Wall clock time and date at job start Mon Mar 30 2020 04:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46999 * 2 1 4 4 C 1.50706 * 109.46476 * 240.00165 * 2 1 3 5 5 H 1.07997 * 119.99704 * 239.99613 * 4 2 1 6 6 C 1.37880 * 119.99935 * 60.00388 * 4 2 1 7 7 N 1.31512 * 119.99856 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99976 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47175 * 59.99739 * 8 6 4 10 10 H 1.48496 * 109.47178 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46788 * 299.99726 * 8 6 4 12 12 C 1.53000 * 109.47016 * 120.00870 * 2 1 3 13 13 H 1.08990 * 108.10906 * 57.83051 * 12 2 1 14 14 C 1.53364 * 108.34527 * 300.61283 * 12 2 1 15 15 C 1.51509 * 107.14936 * 148.21036 * 14 12 2 16 16 C 1.52866 * 109.69372 * 101.93886 * 15 14 12 17 17 C 1.53742 * 115.72573 * 317.84454 * 16 15 14 18 18 S 1.79919 * 112.89633 * 315.88083 * 17 16 15 19 19 O 1.42092 * 108.58820 * 201.61078 * 18 17 16 20 20 O 1.42102 * 108.58413 * 332.66533 * 18 17 16 21 21 C 1.45204 * 108.34349 * 175.04733 * 12 2 1 22 22 H 1.09004 * 109.47222 * 186.89033 * 1 2 3 23 23 H 1.09001 * 109.46728 * 306.88448 * 1 2 3 24 24 H 1.08998 * 109.47378 * 66.88516 * 1 2 3 25 25 H 0.97001 * 120.00046 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.92018 * 28.79878 * 14 12 2 27 27 H 1.09002 * 109.98964 * 267.65627 * 14 12 2 28 28 H 1.09007 * 109.43197 * 341.87635 * 15 14 12 29 29 H 1.08994 * 109.39936 * 221.98675 * 15 14 12 30 30 H 1.09000 * 108.23623 * 196.21974 * 16 15 14 31 31 H 1.08995 * 108.23186 * 79.46298 * 16 15 14 32 32 H 1.09000 * 108.79668 * 195.00159 * 17 16 15 33 33 H 1.08997 * 108.70937 * 76.70320 * 17 16 15 34 34 H 1.09003 * 109.33037 * 66.32809 * 21 12 2 35 35 H 1.09008 * 109.32332 * 306.85411 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3221 -1.1194 -4.0081 9 1 1.8276 -2.5196 -4.0084 10 1 1.8265 -0.4197 -5.2205 11 1 3.8071 -1.1189 -4.0079 12 6 2.0400 -0.7214 1.2491 13 1 1.6329 -1.7325 1.2464 14 6 1.5020 0.0122 2.4838 15 6 1.3017 -1.0263 3.5686 16 6 2.4544 -0.9540 4.5700 17 6 3.8556 -0.7762 3.9630 18 16 4.1412 -1.8373 2.5384 19 8 5.5427 -1.9902 2.3612 20 8 3.3273 -2.9952 2.6658 21 6 3.4869 -0.8111 1.1664 22 1 -0.3634 -1.0203 0.1233 23 1 -0.3633 0.6168 0.8220 24 1 -0.3634 0.4034 -0.9451 25 1 0.7086 1.1615 -3.4843 26 1 0.5513 0.4900 2.2469 27 1 2.2213 0.7612 2.8150 28 1 1.2733 -2.0191 3.1194 29 1 0.3608 -0.8344 4.0842 30 1 2.4520 -1.8709 5.1595 31 1 2.2672 -0.1196 5.2458 32 1 4.6003 -1.0041 4.7256 33 1 3.9745 0.2630 3.6564 34 1 3.9145 0.1896 1.2287 35 1 3.7665 -1.2614 0.2139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260333643.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:42 Heat of formation + Delta-G solvation = -84.866363 kcal Electronic energy + Delta-G solvation = -17238.163062 eV Core-core repulsion = 14556.121217 eV Total energy + Delta-G solvation = -2682.041845 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.33380 -36.47508 -35.63009 -34.71099 -32.34355 -29.42422 -29.24218 -25.72137 -24.44499 -22.54576 -20.40421 -19.27937 -18.32319 -16.66600 -16.26057 -16.11843 -15.21357 -15.00218 -14.66404 -14.08180 -13.62335 -13.23004 -12.75361 -12.52899 -12.17699 -12.07009 -11.71369 -11.63070 -11.52627 -11.32483 -11.02309 -10.85485 -10.58990 -10.53842 -10.38051 -10.23998 -10.04259 -9.92278 -9.67319 -8.90547 -8.77568 -8.35229 -6.03856 -4.11260 0.41003 3.07514 3.29525 3.34190 3.37651 3.98460 4.22424 4.39319 4.69782 4.83140 5.00978 5.21238 5.29527 5.31356 5.43027 5.68172 5.73808 5.82881 5.89996 6.06820 6.21360 6.38463 6.50464 6.65087 6.77700 6.87018 6.97274 7.16806 7.30609 7.66421 7.91788 8.10862 8.38733 8.90949 9.54069 11.01054 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029366 B = 0.008247 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.246127 B = 3394.519032 C = 4042.591151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.057 3.943 3 H 0.028 0.972 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.087 4.087 13 H 0.079 0.921 14 C -0.136 4.136 15 C -0.149 4.149 16 C -0.087 4.087 17 C -0.621 4.621 18 S 2.388 3.612 19 O -0.962 6.962 20 O -0.941 6.941 21 C -0.541 4.541 22 H 0.025 0.975 23 H 0.013 0.987 24 H 0.084 0.916 25 H 0.261 0.739 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -0.241 11.896 12.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.046 0.954 4 C -0.556 4.556 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.107 4.107 13 H 0.097 0.903 14 C -0.173 4.173 15 C -0.187 4.187 16 C -0.126 4.126 17 C -0.749 4.749 18 S 2.574 3.426 19 O -0.959 6.959 20 O -0.938 6.938 21 C -0.673 4.673 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.493 -0.998 11.797 12.099 hybrid contribution 0.155 0.446 -0.812 0.939 sum 2.648 -0.552 10.986 11.314 Atomic orbital electron populations 1.21929 0.98665 0.98163 1.01202 1.18732 0.92527 0.95478 0.89580 0.95366 1.21213 1.31255 1.12369 0.90759 0.92530 1.24945 0.95023 0.94947 0.98952 1.69863 1.36466 1.22822 1.23477 0.86749 0.79327 0.79985 0.82568 1.20157 1.21273 1.20185 1.19797 0.91011 1.01796 0.98083 0.90329 1.21909 1.03283 0.97733 0.94424 1.21917 0.97668 1.01900 0.97177 1.21062 0.89832 1.02863 0.98836 1.30357 1.06199 1.17719 1.20581 1.08946 0.75327 0.78604 0.79712 1.93536 1.30708 1.86170 1.85455 1.93518 1.69901 1.44918 1.85492 1.28825 1.07104 1.14209 1.17149 0.95619 0.96812 0.89756 0.92930 0.89421 0.91952 0.89148 0.90906 0.91488 0.91354 0.85705 0.85266 0.86081 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.60 37.16 0.32 -2.87 16 2 C 0.06 1.29 1.85 -91.77 -0.17 1.12 16 3 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.52 -13.29 7.68 -34.44 -0.26 -13.56 16 5 H 0.06 1.42 6.29 -52.49 -0.33 1.09 16 6 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 7 N -0.89 -24.47 11.29 55.43 0.63 -23.84 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C -0.09 -1.58 1.12 -94.09 -0.11 -1.68 16 13 H 0.08 1.50 6.58 -51.93 -0.34 1.16 16 14 C -0.14 -2.00 4.97 -27.30 -0.14 -2.14 16 15 C -0.15 -1.94 5.46 -27.55 -0.15 -2.09 16 16 C -0.09 -0.98 5.29 -26.41 -0.14 -1.12 16 17 C -0.62 -6.99 5.56 37.54 0.21 -6.78 16 18 S 2.39 36.32 5.16 -107.50 -0.55 35.76 16 19 O -0.96 -17.47 18.10 -57.83 -1.05 -18.51 16 20 O -0.94 -16.89 15.38 -57.83 -0.89 -17.78 16 21 C -0.54 -8.98 4.94 33.50 0.17 -8.81 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.01 0.26 6.19 -51.93 -0.32 -0.06 16 24 H 0.08 2.15 5.91 -51.93 -0.31 1.84 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.09 1.34 5.53 -51.93 -0.29 1.05 16 27 H 0.06 0.79 6.34 -51.93 -0.33 0.46 16 28 H 0.09 1.33 5.53 -51.93 -0.29 1.04 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.12 1.18 8.14 -51.70 -0.42 0.76 16 33 H 0.13 1.20 7.07 -51.70 -0.37 0.84 16 34 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.15 2.80 5.77 -51.92 -0.30 2.50 16 LS Contribution 272.06 15.07 4.10 4.10 Total: -1.00 -31.27 272.06 -8.11 -39.38 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.96 Total: 1.49 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: -0.37 Total: -36.36 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.63 Total: -23.84 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.94 Total: -36.29 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 36.32 SS G_CDS: -0.55 Total: 35.76 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.27 -8.11 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333643.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.488 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds