Wall clock time and date at job start Mon Mar 30 2020 04:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00067 * 2 1 4 4 H 1.48494 * 109.47032 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46791 * 120.00276 * 3 2 1 6 6 H 1.48498 * 109.47214 * 240.00086 * 3 2 1 7 7 C 1.37882 * 119.99601 * 180.27657 * 2 1 3 8 8 H 1.07997 * 119.99605 * 179.72265 * 7 2 1 9 9 C 1.50700 * 120.00147 * 359.72598 * 7 2 1 10 10 C 1.50697 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.38303 * 119.96706 * 269.72481 * 10 9 7 12 12 C 1.38266 * 120.14651 * 179.76700 * 11 10 9 13 13 C 1.38132 * 120.06432 * 0.50385 * 12 11 10 14 14 C 1.38854 * 119.92922 * 359.75208 * 13 12 11 15 15 N 1.39935 * 120.06610 * 180.02562 * 14 13 12 16 16 N 1.36337 * 123.52480 * 227.19031 * 15 14 13 17 17 C 1.48136 * 107.84961 * 161.46826 * 16 15 14 18 18 C 1.54799 * 101.87475 * 26.32207 * 17 16 15 19 19 C 1.34583 * 123.52409 * 46.90462 * 15 14 13 20 20 O 1.21283 * 126.04332 * 1.58790 * 19 15 14 21 21 C 1.38089 * 119.96685 * 89.99604 * 10 9 7 22 22 H 0.96999 * 120.00419 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47135 * 299.99634 * 9 7 2 24 24 H 1.09003 * 109.47256 * 59.99562 * 9 7 2 25 25 H 1.08010 * 119.92578 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.96764 * 180.25333 * 12 11 10 27 27 H 1.08003 * 120.03506 * 179.76411 * 13 12 11 28 28 H 1.00894 * 110.99996 * 283.26523 * 16 15 14 29 29 H 1.09000 * 110.94751 * 144.46983 * 17 16 15 30 30 H 1.09001 * 110.94578 * 268.17776 * 17 16 15 31 31 H 1.08990 * 110.85122 * 94.18662 * 18 17 16 32 32 H 1.09002 * 110.84868 * 217.61592 * 18 17 16 33 33 H 1.08003 * 120.03626 * 359.96219 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0058 8 1 3.0844 -1.1941 -0.0103 9 6 1.2509 -2.4992 -0.0058 10 6 2.2301 -3.6446 -0.0133 11 6 2.6692 -4.1703 -1.2148 12 6 3.5713 -5.2181 -1.2261 13 6 4.0289 -5.7500 -0.0362 14 6 3.5859 -5.2280 1.1718 15 7 4.0480 -5.7644 2.3788 16 7 3.2307 -6.0880 3.4209 17 6 3.9716 -7.0139 4.3086 18 6 5.4416 -6.6244 4.0195 19 6 5.3452 -6.0199 2.6304 20 8 6.2737 -5.8028 1.8809 21 6 2.6838 -4.1720 1.1795 22 1 -0.4851 -0.8400 -0.0004 23 1 0.6280 -2.5591 0.8866 24 1 0.6205 -2.5548 -0.8933 25 1 2.3098 -3.7586 -2.1465 26 1 3.9154 -5.6236 -2.1660 27 1 4.7306 -6.5710 -0.0456 28 1 2.9394 -5.2622 3.9220 29 1 3.7198 -6.8365 5.3542 30 1 3.7823 -8.0518 4.0344 31 1 5.7978 -5.8905 4.7423 32 1 6.0830 -7.5058 4.0157 33 1 2.3377 -3.7637 2.1176 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260293645.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:46 Heat of formation + Delta-G solvation = 0.213309 kcal Electronic energy + Delta-G solvation = -17172.564038 eV Core-core repulsion = 14391.060325 eV Total energy + Delta-G solvation = -2781.503713 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.36771 -39.96585 -38.38549 -35.97356 -34.26745 -32.83352 -30.60812 -30.13621 -28.53095 -25.34309 -24.68066 -23.38164 -22.67992 -20.98095 -19.35555 -18.75551 -18.13439 -17.28878 -16.89275 -16.06155 -15.78731 -15.65797 -15.37444 -15.24547 -14.76459 -14.61556 -14.17035 -13.82520 -13.48719 -13.42974 -13.10180 -12.69450 -12.51233 -12.29810 -12.03363 -11.91246 -11.71100 -11.13545 -10.92001 -10.59916 -10.17614 -9.66951 -8.99571 -8.69015 -6.43493 0.20316 0.43350 1.27320 1.38909 1.50907 1.58151 1.78738 2.51692 2.74419 3.11244 3.12960 3.42609 3.67853 3.93047 3.95029 4.02343 4.19390 4.36633 4.42404 4.56412 4.60807 4.79306 4.83986 4.95052 4.99877 5.09703 5.25067 5.30904 5.45324 5.78184 5.84647 5.88762 6.03485 6.12217 6.45270 6.52561 6.92738 7.35598 8.68326 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026648 B = 0.005641 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.500435 B = 4962.828751 C = 5231.747405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.030 4.030 3 Si 1.115 2.885 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.606 4.606 8 H 0.041 0.959 9 C 0.043 3.957 10 C -0.042 4.042 11 C -0.139 4.139 12 C -0.090 4.090 13 C -0.142 4.142 14 C 0.155 3.845 15 N -0.419 5.419 16 N -0.456 5.456 17 C 0.044 3.956 18 C -0.171 4.171 19 C 0.483 3.517 20 O -0.555 6.555 21 C -0.137 4.137 22 H 0.258 0.742 23 H 0.004 0.996 24 H 0.007 0.993 25 H 0.124 0.876 26 H 0.158 0.842 27 H 0.127 0.873 28 H 0.349 0.651 29 H 0.139 0.861 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 -15.120 9.099 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.228 4.228 3 Si 0.936 3.064 4 H -0.203 1.203 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.644 4.644 8 H 0.059 0.941 9 C 0.007 3.993 10 C -0.043 4.043 11 C -0.158 4.158 12 C -0.109 4.109 13 C -0.163 4.163 14 C 0.064 3.936 15 N -0.233 5.233 16 N -0.182 5.182 17 C -0.083 4.083 18 C -0.212 4.212 19 C 0.272 3.728 20 O -0.431 6.431 21 C -0.157 4.157 22 H 0.067 0.933 23 H 0.022 0.978 24 H 0.025 0.975 25 H 0.142 0.858 26 H 0.175 0.825 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.157 0.843 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.250 -13.877 8.354 18.178 hybrid contribution 0.351 -0.876 0.343 1.004 sum 8.601 -14.753 8.697 19.164 Atomic orbital electron populations 1.70910 1.07721 1.30010 1.48236 1.27345 0.96565 1.06349 0.92572 0.82957 0.74181 0.71338 0.77916 1.20307 1.19766 1.19612 1.22186 0.94099 0.92394 1.55694 0.94050 1.18263 0.93434 0.92047 0.95599 1.20082 0.96529 0.94412 0.93247 1.21215 0.99288 0.97691 0.97606 1.21206 0.95785 0.95463 0.98418 1.20978 1.02567 1.01519 0.91196 1.17412 0.98001 0.93878 0.84277 1.45075 1.05548 1.61711 1.11010 1.62957 1.30172 1.18309 1.06751 1.23709 0.88065 0.98056 0.98492 1.23072 1.01363 1.04888 0.91859 1.22606 0.81179 0.77896 0.91114 1.90728 1.41451 1.54898 1.56031 1.20725 1.00718 0.95980 0.98280 0.93267 0.97801 0.97491 0.85772 0.82464 0.85475 0.83089 0.84294 0.87083 0.85193 0.84501 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.65 21.45 0.29 -57.14 16 2 C -0.03 -1.76 5.46 84.66 0.46 -1.29 16 3 Si 1.12 50.93 29.90 68.60 2.05 52.98 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.61 -35.33 9.09 25.60 0.23 -35.10 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.41 16 9 C 0.04 2.32 4.41 29.10 0.13 2.45 16 10 C -0.04 -1.91 5.07 -19.89 -0.10 -2.01 16 11 C -0.14 -5.58 9.69 22.29 0.22 -5.36 16 12 C -0.09 -3.05 10.04 22.25 0.22 -2.82 16 13 C -0.14 -4.97 9.10 22.39 0.20 -4.77 16 14 C 0.16 5.71 6.01 38.15 0.23 5.94 16 15 N -0.42 -12.49 3.43 -302.61 -1.04 -13.53 16 16 N -0.46 -9.91 7.54 -181.63 -1.37 -11.28 16 17 C 0.04 0.49 7.96 86.68 0.69 1.18 16 18 C -0.17 -2.45 7.11 30.81 0.22 -2.23 16 19 C 0.48 13.83 7.87 88.04 0.69 14.53 16 20 O -0.56 -20.77 16.89 -3.04 -0.05 -20.82 16 21 C -0.14 -5.64 9.46 22.39 0.21 -5.43 16 22 H 0.26 16.00 7.22 -92.71 -0.67 15.33 16 23 H 0.00 0.21 7.96 -2.39 -0.02 0.19 16 24 H 0.01 0.38 7.94 -2.39 -0.02 0.36 16 25 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 26 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.13 4.14 7.66 -2.91 -0.02 4.12 16 28 H 0.35 6.89 9.04 -210.72 -1.90 4.99 16 29 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -75.76 288.31 2.61 -73.15 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -0.68 Total: 11.55 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.41 Total: -34.92 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -2.12 Total: -81.94 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -75.76 2.61 -73.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260293645.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.366 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds