Wall clock time and date at job start Mon Mar 30 2020 04:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39715 * 120.18955 * 93.87151 * 3 2 1 5 5 C 1.37821 * 119.89674 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.84851 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.47137 * 359.97438 * 6 5 4 8 8 C 1.52992 * 109.47338 * 120.00301 * 6 5 4 9 9 N 1.46905 * 109.46900 * 295.62698 * 8 6 5 10 10 C 1.53008 * 109.46869 * 240.00091 * 6 5 4 11 11 C 1.50696 * 109.46904 * 174.57524 * 10 6 5 12 12 H 1.08000 * 120.00046 * 354.96382 * 11 10 6 13 13 C 1.37878 * 119.99784 * 174.97154 * 11 10 6 14 14 N 1.31511 * 120.00105 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99824 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47208 * 89.99518 * 15 13 11 17 17 H 1.48498 * 109.47171 * 209.99488 * 15 13 11 18 18 H 1.48498 * 109.47418 * 329.99588 * 15 13 11 19 19 C 1.38508 * 120.29971 * 0.27905 * 5 4 3 20 20 C 1.38115 * 120.39059 * 359.44309 * 19 5 4 21 21 C 1.38647 * 120.08829 * 0.55151 * 20 19 5 22 22 O 1.35708 * 120.14658 * 179.70122 * 21 20 19 23 23 H 1.08002 * 120.05213 * 359.96135 * 4 3 2 24 24 H 1.09001 * 109.47715 * 175.62315 * 8 6 5 25 25 H 1.09007 * 109.47404 * 55.61905 * 8 6 5 26 26 H 1.00906 * 110.99895 * 174.79957 * 9 8 6 27 27 H 1.00903 * 110.99709 * 298.74504 * 9 8 6 28 28 H 1.08998 * 109.47288 * 294.57530 * 10 6 5 29 29 H 1.09006 * 109.46699 * 54.57567 * 10 6 5 30 30 H 0.97005 * 119.99880 * 180.02562 * 14 13 11 31 31 H 1.08005 * 119.80706 * 179.70507 * 19 5 4 32 32 H 1.07998 * 119.95252 * 180.25909 * 20 19 5 33 33 H 0.96695 * 114.00103 * 270.02561 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2706 0.0825 -1.2049 5 6 4.6488 0.0832 -1.1978 6 6 5.4055 0.1721 -2.4981 7 1 4.6992 0.2273 -3.3264 8 6 6.2843 1.4244 -2.4922 9 7 5.4324 2.6201 -2.4408 10 6 6.2863 -1.0683 -2.6614 11 6 6.9404 -1.0448 -4.0188 12 1 6.6850 -0.2712 -4.7279 13 6 7.8646 -2.0109 -4.3555 14 7 8.1758 -2.9526 -3.4919 15 14 8.6748 -1.9821 -6.0384 16 1 9.9161 -1.1693 -5.9764 17 1 9.0112 -3.3688 -6.4496 18 1 7.7413 -1.3853 -7.0272 19 6 5.3415 -0.0028 -0.0015 20 6 4.6593 -0.0785 1.1970 21 6 3.2729 -0.0803 1.2088 22 8 2.6014 -0.1607 2.3853 23 1 2.7345 0.1449 -2.1404 24 1 6.8894 1.4481 -3.3985 25 1 6.9374 1.4059 -1.6196 26 1 5.9889 3.4570 -2.3505 27 1 4.8315 2.6710 -3.2498 28 1 7.0544 -1.0728 -1.8880 29 1 5.6726 -1.9644 -2.5692 30 1 8.8263 -3.6321 -3.7287 31 1 6.4215 -0.0064 -0.0056 32 1 5.2066 -0.1410 2.1260 33 1 2.4078 -1.0654 2.6667 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260298546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:58 Heat of formation + Delta-G solvation = -26.268339 kcal Electronic energy + Delta-G solvation = -16943.516026 eV Core-core repulsion = 14160.863982 eV Total energy + Delta-G solvation = -2782.652044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03411 -38.65148 -37.57272 -36.36667 -34.72266 -32.66533 -32.23623 -30.15366 -27.10394 -25.02371 -24.51927 -23.39527 -21.59582 -19.71084 -18.64535 -18.30004 -16.97843 -16.76213 -16.53130 -16.25604 -15.69367 -15.16794 -15.01624 -14.65108 -14.41635 -14.20976 -14.07234 -13.86141 -13.24228 -13.17458 -13.15677 -12.96636 -12.65290 -12.38258 -12.11101 -11.64274 -11.47126 -11.28031 -11.08549 -10.48461 -9.89972 -9.42798 -9.29890 -8.13223 -6.21284 -0.18963 0.39799 1.43163 1.45050 1.53951 1.59809 1.96801 2.45032 2.80519 2.88149 3.21062 3.21853 3.85267 3.92638 4.05953 4.29761 4.41332 4.53275 4.61656 4.83074 4.94298 5.06811 5.14663 5.21771 5.29637 5.36653 5.55657 5.64038 5.82156 5.87641 5.94685 6.30186 6.39752 6.42524 6.78800 6.79191 6.94260 7.46779 8.97817 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.005300 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.957126 B = 5281.345292 C = 5395.553871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.286 3.714 3 C -0.071 4.071 4 C -0.053 4.053 5 C -0.057 4.057 6 C -0.034 4.034 7 H 0.065 0.935 8 C 0.085 3.915 9 N -0.847 5.847 10 C 0.039 3.961 11 C -0.528 4.528 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.951 3.049 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.067 4.067 20 C -0.137 4.137 21 C 0.147 3.853 22 O -0.502 6.502 23 H 0.137 0.863 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.346 0.654 27 H 0.341 0.659 28 H 0.008 0.992 29 H -0.010 1.010 30 H 0.261 0.739 31 H 0.132 0.868 32 H 0.160 0.840 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 6.925 7.205 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.028 4.028 3 C -0.075 4.075 4 C -0.073 4.073 5 C -0.057 4.057 6 C -0.053 4.053 7 H 0.083 0.917 8 C -0.046 4.046 9 N -0.377 5.377 10 C 0.001 3.999 11 C -0.566 4.566 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.777 3.223 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.085 4.085 20 C -0.155 4.155 21 C 0.100 3.900 22 O -0.315 6.315 23 H 0.154 0.846 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.026 0.974 29 H 0.008 0.992 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.178 0.822 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.303 7.055 7.889 12.319 hybrid contribution 1.461 -0.642 -1.799 2.405 sum -4.843 6.413 6.090 10.083 Atomic orbital electron populations 1.81191 1.12899 1.10947 1.08879 1.25653 0.92552 0.92323 0.92257 1.16377 0.83770 1.12464 0.94936 1.20970 0.93477 0.96548 0.96320 1.19800 0.92843 0.97317 0.95741 1.20148 0.96443 0.95740 0.92992 0.91687 1.21597 0.93835 0.89108 1.00070 1.58744 1.25752 1.04706 1.48526 1.18991 0.93485 0.91711 0.95670 1.21599 1.22796 1.11270 1.00948 0.92200 1.25786 0.97681 0.95337 1.00398 1.70069 1.34393 1.15752 1.36815 0.85657 0.79006 0.77132 0.80506 1.19998 1.21424 1.19063 1.21266 1.00930 0.94936 0.91414 1.21447 0.92329 1.02225 0.99487 1.18298 0.89977 0.98332 0.83406 1.84707 1.76636 1.34819 1.35382 0.84564 0.95596 0.91672 0.84101 0.84647 0.97362 0.99173 0.93005 0.85038 0.82226 0.72724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.86 18.54 19.00 0.35 -14.50 16 2 C 0.29 8.26 14.87 88.33 1.31 9.57 16 3 C -0.07 -1.90 5.75 -21.21 -0.12 -2.02 16 4 C -0.05 -1.48 9.37 22.53 0.21 -1.27 16 5 C -0.06 -1.74 4.49 -19.90 -0.09 -1.83 16 6 C -0.03 -1.21 2.16 -11.54 -0.02 -1.23 16 7 H 0.06 2.30 7.86 -2.39 -0.02 2.28 16 8 C 0.08 2.67 5.94 86.30 0.51 3.19 16 9 N -0.85 -21.25 9.29 -186.71 -1.74 -22.99 16 10 C 0.04 1.81 4.17 29.85 0.12 1.93 16 11 C -0.53 -27.07 8.25 25.60 0.21 -26.86 16 12 H 0.06 2.95 7.30 -2.91 -0.02 2.93 16 13 C 0.01 0.32 5.46 84.66 0.46 0.78 16 14 N -0.93 -53.15 13.29 21.45 0.28 -52.87 16 15 Si 0.95 41.84 29.54 68.60 2.03 43.86 16 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 19 C -0.07 -1.85 8.69 22.30 0.19 -1.66 16 20 C -0.14 -3.15 9.98 22.34 0.22 -2.92 16 21 C 0.15 3.51 6.71 22.83 0.15 3.66 16 22 O -0.50 -10.25 12.94 -90.28 -1.17 -11.42 16 23 H 0.14 3.57 7.93 -2.91 -0.02 3.55 16 24 H 0.03 0.91 6.97 -2.39 -0.02 0.90 16 25 H 0.06 2.05 7.25 -2.38 -0.02 2.04 16 26 H 0.35 7.24 9.08 -89.69 -0.81 6.43 16 27 H 0.34 7.92 9.05 -89.69 -0.81 7.11 16 28 H 0.01 0.40 7.55 -2.39 -0.02 0.38 16 29 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 30 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 31 H 0.13 3.68 7.11 -2.91 -0.02 3.65 16 32 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.41 4.62 9.06 -74.06 -0.67 3.95 16 Total: -1.00 -63.01 294.43 1.80 -61.21 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -1.13 Total: 15.36 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.17 Total: -18.66 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -1.10 Total: -90.36 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.17 Total: -11.42 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -63.01 1.80 -61.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260298546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.941 kcal (2) G-P(sol) polarization free energy of solvation -63.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds