Wall clock time and date at job start Mon Mar 30 2020 04:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46911 * 2 1 4 4 C 1.53002 * 109.46855 * 119.99531 * 2 1 3 5 5 C 1.50696 * 109.47546 * 295.00390 * 4 2 1 6 6 H 1.08005 * 119.99769 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00295 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99667 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00370 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47281 * 59.99651 * 9 7 5 11 11 H 1.48495 * 109.47099 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46974 * 299.99667 * 9 7 5 13 13 C 1.52995 * 109.47322 * 240.00032 * 2 1 3 14 14 H 1.09003 * 109.38232 * 300.20596 * 13 2 1 15 15 C 1.52593 * 109.38290 * 180.52513 * 13 2 1 16 16 C 1.52587 * 110.64027 * 169.85561 * 15 13 2 17 17 C 1.53330 * 110.06434 * 69.99103 * 16 15 13 18 18 S 1.81674 * 108.86183 * 296.43287 * 17 16 15 19 19 O 1.42105 * 108.66219 * 299.83816 * 18 17 16 20 20 O 1.42099 * 108.66277 * 168.59432 * 18 17 16 21 21 C 1.53035 * 109.38703 * 60.00071 * 13 2 1 22 22 H 1.09002 * 109.47889 * 299.99787 * 1 2 3 23 23 H 1.09003 * 109.47244 * 60.00307 * 1 2 3 24 24 H 1.09000 * 109.46911 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47197 * 55.00924 * 4 2 1 26 26 H 1.09001 * 109.46833 * 175.00268 * 4 2 1 27 27 H 0.97002 * 119.99919 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.24026 * 290.15417 * 15 13 2 29 29 H 1.08998 * 109.24326 * 49.55610 * 15 13 2 30 30 H 1.09005 * 109.38323 * 190.14252 * 16 15 13 31 31 H 1.09003 * 109.38709 * 309.82627 * 16 15 13 32 32 H 1.09003 * 109.72595 * 176.55407 * 17 16 15 33 33 H 1.08997 * 109.51459 * 56.18112 * 17 16 15 34 34 H 1.09004 * 109.54987 * 63.94920 * 21 13 2 35 35 H 1.09004 * 109.54790 * 303.66477 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9930 -0.4016 3.7284 8 7 2.6762 -1.5186 3.8512 9 14 1.4982 0.5627 5.2497 10 1 0.0182 0.6682 5.3093 11 1 1.9933 -0.1372 6.4622 12 1 2.0893 1.9236 5.1871 13 6 2.0400 -0.7212 -1.2492 14 1 1.6729 -1.7476 -1.2496 15 6 3.5659 -0.7314 -1.2405 16 6 4.1038 -1.6523 -2.3318 17 6 3.8400 -1.0412 -3.7131 18 16 2.0454 -0.9261 -3.9714 19 8 1.4914 -2.2330 -3.9033 20 8 1.8017 -0.1265 -5.1205 21 6 1.5289 0.0017 -2.4974 22 1 -0.3635 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7198 1.2952 26 1 3.1262 -0.7993 1.2057 27 1 2.9235 -1.8416 4.7319 28 1 3.9328 0.2806 -1.4113 29 1 3.9173 -1.0813 -0.2699 30 1 5.1769 -1.7866 -2.1954 31 1 3.6082 -2.6208 -2.2648 32 1 4.2798 -1.6728 -4.4850 33 1 4.2798 -0.0450 -3.7605 34 1 1.9481 1.0072 -2.5339 35 1 0.4408 0.0596 -2.4655 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:05 Heat of formation + Delta-G solvation = -123.295780 kcal Electronic energy + Delta-G solvation = -16698.251304 eV Core-core repulsion = 14014.543035 eV Total energy + Delta-G solvation = -2683.708269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.46591 -37.93071 -37.02170 -35.76005 -34.28712 -31.52578 -29.20506 -28.11699 -25.85543 -23.89462 -22.08282 -20.56605 -19.69778 -18.53105 -17.55577 -17.28231 -16.62654 -16.49714 -15.84302 -15.49247 -14.80071 -14.74972 -14.30118 -14.10775 -13.72536 -13.51680 -13.18126 -13.05815 -13.01498 -12.80116 -12.67009 -12.45695 -12.31735 -12.19723 -11.96572 -11.73029 -11.63669 -11.34766 -11.14874 -10.79848 -10.56772 -10.43278 -8.14202 -6.21768 -0.83227 1.41607 1.42941 1.50478 1.82323 2.43894 2.77493 3.05053 3.19718 3.68317 3.70070 3.87568 3.90348 4.13025 4.25731 4.48368 4.48753 4.69767 4.71447 4.77611 4.86930 5.00616 5.06655 5.13286 5.25930 5.33155 5.43662 5.47591 5.52567 5.66888 5.92059 5.95994 6.35005 6.95346 7.45859 8.97028 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045747 B = 0.005554 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.910456 B = 5040.587058 C = 5342.152614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 H 0.067 0.933 4 C 0.026 3.974 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 C -0.071 4.071 14 H 0.071 0.929 15 C -0.144 4.144 16 C -0.110 4.110 17 C -0.580 4.580 18 S 2.419 3.581 19 O -0.983 6.983 20 O -0.984 6.984 21 C -0.590 4.590 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.038 0.962 25 H -0.015 1.015 26 H 0.012 0.988 27 H 0.260 0.740 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 3.497 -13.900 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 H 0.086 0.914 4 C -0.011 4.011 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.091 4.091 14 H 0.090 0.910 15 C -0.181 4.181 16 C -0.148 4.148 17 C -0.712 4.712 18 S 2.607 3.393 19 O -0.981 6.981 20 O -0.981 6.981 21 C -0.720 4.720 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.003 0.997 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.415 3.052 -14.528 15.040 hybrid contribution 0.083 0.369 1.821 1.860 sum 2.497 3.420 -12.707 13.395 Atomic orbital electron populations 1.21823 0.95863 1.00879 1.01173 1.21034 0.95541 0.99114 0.93191 0.91422 1.19181 0.95597 0.94188 0.92112 1.21679 1.34205 1.08548 0.92317 0.92284 1.25856 0.95455 0.96032 1.02359 1.70076 1.40379 1.22802 1.24168 0.85675 0.78726 0.78971 0.78714 1.19696 1.21291 1.19217 1.20901 0.96209 0.99231 0.92739 0.91027 1.21895 0.93802 1.02029 1.00396 1.21354 1.04856 0.98858 0.89745 1.30092 1.21952 1.12844 1.06353 1.07687 0.80118 0.74973 0.76511 1.93523 1.77837 1.39205 1.87493 1.93525 1.85423 1.71392 1.47749 1.30292 1.12778 1.14624 1.14338 0.93656 0.91208 0.94242 0.99703 0.97026 0.93075 0.88825 0.90883 0.87779 0.90847 0.83053 0.81994 0.82167 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 8.66 71.98 0.62 -4.23 16 2 C -0.07 -2.51 1.92 -10.80 -0.02 -2.53 16 3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.03 1.27 4.24 29.85 0.13 1.40 16 5 C -0.53 -28.53 8.41 25.60 0.22 -28.32 16 6 H 0.06 3.06 7.06 -2.91 -0.02 3.04 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 13 C -0.07 -2.03 1.61 -10.92 -0.02 -2.04 16 14 H 0.07 2.23 8.01 -2.39 -0.02 2.21 16 15 C -0.14 -3.56 4.82 30.32 0.15 -3.42 16 16 C -0.11 -2.11 5.73 30.57 0.18 -1.93 16 17 C -0.58 -8.56 6.38 72.09 0.46 -8.10 16 18 S 2.42 52.95 5.30 -56.49 -0.30 52.65 16 19 O -0.98 -29.90 17.94 -127.38 -2.28 -32.18 16 20 O -0.98 -26.92 18.10 -127.38 -2.31 -29.23 16 21 C -0.59 -12.51 5.37 71.99 0.39 -12.12 16 22 H 0.04 1.71 6.95 -2.39 -0.02 1.69 16 23 H 0.07 1.88 6.34 -2.39 -0.02 1.87 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H -0.02 -0.84 8.14 -2.38 -0.02 -0.86 16 26 H 0.01 0.58 5.95 -2.39 -0.01 0.57 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.07 2.28 5.78 -2.39 -0.01 2.27 16 30 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.07 1.57 8.01 -2.39 -0.02 1.55 16 32 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.16 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.14 2.86 6.24 -2.39 -0.01 2.84 16 Total: -1.00 -72.96 285.81 1.04 -71.92 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.06 Total: 7.33 kcal Atomic # 6 Polarization: -63.37 SS G_CDS: 2.56 Total: -60.81 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -4.59 Total: -61.41 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 52.95 SS G_CDS: -0.30 Total: 52.65 kcal Total: -72.96 1.04 -71.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.375 kcal (2) G-P(sol) polarization free energy of solvation -72.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds