Wall clock time and date at job start Mon Mar 30 2020 04:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46911 * 2 1 4 4 C 1.53002 * 109.46855 * 119.99531 * 2 1 3 5 5 C 1.50696 * 109.47546 * 295.00390 * 4 2 1 6 6 H 1.08005 * 119.99769 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00295 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99667 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00370 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47281 * 59.99651 * 9 7 5 11 11 H 1.48495 * 109.47099 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46974 * 299.99667 * 9 7 5 13 13 C 1.52995 * 109.47322 * 240.00032 * 2 1 3 14 14 H 1.09003 * 109.38232 * 300.20596 * 13 2 1 15 15 C 1.52593 * 109.38290 * 180.52513 * 13 2 1 16 16 C 1.52587 * 110.64027 * 169.85561 * 15 13 2 17 17 C 1.53330 * 110.06434 * 69.99103 * 16 15 13 18 18 S 1.81674 * 108.86183 * 296.43287 * 17 16 15 19 19 O 1.42105 * 108.66219 * 299.83816 * 18 17 16 20 20 O 1.42099 * 108.66277 * 168.59432 * 18 17 16 21 21 C 1.53035 * 109.38703 * 60.00071 * 13 2 1 22 22 H 1.09002 * 109.47889 * 299.99787 * 1 2 3 23 23 H 1.09003 * 109.47244 * 60.00307 * 1 2 3 24 24 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47197 * 55.00924 * 4 2 1 26 26 H 1.09001 * 109.46833 * 175.00268 * 4 2 1 27 27 H 0.97002 * 119.99919 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.24026 * 290.15417 * 15 13 2 29 29 H 1.08998 * 109.24326 * 49.55610 * 15 13 2 30 30 H 1.09005 * 109.38323 * 190.14252 * 16 15 13 31 31 H 1.09003 * 109.38709 * 309.82627 * 16 15 13 32 32 H 1.09003 * 109.72595 * 176.55407 * 17 16 15 33 33 H 1.08997 * 109.51459 * 56.18112 * 17 16 15 34 34 H 1.09004 * 109.54987 * 63.94920 * 21 13 2 35 35 H 1.09004 * 109.54790 * 303.66477 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9930 -0.4016 3.7284 8 7 2.6762 -1.5186 3.8512 9 14 1.4982 0.5627 5.2497 10 1 0.0182 0.6682 5.3093 11 1 1.9933 -0.1372 6.4622 12 1 2.0893 1.9236 5.1871 13 6 2.0400 -0.7212 -1.2492 14 1 1.6729 -1.7476 -1.2496 15 6 3.5659 -0.7314 -1.2405 16 6 4.1038 -1.6523 -2.3318 17 6 3.8400 -1.0412 -3.7131 18 16 2.0454 -0.9261 -3.9714 19 8 1.4914 -2.2330 -3.9033 20 8 1.8017 -0.1265 -5.1205 21 6 1.5289 0.0017 -2.4974 22 1 -0.3635 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7198 1.2952 26 1 3.1262 -0.7993 1.2057 27 1 2.9235 -1.8416 4.7319 28 1 3.9328 0.2806 -1.4113 29 1 3.9173 -1.0813 -0.2699 30 1 5.1769 -1.7866 -2.1954 31 1 3.6082 -2.6208 -2.2648 32 1 4.2798 -1.6728 -4.4850 33 1 4.2798 -0.0450 -3.7605 34 1 1.9481 1.0072 -2.5339 35 1 0.4408 0.0596 -2.4655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260295619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:05 Heat of formation + Delta-G solvation = -100.277887 kcal Electronic energy + Delta-G solvation = -16697.253173 eV Core-core repulsion = 14014.543035 eV Total energy + Delta-G solvation = -2682.710138 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.25634 -36.84916 -35.96051 -34.36935 -32.53767 -30.16735 -28.01899 -26.53926 -24.44309 -22.37710 -20.97249 -19.19537 -18.69025 -16.79117 -16.36043 -16.20371 -15.57536 -14.85736 -14.46591 -14.40028 -13.50917 -13.35390 -13.21897 -12.92307 -12.33809 -12.08561 -11.96276 -11.92762 -11.53856 -11.43143 -11.26583 -10.92077 -10.88765 -10.82752 -10.60524 -10.50484 -10.31759 -9.83565 -9.70254 -9.12489 -8.98216 -8.36398 -6.03441 -4.04753 0.10054 2.72504 3.30140 3.35387 3.37292 3.69301 3.98994 4.42688 4.59913 4.61191 4.80432 4.88304 5.09760 5.22771 5.32799 5.43644 5.62792 5.69194 5.82468 5.88615 6.04260 6.11227 6.30435 6.38746 6.44274 6.53095 6.89847 7.02090 7.08591 7.62957 7.77467 7.96048 8.39321 9.01107 9.58894 11.07745 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045747 B = 0.005554 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.910456 B = 5040.587058 C = 5342.152614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.060 0.940 4 C 0.023 3.977 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.073 4.073 14 H 0.087 0.913 15 C -0.143 4.143 16 C -0.109 4.109 17 C -0.602 4.602 18 S 2.408 3.592 19 O -0.941 6.941 20 O -0.957 6.957 21 C -0.592 4.592 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.018 0.982 26 H 0.023 0.977 27 H 0.261 0.739 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 1.841 -12.808 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.013 4.013 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.092 4.092 14 H 0.105 0.895 15 C -0.180 4.180 16 C -0.147 4.147 17 C -0.731 4.731 18 S 2.593 3.407 19 O -0.938 6.938 20 O -0.954 6.954 21 C -0.722 4.722 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.776 1.385 -13.422 13.609 hybrid contribution 0.256 0.900 1.472 1.744 sum 2.032 2.284 -11.950 12.335 Atomic orbital electron populations 1.21827 0.96306 1.01190 1.00352 1.21181 0.95125 0.99203 0.93914 0.92134 1.19265 0.96418 0.95584 0.90076 1.21201 1.34930 1.08356 0.91065 0.92701 1.25000 0.95278 0.95058 0.99062 1.69941 1.38868 1.21100 1.23588 0.86705 0.78914 0.80091 0.82553 1.20307 1.21346 1.20335 1.21044 0.94944 1.00130 0.93098 0.89486 1.21923 0.95011 1.00133 1.00938 1.21372 1.03842 0.99799 0.89736 1.30255 1.25610 1.10392 1.06844 1.08196 0.78845 0.76408 0.77301 1.93575 1.75876 1.37274 1.87081 1.93559 1.84164 1.71075 1.46580 1.30342 1.12175 1.13413 1.16319 0.91722 0.94820 0.93310 0.96383 0.95853 0.92969 0.91219 0.87800 0.89872 0.89858 0.85469 0.85228 0.85152 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.66 37.16 0.32 -2.13 16 2 C -0.07 -1.36 1.92 -90.62 -0.17 -1.54 16 3 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.02 0.55 4.24 -27.88 -0.12 0.43 16 5 C -0.52 -13.75 8.41 -34.44 -0.29 -14.04 16 6 H 0.05 1.42 7.06 -52.48 -0.37 1.05 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.91 13.29 55.43 0.74 -25.18 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 C -0.07 -1.07 1.61 -90.81 -0.15 -1.21 16 14 H 0.09 1.33 8.01 -51.93 -0.42 0.91 16 15 C -0.14 -1.88 4.82 -27.15 -0.13 -2.01 16 16 C -0.11 -1.18 5.73 -26.77 -0.15 -1.34 16 17 C -0.60 -5.61 6.38 37.33 0.24 -5.37 16 18 S 2.41 28.84 5.30 -107.50 -0.57 28.27 16 19 O -0.94 -14.57 17.94 -57.82 -1.04 -15.60 16 20 O -0.96 -14.13 18.10 -57.82 -1.05 -15.18 16 21 C -0.59 -7.00 5.37 37.18 0.20 -6.80 16 22 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 23 H 0.03 0.48 6.34 -51.93 -0.33 0.16 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.57 5.95 -51.93 -0.31 0.26 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.10 1.60 5.78 -51.93 -0.30 1.30 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 32 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.14 1.54 6.24 -51.93 -0.32 1.22 16 LS Contribution 285.81 15.07 4.31 4.31 Total: -1.00 -33.14 285.81 -8.32 -41.46 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.34 Total: -1.58 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: -0.35 Total: -32.52 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.74 Total: -25.18 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -2.08 Total: -30.78 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 28.84 SS G_CDS: -0.57 Total: 28.27 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.14 -8.32 -41.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.821 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds