Wall clock time and date at job start Mon Mar 30 2020 04:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47283 * 2 1 4 4 C 1.50698 * 109.46964 * 119.99678 * 2 1 3 5 5 H 1.08010 * 120.00412 * 119.99712 * 4 2 1 6 6 C 1.37877 * 120.00097 * 300.00532 * 4 2 1 7 7 N 1.31508 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47482 * 89.99227 * 8 6 4 10 10 H 1.48495 * 109.47152 * 209.99748 * 8 6 4 11 11 H 1.48507 * 109.46795 * 329.99289 * 8 6 4 12 12 C 1.53001 * 109.47485 * 239.99525 * 2 1 3 13 13 H 1.08996 * 109.19078 * 299.39037 * 12 2 1 14 14 C 1.44566 * 109.20849 * 58.80057 * 12 2 1 15 15 C 1.53293 * 115.18649 * 184.24654 * 14 12 2 16 16 C 1.51262 * 105.01638 * 266.59148 * 15 14 12 17 17 C 1.54649 * 109.55582 * 105.23274 * 16 15 14 18 18 S 1.82293 * 111.13326 * 320.51322 * 17 16 15 19 19 O 1.42105 * 107.93794 * 203.69641 * 18 17 16 20 20 O 1.42104 * 107.93680 * 74.41626 * 18 17 16 21 21 C 1.55155 * 109.23037 * 180.02562 * 12 2 1 22 22 H 1.08996 * 109.47143 * 300.00607 * 1 2 3 23 23 H 1.09006 * 109.46404 * 60.00503 * 1 2 3 24 24 H 1.09004 * 109.47283 * 179.97438 * 1 2 3 25 25 H 0.97005 * 120.00100 * 179.97438 * 7 6 4 26 26 H 1.09006 * 108.35855 * 62.76131 * 14 12 2 27 27 H 1.09000 * 108.19366 * 305.61679 * 14 12 2 28 28 H 1.09006 * 110.32231 * 147.72138 * 15 14 12 29 29 H 1.08995 * 110.32566 * 25.46966 * 15 14 12 30 30 H 1.08990 * 109.45856 * 345.20036 * 16 15 14 31 31 H 1.09003 * 109.44393 * 225.24091 * 16 15 14 32 32 H 1.08999 * 109.14478 * 200.09319 * 17 16 15 33 33 H 1.09000 * 109.10497 * 80.90827 * 17 16 15 34 34 H 1.09002 * 109.44922 * 45.19128 * 21 12 2 35 35 H 1.08997 * 109.44631 * 285.24667 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9488 5.1123 11 1 2.4877 -2.5653 3.7124 12 6 2.0401 -0.7213 -1.2492 13 1 1.6832 -1.7512 -1.2390 14 6 1.5319 -0.0523 -2.4256 15 6 1.8776 -0.7248 -3.7591 16 6 3.1472 -0.0459 -4.2229 17 6 4.3491 -0.9958 -4.0115 18 16 4.1990 -1.9058 -2.4391 19 8 5.5028 -2.3036 -2.0375 20 8 3.2043 -2.9069 -2.6060 21 6 3.5916 -0.7186 -1.2431 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7086 1.1614 3.4844 26 1 1.9279 0.9632 -2.4410 27 1 0.4467 0.0059 -2.3420 28 1 1.0774 -0.5657 -4.4819 29 1 2.0503 -1.7908 -3.6119 30 1 3.3010 0.8677 -3.6487 31 1 3.0611 0.2006 -5.2812 32 1 5.2690 -0.4113 -3.9998 33 1 4.3893 -1.7090 -4.8348 34 1 3.9512 -0.9874 -0.2498 35 1 3.9537 0.2760 -1.5034 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260333644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:44 Heat of formation + Delta-G solvation = -80.559577 kcal Electronic energy + Delta-G solvation = -17256.472551 eV Core-core repulsion = 14574.617463 eV Total energy + Delta-G solvation = -2681.855088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.53104 -36.42895 -35.67634 -34.73437 -32.33674 -29.36677 -29.01813 -25.58633 -24.59300 -22.43150 -20.94404 -19.18234 -18.28628 -16.76344 -16.29445 -16.03247 -15.49721 -14.74544 -14.33790 -14.05689 -13.56525 -13.36142 -12.97767 -12.55462 -12.17319 -12.08015 -11.75465 -11.59908 -11.49525 -11.35884 -11.02259 -10.86966 -10.61906 -10.53017 -10.38243 -10.21460 -10.05145 -9.78352 -9.64744 -9.07672 -8.78832 -8.35870 -6.02603 -4.09077 0.34703 3.17900 3.29242 3.36510 3.41016 3.96965 4.20857 4.41183 4.60507 4.76180 5.04035 5.06459 5.24619 5.29439 5.40924 5.60000 5.66770 5.86339 5.90414 6.06153 6.22789 6.36216 6.44084 6.70791 6.78419 6.83525 7.00746 7.14456 7.28664 7.68435 7.92718 8.10672 8.39904 8.93509 9.56321 11.02955 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.008320 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.372631 B = 3364.425743 C = 4009.583895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 H 0.029 0.971 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.060 4.060 13 H 0.085 0.915 14 C -0.134 4.134 15 C -0.182 4.182 16 C -0.100 4.100 17 C -0.612 4.612 18 S 2.412 3.588 19 O -0.964 6.964 20 O -0.943 6.943 21 C -0.594 4.594 22 H 0.083 0.917 23 H 0.013 0.987 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.155 0.845 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.379 0.326 -12.445 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.047 0.953 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.079 4.079 13 H 0.103 0.897 14 C -0.171 4.171 15 C -0.219 4.219 16 C -0.138 4.138 17 C -0.740 4.740 18 S 2.597 3.403 19 O -0.961 6.961 20 O -0.940 6.940 21 C -0.726 4.726 22 H 0.101 0.899 23 H 0.032 0.968 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.172 0.828 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.532 -0.428 -12.192 12.701 hybrid contribution 0.343 0.422 0.730 0.911 sum 3.875 -0.006 -11.462 12.099 Atomic orbital electron populations 1.21923 0.98496 0.99310 1.00260 1.18675 0.92516 0.95489 0.89639 0.95307 1.21202 1.31218 1.12320 0.90627 0.92545 1.24944 0.95023 0.94955 0.98964 1.69877 1.36634 1.22909 1.23339 0.86686 0.78645 0.80366 0.82949 1.20664 1.21200 1.19734 1.19776 0.87764 1.02684 0.97687 0.89692 1.20660 1.03735 0.99673 0.93048 1.22352 0.97623 1.03343 0.98630 1.21599 0.91493 0.97457 1.03251 1.30763 1.07300 1.13178 1.22770 1.08088 0.74989 0.78753 0.78451 1.93516 1.40037 1.81024 1.81523 1.93468 1.60103 1.54946 1.85494 1.30510 1.08963 1.16049 1.17095 0.89861 0.96815 0.95321 0.93020 0.91930 0.90392 0.90225 0.87609 0.90037 0.90854 0.85758 0.85572 0.82761 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.52 37.16 0.32 -2.93 16 2 C 0.06 1.30 1.87 -91.77 -0.17 1.13 16 3 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.52 -13.47 7.62 -34.44 -0.26 -13.73 16 5 H 0.06 1.46 6.83 -52.48 -0.36 1.10 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C -0.06 -1.11 1.32 -93.41 -0.12 -1.23 16 13 H 0.08 1.70 7.11 -51.93 -0.37 1.33 16 14 C -0.13 -2.04 4.05 -30.51 -0.12 -2.17 16 15 C -0.18 -2.31 5.79 -27.46 -0.16 -2.47 16 16 C -0.10 -1.05 5.60 -26.74 -0.15 -1.20 16 17 C -0.61 -6.59 6.49 38.02 0.25 -6.34 16 18 S 2.41 36.79 4.89 -107.50 -0.53 36.27 16 19 O -0.96 -17.78 18.05 -57.93 -1.05 -18.83 16 20 O -0.94 -17.01 14.11 -57.93 -0.82 -17.83 16 21 C -0.59 -9.83 5.06 38.30 0.19 -9.63 16 22 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 23 H 0.01 0.26 6.27 -51.93 -0.33 -0.07 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.06 0.88 6.74 -51.93 -0.35 0.53 16 27 H 0.08 1.22 5.80 -51.93 -0.30 0.92 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.11 1.50 4.47 -51.93 -0.23 1.27 16 30 H 0.08 0.79 6.41 -51.93 -0.33 0.46 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.15 2.86 6.31 -51.74 -0.33 2.53 16 35 H 0.12 1.64 7.69 -51.74 -0.40 1.24 16 LS Contribution 271.71 15.07 4.09 4.09 Total: -1.00 -31.67 271.71 -7.99 -39.66 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.98 Total: 1.67 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: -0.33 Total: -36.98 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.63 Total: -24.07 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.86 Total: -36.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 36.79 SS G_CDS: -0.53 Total: 36.27 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.67 -7.99 -39.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.896 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds