Wall clock time and date at job start Mon Mar 30 2020 04:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46999 * 2 1 4 4 C 1.50706 * 109.46476 * 240.00165 * 2 1 3 5 5 H 1.07997 * 119.99704 * 239.99613 * 4 2 1 6 6 C 1.37880 * 119.99935 * 60.00388 * 4 2 1 7 7 N 1.31512 * 119.99856 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99976 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47175 * 59.99739 * 8 6 4 10 10 H 1.48496 * 109.47178 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46788 * 299.99726 * 8 6 4 12 12 C 1.53000 * 109.47016 * 120.00870 * 2 1 3 13 13 H 1.08990 * 108.10906 * 57.83051 * 12 2 1 14 14 C 1.53364 * 108.34527 * 300.61283 * 12 2 1 15 15 C 1.51509 * 107.14936 * 148.21036 * 14 12 2 16 16 C 1.52866 * 109.69372 * 101.93886 * 15 14 12 17 17 C 1.53742 * 115.72573 * 317.84454 * 16 15 14 18 18 S 1.79919 * 112.89633 * 315.88083 * 17 16 15 19 19 O 1.42092 * 108.58820 * 201.61078 * 18 17 16 20 20 O 1.42102 * 108.58413 * 332.66533 * 18 17 16 21 21 C 1.45204 * 108.34349 * 175.04733 * 12 2 1 22 22 H 1.09004 * 109.47222 * 186.89033 * 1 2 3 23 23 H 1.09001 * 109.46728 * 306.88448 * 1 2 3 24 24 H 1.08998 * 109.47378 * 66.88516 * 1 2 3 25 25 H 0.97001 * 120.00046 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.92018 * 28.79878 * 14 12 2 27 27 H 1.09002 * 109.98964 * 267.65627 * 14 12 2 28 28 H 1.09007 * 109.43197 * 341.87635 * 15 14 12 29 29 H 1.08994 * 109.39936 * 221.98675 * 15 14 12 30 30 H 1.09000 * 108.23623 * 196.21974 * 16 15 14 31 31 H 1.08995 * 108.23186 * 79.46298 * 16 15 14 32 32 H 1.09000 * 108.79668 * 195.00159 * 17 16 15 33 33 H 1.08997 * 108.70937 * 76.70320 * 17 16 15 34 34 H 1.09003 * 109.33037 * 66.32809 * 21 12 2 35 35 H 1.09008 * 109.32332 * 306.85411 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3221 -1.1194 -4.0081 9 1 1.8276 -2.5196 -4.0084 10 1 1.8265 -0.4197 -5.2205 11 1 3.8071 -1.1189 -4.0079 12 6 2.0400 -0.7214 1.2491 13 1 1.6329 -1.7325 1.2464 14 6 1.5020 0.0122 2.4838 15 6 1.3017 -1.0263 3.5686 16 6 2.4544 -0.9540 4.5700 17 6 3.8556 -0.7762 3.9630 18 16 4.1412 -1.8373 2.5384 19 8 5.5427 -1.9902 2.3612 20 8 3.3273 -2.9952 2.6658 21 6 3.4869 -0.8111 1.1664 22 1 -0.3634 -1.0203 0.1233 23 1 -0.3633 0.6168 0.8220 24 1 -0.3634 0.4034 -0.9451 25 1 0.7086 1.1615 -3.4843 26 1 0.5513 0.4900 2.2469 27 1 2.2213 0.7612 2.8150 28 1 1.2733 -2.0191 3.1194 29 1 0.3608 -0.8344 4.0842 30 1 2.4520 -1.8709 5.1595 31 1 2.2672 -0.1196 5.2458 32 1 4.6003 -1.0041 4.7256 33 1 3.9745 0.2630 3.6564 34 1 3.9145 0.1896 1.2287 35 1 3.7665 -1.2614 0.2139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333643.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:41 Heat of formation + Delta-G solvation = -106.206120 kcal Electronic energy + Delta-G solvation = -17239.088423 eV Core-core repulsion = 14556.121217 eV Total energy + Delta-G solvation = -2682.967206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66892 -37.83061 -36.94972 -36.05657 -34.06065 -30.98361 -30.48711 -27.36694 -25.84503 -24.04491 -21.57162 -20.82754 -19.53401 -18.42637 -17.54941 -17.45187 -16.60053 -16.44807 -16.04315 -15.31339 -15.01481 -14.73120 -14.15149 -13.87817 -13.60299 -13.29072 -13.08160 -12.99741 -12.94695 -12.81554 -12.67584 -12.46873 -12.18131 -12.02976 -11.94647 -11.80033 -11.33252 -11.26871 -10.94922 -10.59505 -10.52267 -10.29799 -8.07071 -6.18993 -0.79014 1.39603 1.41013 1.47221 1.91120 2.42763 2.82802 3.12179 3.20700 3.73983 3.85813 3.95281 4.09156 4.24333 4.27208 4.48698 4.69565 4.73760 4.94345 4.95976 5.02630 5.05387 5.24514 5.30715 5.35918 5.42788 5.47759 5.59714 5.63210 5.69524 6.05165 6.23944 6.43635 6.92875 7.48512 8.96215 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029366 B = 0.008247 C = 0.006925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.246127 B = 3394.519032 C = 4042.591151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.051 3.949 3 H 0.009 0.991 4 C -0.529 4.529 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.913 5.913 8 Si 0.936 3.064 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.272 1.272 12 C -0.077 4.077 13 H 0.059 0.941 14 C -0.133 4.133 15 C -0.151 4.151 16 C -0.093 4.093 17 C -0.597 4.597 18 S 2.401 3.599 19 O -0.995 6.995 20 O -0.975 6.975 21 C -0.558 4.558 22 H 0.022 0.978 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.259 0.741 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.143 0.857 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 0.454 14.427 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.031 3.969 3 H 0.027 0.973 4 C -0.567 4.567 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.763 3.237 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.197 1.197 12 C -0.097 4.097 13 H 0.078 0.922 14 C -0.170 4.170 15 C -0.188 4.188 16 C -0.131 4.131 17 C -0.729 4.729 18 S 2.591 3.409 19 O -0.992 6.992 20 O -0.972 6.972 21 C -0.688 4.688 22 H 0.041 0.959 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.009 -0.333 14.271 14.589 hybrid contribution -0.017 0.242 -1.526 1.545 sum 2.992 -0.091 12.745 13.092 Atomic orbital electron populations 1.21807 0.98642 0.98275 1.00619 1.18726 0.92619 0.94564 0.90984 0.97306 1.21657 1.30649 1.12198 0.92209 0.92908 1.25611 0.95559 0.95748 1.01466 1.69983 1.37650 1.24014 1.23693 0.85947 0.78969 0.78934 0.79891 1.20134 1.20994 1.19726 1.19682 0.91746 1.00572 0.97685 0.92240 1.21898 1.03450 0.98458 0.93189 1.21888 0.99877 0.99915 0.97142 1.21170 0.88480 1.04889 0.98598 1.30136 1.07568 1.17501 1.17728 1.08272 0.73866 0.78434 0.80329 1.93493 1.32260 1.86896 1.86522 1.93476 1.70275 1.47299 1.86147 1.28842 1.06489 1.15856 1.17619 0.95887 0.93901 0.92982 0.93186 0.90094 0.89062 0.91477 0.88819 0.90725 0.87871 0.82578 0.82214 0.83915 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 8.60 71.98 0.62 -5.55 16 2 C 0.05 2.35 1.85 -11.54 -0.02 2.33 16 3 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 4 C -0.53 -27.94 7.68 25.60 0.20 -27.74 16 5 H 0.05 2.75 6.29 -2.91 -0.02 2.74 16 6 C 0.01 0.80 5.28 84.66 0.45 1.25 16 7 N -0.91 -51.65 11.29 21.45 0.24 -51.41 16 8 Si 0.94 43.48 29.54 68.60 2.03 45.50 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C -0.08 -2.77 1.12 -13.04 -0.01 -2.78 16 13 H 0.06 2.33 6.58 -2.39 -0.02 2.31 16 14 C -0.13 -3.54 4.97 30.23 0.15 -3.39 16 15 C -0.15 -3.43 5.46 30.06 0.16 -3.27 16 16 C -0.09 -1.61 5.29 30.80 0.16 -1.45 16 17 C -0.60 -10.47 5.56 72.23 0.40 -10.07 16 18 S 2.40 69.57 5.16 -56.49 -0.29 69.28 16 19 O -0.99 -35.15 18.10 -127.37 -2.31 -37.46 16 20 O -0.97 -34.59 15.38 -127.37 -1.96 -36.55 16 21 C -0.56 -18.36 4.94 69.61 0.34 -18.01 16 22 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.04 1.65 6.19 -2.39 -0.01 1.63 16 24 H 0.05 2.71 5.91 -2.39 -0.01 2.70 16 25 H 0.26 14.10 8.31 -92.71 -0.77 13.32 16 26 H 0.08 2.27 5.53 -2.39 -0.01 2.25 16 27 H 0.09 1.89 6.34 -2.39 -0.02 1.87 16 28 H 0.07 1.88 5.53 -2.38 -0.01 1.86 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.16 2.00 8.14 -2.53 -0.02 1.98 16 33 H 0.16 1.97 7.07 -2.53 -0.02 1.95 16 34 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.12 4.72 5.77 -2.38 -0.01 4.71 16 Total: -1.00 -69.67 272.06 1.24 -68.43 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.08 Total: 10.90 kcal Atomic # 6 Polarization: -71.14 SS G_CDS: 2.45 Total: -68.69 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.24 Total: -51.41 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -4.26 Total: -74.01 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 69.57 SS G_CDS: -0.29 Total: 69.28 kcal Total: -69.67 1.24 -68.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333643.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.780 kcal (2) G-P(sol) polarization free energy of solvation -69.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds