Wall clock time and date at job start Mon Mar 30 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46972 * 2 1 4 4 C 1.50700 * 109.47000 * 119.99907 * 2 1 3 5 5 H 1.08003 * 119.99551 * 120.01064 * 4 2 1 6 6 C 1.37876 * 120.00493 * 299.99728 * 4 2 1 7 7 N 1.31517 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00119 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47105 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46801 * 120.00493 * 8 6 4 11 11 H 1.48505 * 109.46877 * 240.00145 * 8 6 4 12 12 C 1.53002 * 109.46977 * 240.00344 * 2 1 3 13 13 H 1.09005 * 110.27533 * 302.11744 * 12 2 1 14 14 C 1.53297 * 110.31985 * 179.97438 * 12 2 1 15 15 C 1.44549 * 115.20280 * 147.73342 * 14 12 2 16 16 C 1.55156 * 110.71381 * 63.90506 * 15 14 12 17 17 S 1.79153 * 109.58604 * 285.55908 * 16 15 14 18 18 O 1.42098 * 107.94211 * 204.61683 * 17 16 15 19 19 O 1.42105 * 107.94149 * 333.90467 * 17 16 15 20 20 C 1.82243 * 105.83957 * 89.29872 * 17 16 15 21 21 C 1.51255 * 110.32613 * 64.41222 * 12 2 1 22 22 H 1.09000 * 109.47241 * 59.99977 * 1 2 3 23 23 H 1.09002 * 109.46645 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47126 * 299.99550 * 1 2 3 25 25 H 0.96996 * 119.99947 * 180.02562 * 7 6 4 26 26 H 1.08997 * 108.33606 * 26.25119 * 14 12 2 27 27 H 1.08994 * 108.33635 * 269.21514 * 14 12 2 28 28 H 1.08997 * 109.23156 * 303.58727 * 15 14 12 29 29 H 1.08999 * 109.22916 * 184.22162 * 15 14 12 30 30 H 1.09002 * 109.44802 * 45.58814 * 16 15 14 31 31 H 1.08997 * 109.44987 * 165.53418 * 16 15 14 32 32 H 1.08998 * 109.14663 * 198.60356 * 20 17 16 33 33 H 1.09001 * 109.16531 * 79.44902 * 20 17 16 34 34 H 1.09005 * 109.45823 * 344.12577 * 21 12 2 35 35 H 1.08997 * 109.45898 * 104.09070 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2394 2.4828 7 7 0.9429 0.8297 2.6035 8 14 2.3226 -1.1196 4.0079 9 1 3.1484 -2.2856 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8165 12 6 2.0400 -0.7212 -1.2493 13 1 1.6534 -1.7398 -1.2817 14 6 3.5728 -0.7320 -1.2693 15 6 4.1722 -1.8940 -1.8858 16 6 3.8080 -1.9652 -3.3923 17 16 2.1034 -2.4854 -3.5742 18 8 1.9626 -3.0834 -4.8556 19 8 1.7532 -3.2469 -2.4267 20 6 1.1122 -0.9562 -3.5579 21 6 1.6376 0.0370 -2.4947 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.7089 1.1613 3.4844 26 1 3.9296 -0.6667 -0.2415 27 1 3.9150 0.1544 -1.8034 28 1 3.8101 -2.7925 -1.3861 29 1 5.2556 -1.8375 -1.7806 30 1 3.9375 -0.9816 -3.8439 31 1 4.4612 -2.6819 -3.8901 32 1 0.0749 -1.2048 -3.3336 33 1 1.1619 -0.4870 -4.5405 34 1 0.8531 0.7521 -2.2469 35 1 2.5022 0.5694 -2.8910 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:56 Heat of formation + Delta-G solvation = -102.457288 kcal Electronic energy + Delta-G solvation = -17319.651698 eV Core-core repulsion = 14636.847054 eV Total energy + Delta-G solvation = -2682.804644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80364 -37.70292 -36.98357 -35.62498 -34.12851 -32.07876 -29.42856 -27.15634 -26.31323 -23.54421 -22.02167 -20.89157 -19.48705 -18.37409 -17.54612 -17.48296 -16.68717 -16.40099 -15.54608 -15.16771 -15.01093 -14.62239 -14.46305 -14.00828 -13.55870 -13.30750 -13.17017 -13.10165 -12.96183 -12.83938 -12.68801 -12.35270 -12.17093 -12.11089 -11.87141 -11.46740 -11.31888 -11.16128 -10.91424 -10.76763 -10.46897 -10.32178 -8.02551 -6.11947 -0.82637 1.39728 1.43558 1.53555 2.00276 2.47343 2.81325 3.06369 3.25767 3.65975 3.79726 3.92169 4.06003 4.13052 4.33800 4.61915 4.67452 4.75745 4.82309 4.96064 5.01602 5.05464 5.10355 5.27546 5.39712 5.48742 5.51071 5.66203 5.71277 5.76486 6.13867 6.23860 6.50947 7.00053 7.54732 9.02320 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035057 B = 0.007539 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.502727 B = 3713.276353 C = 3987.139396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.056 3.944 3 H 0.007 0.993 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.941 3.059 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.287 1.287 12 C -0.137 4.137 13 H 0.089 0.911 14 C -0.137 4.137 15 C -0.096 4.096 16 C -0.603 4.603 17 S 2.413 3.587 18 O -0.995 6.995 19 O -0.983 6.983 20 C -0.586 4.586 21 C -0.105 4.105 22 H 0.039 0.961 23 H 0.017 0.983 24 H 0.051 0.949 25 H 0.257 0.743 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.130 0.870 33 H 0.163 0.837 34 H 0.078 0.922 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -0.851 -13.431 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.038 3.962 3 H 0.025 0.975 4 C -0.552 4.552 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.768 3.232 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.213 1.213 12 C -0.156 4.156 13 H 0.107 0.893 14 C -0.174 4.174 15 C -0.134 4.134 16 C -0.735 4.735 17 S 2.602 3.398 18 O -0.992 6.992 19 O -0.980 6.980 20 C -0.718 4.718 21 C -0.143 4.143 22 H 0.057 0.943 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.148 0.852 33 H 0.181 0.819 34 H 0.097 0.903 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.309 -1.613 -13.403 14.506 hybrid contribution 0.086 0.270 1.387 1.416 sum 5.395 -1.343 -12.015 13.239 Atomic orbital electron populations 1.21775 0.99275 0.98422 0.99931 1.18536 0.92034 0.94331 0.91295 0.97537 1.21633 1.29939 1.11779 0.91841 0.92846 1.25652 0.95774 0.95833 1.01596 1.70014 1.38295 1.24383 1.23381 0.85758 0.78093 0.78920 0.80431 1.19311 1.20654 1.21345 1.21847 0.96245 1.01666 0.95834 0.89300 1.20501 0.94959 0.99107 1.02827 1.20090 1.03490 0.99868 0.89977 1.30390 1.21327 1.15790 1.06034 1.07746 0.80163 0.78872 0.73031 1.93479 1.87084 1.75653 1.42981 1.93498 1.83418 1.69244 1.51852 1.30516 1.14100 1.17612 1.09542 1.21865 1.03225 0.97170 0.91998 0.94255 0.96390 0.93013 0.93400 0.91942 0.89862 0.91764 0.87753 0.81294 0.82550 0.85158 0.81860 0.90299 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 8.76 71.98 0.63 -5.85 16 2 C 0.06 2.67 1.77 -11.54 -0.02 2.65 16 3 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 4 C -0.51 -27.64 7.41 25.60 0.19 -27.45 16 5 H 0.05 2.87 7.15 -2.91 -0.02 2.85 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.94 44.11 29.54 68.60 2.03 46.14 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 C -0.14 -4.98 1.44 -11.26 -0.02 -5.00 16 13 H 0.09 3.55 4.49 -2.38 -0.01 3.54 16 14 C -0.14 -4.20 4.32 28.14 0.12 -4.08 16 15 C -0.10 -2.40 5.34 28.78 0.15 -2.25 16 16 C -0.60 -11.16 5.83 72.72 0.42 -10.74 16 17 S 2.41 62.96 4.89 -56.49 -0.28 62.68 16 18 O -0.99 -30.67 18.05 -127.28 -2.30 -32.96 16 19 O -0.98 -35.92 14.11 -127.28 -1.80 -37.71 16 20 C -0.59 -12.76 6.49 72.56 0.47 -12.28 16 21 C -0.10 -2.75 5.01 30.60 0.15 -2.59 16 22 H 0.04 1.57 6.43 -2.39 -0.02 1.55 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.05 2.77 6.07 -2.38 -0.01 2.75 16 25 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.06 2.33 6.31 -2.39 -0.02 2.32 16 27 H 0.08 2.01 6.73 -2.39 -0.02 1.99 16 28 H 0.06 1.94 7.12 -2.39 -0.02 1.92 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.17 1.83 7.69 -2.50 -0.02 1.81 16 31 H 0.16 2.21 8.14 -2.51 -0.02 2.19 16 32 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.23 6.01 -2.38 -0.01 2.22 16 35 H 0.11 2.01 6.41 -2.39 -0.02 1.99 16 Total: -1.00 -72.37 272.49 1.53 -70.84 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.07 Total: 10.40 kcal Atomic # 6 Polarization: -69.21 SS G_CDS: 2.56 Total: -66.65 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.24 Total: -52.73 kcal Atomic # 8 Polarization: -66.58 SS G_CDS: -4.09 Total: -70.68 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 62.96 SS G_CDS: -0.28 Total: 62.68 kcal Total: -72.37 1.53 -70.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.616 kcal (2) G-P(sol) polarization free energy of solvation -72.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds