 5 5 H 1.08003 * 119.99551 * 120.01064 * 4 2 1 6 6 C 1.37876 * 120.00493 * 299.99728 * 4 2 1 7 7 N 1.31517 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00119 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47105 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46801 * 120.00493 * 8 6 4 11 11 H 1.48505 * 109.46877 * 240.00145 * 8 6 4 12 12 C 1.53002 * 109.46977 * 240.00344 * 2 1 3 13 13 H 1.09005 * 110.27533 * 302.11744 * 12 2 1 14 14 C 1.53297 * 110.31985 * 179.97438 * 12 2 1 15 15 C 1.44549 * 115.20280 * 147.73342 * 14 12 2 16 16 C 1.55156 * 110.71381 * 63.90506 * 15 14 12 17 17 S 1.79153 * 109.58604 * 285.55908 * 16 15 14 18 18 O 1.42098 * 107.94211 * 204.61683 * 17 16 15 19 19 O 1.42105 * 107.94149 * 333.90467 * 17 16 15 20 20 C 1.82243 * 105.83957 * 89.29872 * 17 16 15 21 21 C 1.51255 * 110.32613 * 64.41222 * 12 2 1 22 22 H 1.09000 * 109.47241 * 59.99977 * 1 2 3 23 23 H 1.09002 * 109.46645 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47126 * 299.99550 * 1 2 3 25 25 H 0.96996 * 119.99947 * 180.02562 * 7 6 4 26 26 H 1.08997 * 108.33606 * 26.25119 * 14 12 2 27 27 H 1.08994 * 108.33635 * 269.21514 * 14 12 2 28 28 H 1.08997 * 109.23156 * 303.58727 * 15 14 12 29 29 H 1.08999 * 109.22916 * 184.22162 * 15 14 12 30 30 H 1.09002 * 109.44802 * 45.58814 * 16 15 14 31 31 H 1.08997 * 109.44987 * 165.53418 * 16 15 14 32 32 H 1.08998 * 109.14663 * 198.60356 * 20 17 16 33 33 H 1.09001 * 109.16531 * 79.44902 * 20 17 16 34 34 H 1.09005 * 109.45823 * 344.12577 * 21 12 2 35 35 H 1.08997 * 109.45898 * 104.09070 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2394 2.4828 7 7 0.9429 0.8297 2.6035 8 14 2.3226 -1.1196 4.0079 9 1 3.1484 -2.2856 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8165 12 6 2.0400 -0.7212 -1.2493 13 1 1.6534 -1.7398 -1.2817 14 6 3.5728 -0.7320 -1.2693 15 6 4.1722 -1.8940 -1.8858 16 6 3.8080 -1.9652 -3.3923 17 16 2.1034 -2.4854 -3.5742 18 8 1.9626 -3.0834 -4.8556 19 8 1.7532 -3.2469 -2.4267 20 6 1.1122 -0.9562 -3.5579 21 6 1.6376 0.0370 -2.4947 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.7089 1.1613 3.4844 26 1 3.9296 -0.6667 -0.2415 27 1 3.9150 0.1544 -1.8034 28 1 3.8101 -2.7925 -1.3861 29 1 5.2556 -1.8375 -1.7806 30 1 3.9375 -0.9816 -3.8439 31 1 4.4612 -2.6819 -3.8901 32 1 0.0749 -1.2048 -3.3336 33 1 1.1619 -0.4870 -4.5405 34 1 0.8531 0.7521 -2.2469 35 1 2.5022 0.5694 -2.8910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260283631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:56 Heat of formation + Delta-G solvation = -80.267564 kcal Electronic energy + Delta-G solvation = -17318.689479 eV Core-core repulsion = 14636.847054 eV Total energy + Delta-G solvation = -2681.842426 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.47409 -36.48459 -35.78905 -34.01214 -32.71007 -30.43596 -28.11624 -25.30521 -24.95503 -22.17978 -20.62550 -19.36564 -18.38790 -16.80068 -16.30348 -15.97724 -15.49294 -14.62576 -14.29767 -13.96983 -13.56908 -13.31819 -13.16568 -12.53546 -12.16608 -12.00396 -11.83827 -11.75652 -11.72283 -11.23231 -10.98250 -10.70185 -10.57004 -10.40581 -10.32233 -10.15667 -9.98424 -9.77730 -9.46022 -9.09521 -8.66474 -8.28508 -5.95277 -3.99767 0.22112 3.01220 3.31985 3.40621 3.44991 3.84446 4.12946 4.46982 4.69035 4.80100 4.84196 5.12217 5.23155 5.35827 5.48936 5.58825 5.80120 5.91423 5.93406 6.12732 6.29563 6.51070 6.53872 6.78992 6.86540 7.03319 7.10848 7.28405 7.39076 7.78416 8.01825 8.18347 8.50282 9.04002 9.64613 11.10919 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035057 B = 0.007539 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.502727 B = 3713.276353 C = 3987.139396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 H 0.026 0.974 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.887 3.113 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.132 4.132 13 H 0.104 0.896 14 C -0.140 4.140 15 C -0.092 4.092 16 C -0.623 4.623 17 S 2.420 3.580 18 O -0.967 6.967 19 O -0.930 6.930 20 C -0.598 4.598 21 C -0.105 4.105 22 H 0.008 0.992 23 H 0.028 0.972 24 H 0.082 0.918 25 H 0.258 0.742 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 -1.432 -11.467 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.042 3.958 3 H 0.044 0.956 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.715 3.285 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 C -0.150 4.150 13 H 0.122 0.878 14 C -0.177 4.177 15 C -0.130 4.130 16 C -0.753 4.753 17 S 2.603 3.397 18 O -0.964 6.964 19 O -0.927 6.927 20 C -0.728 4.728 21 C -0.143 4.143 22 H 0.027 0.973 23 H 0.047 0.953 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.105 0.895 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.853 -2.161 -11.433 12.257 hybrid contribution 0.529 0.414 0.776 1.027 sum 4.382 -1.746 -10.657 11.654 Atomic orbital electron populations 1.21894 0.98942 0.99240 0.99934 1.18570 0.92243 0.95233 0.89762 0.95589 1.21259 1.30608 1.12105 0.90365 0.92165 1.24959 0.95249 0.95022 0.98945 1.69895 1.37122 1.23164 1.23035 0.86613 0.78680 0.79767 0.83420 1.19703 1.21266 1.21157 1.21966 0.94357 1.02568 0.96125 0.87808 1.20531 0.96722 0.96496 1.03938 1.20135 1.02138 1.02164 0.88568 1.30582 1.24411 1.12739 1.07558 1.07839 0.78743 0.78438 0.74635 1.93514 1.86159 1.74328 1.42400 1.93555 1.81915 1.66897 1.50315 1.30648 1.14792 1.19334 1.08022 1.21918 1.01828 0.97300 0.93224 0.97337 0.95324 0.89939 0.93242 0.88601 0.92923 0.89350 0.90510 0.85314 0.85148 0.84965 0.86069 0.89535 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.76 37.16 0.33 -3.01 16 2 C 0.06 1.41 1.77 -91.77 -0.16 1.25 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.51 -13.29 7.41 -34.44 -0.26 -13.54 16 5 H 0.06 1.57 7.15 -52.48 -0.38 1.20 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C -0.13 -2.46 1.44 -91.34 -0.13 -2.59 16 13 H 0.10 2.06 4.49 -51.93 -0.23 1.83 16 14 C -0.14 -2.29 4.32 -30.52 -0.13 -2.42 16 15 C -0.09 -1.27 5.34 -29.53 -0.16 -1.43 16 16 C -0.62 -7.11 5.83 38.30 0.22 -6.89 16 17 S 2.42 34.06 4.89 -107.50 -0.53 33.54 16 18 O -0.97 -15.84 18.05 -57.93 -1.05 -16.89 16 19 O -0.93 -16.86 14.11 -57.93 -0.82 -17.68 16 20 C -0.60 -7.51 6.49 38.04 0.25 -7.26 16 21 C -0.10 -1.54 5.01 -26.72 -0.13 -1.68 16 22 H 0.01 0.16 6.43 -51.93 -0.33 -0.18 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.10 1.81 6.31 -51.93 -0.33 1.48 16 27 H 0.05 0.74 6.73 -51.93 -0.35 0.39 16 28 H 0.09 1.35 7.12 -51.93 -0.37 0.99 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.13 1.13 7.69 -51.74 -0.40 0.73 16 31 H 0.13 1.24 8.14 -51.74 -0.42 0.82 16 32 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.35 6.01 -51.93 -0.31 1.04 16 35 H 0.07 0.85 6.41 -51.93 -0.33 0.51 16 LS Contribution 272.49 15.07 4.11 4.11 Total: -1.00 -32.07 272.49 -7.96 -40.04 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.02 Total: 1.31 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: -0.27 Total: -36.07 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.63 Total: -24.47 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.86 Total: -34.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 34.06 SS G_CDS: -0.53 Total: 33.54 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.07 -7.96 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.229 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds