Wall clock time and date at job start Mon Mar 30 2020 04:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47283 * 2 1 4 4 C 1.50698 * 109.46964 * 119.99678 * 2 1 3 5 5 H 1.08010 * 120.00412 * 119.99712 * 4 2 1 6 6 C 1.37877 * 120.00097 * 300.00532 * 4 2 1 7 7 N 1.31508 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47482 * 89.99227 * 8 6 4 10 10 H 1.48495 * 109.47152 * 209.99748 * 8 6 4 11 11 H 1.48507 * 109.46795 * 329.99289 * 8 6 4 12 12 C 1.53001 * 109.47485 * 239.99525 * 2 1 3 13 13 H 1.08996 * 109.19078 * 299.39037 * 12 2 1 14 14 C 1.44566 * 109.20849 * 58.80057 * 12 2 1 15 15 C 1.53293 * 115.18649 * 184.24654 * 14 12 2 16 16 C 1.51262 * 105.01638 * 266.59148 * 15 14 12 17 17 C 1.54649 * 109.55582 * 105.23274 * 16 15 14 18 18 S 1.82293 * 111.13326 * 320.51322 * 17 16 15 19 19 O 1.42105 * 107.93794 * 203.69641 * 18 17 16 20 20 O 1.42104 * 107.93680 * 74.41626 * 18 17 16 21 21 C 1.55155 * 109.23037 * 180.02562 * 12 2 1 22 22 H 1.08996 * 109.47143 * 300.00607 * 1 2 3 23 23 H 1.09006 * 109.46404 * 60.00503 * 1 2 3 24 24 H 1.09004 * 109.47283 * 179.97438 * 1 2 3 25 25 H 0.97005 * 120.00100 * 179.97438 * 7 6 4 26 26 H 1.09006 * 108.35855 * 62.76131 * 14 12 2 27 27 H 1.09000 * 108.19366 * 305.61679 * 14 12 2 28 28 H 1.09006 * 110.32231 * 147.72138 * 15 14 12 29 29 H 1.08995 * 110.32566 * 25.46966 * 15 14 12 30 30 H 1.08990 * 109.45856 * 345.20036 * 16 15 14 31 31 H 1.09003 * 109.44393 * 225.24091 * 16 15 14 32 32 H 1.08999 * 109.14478 * 200.09319 * 17 16 15 33 33 H 1.09000 * 109.10497 * 80.90827 * 17 16 15 34 34 H 1.09002 * 109.44922 * 45.19128 * 21 12 2 35 35 H 1.08997 * 109.44631 * 285.24667 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9488 5.1123 11 1 2.4877 -2.5653 3.7124 12 6 2.0401 -0.7213 -1.2492 13 1 1.6832 -1.7512 -1.2390 14 6 1.5319 -0.0523 -2.4256 15 6 1.8776 -0.7248 -3.7591 16 6 3.1472 -0.0459 -4.2229 17 6 4.3491 -0.9958 -4.0115 18 16 4.1990 -1.9058 -2.4391 19 8 5.5028 -2.3036 -2.0375 20 8 3.2043 -2.9069 -2.6060 21 6 3.5916 -0.7186 -1.2431 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7086 1.1614 3.4844 26 1 1.9279 0.9632 -2.4410 27 1 0.4467 0.0059 -2.3420 28 1 1.0774 -0.5657 -4.4819 29 1 2.0503 -1.7908 -3.6119 30 1 3.3010 0.8677 -3.6487 31 1 3.0611 0.2006 -5.2812 32 1 5.2690 -0.4113 -3.9998 33 1 4.3893 -1.7090 -4.8348 34 1 3.9512 -0.9874 -0.2498 35 1 3.9537 0.2760 -1.5034 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:44 Heat of formation + Delta-G solvation = -102.342598 kcal Electronic energy + Delta-G solvation = -17257.417133 eV Core-core repulsion = 14574.617463 eV Total energy + Delta-G solvation = -2682.799671 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.83864 -37.78338 -36.98066 -36.11295 -34.05486 -30.98773 -30.23462 -27.30191 -26.04005 -23.81154 -22.14160 -20.72979 -19.50483 -18.41253 -17.68462 -17.42638 -16.78905 -16.49882 -15.60741 -15.32272 -14.70882 -14.62543 -14.45578 -14.12318 -13.67177 -13.32251 -13.09744 -12.98627 -12.95296 -12.83111 -12.68874 -12.41708 -12.24423 -12.09974 -11.93593 -11.69221 -11.37015 -11.18319 -10.89976 -10.69809 -10.62346 -10.38927 -8.09156 -6.20516 -0.82717 1.36991 1.39729 1.48458 2.02857 2.41709 2.82705 3.07316 3.18904 3.64282 3.81306 3.92183 4.02654 4.13672 4.33921 4.56077 4.69721 4.72218 4.89981 4.93398 4.98200 5.09960 5.17186 5.31009 5.33526 5.39588 5.41119 5.55437 5.65222 5.66554 6.02820 6.18736 6.41158 6.90726 7.46998 8.94921 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029209 B = 0.008320 C = 0.006982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.372631 B = 3364.425743 C = 4009.583895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.051 3.949 3 H 0.011 0.989 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.913 5.913 8 Si 0.937 3.063 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.274 1.274 12 C -0.052 4.052 13 H 0.061 0.939 14 C -0.136 4.136 15 C -0.181 4.181 16 C -0.103 4.103 17 C -0.576 4.576 18 S 2.413 3.587 19 O -1.003 7.003 20 O -0.980 6.980 21 C -0.606 4.606 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.020 0.980 25 H 0.260 0.740 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 1.175 -15.070 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.032 3.968 3 H 0.029 0.971 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.763 3.237 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.199 1.199 12 C -0.071 4.071 13 H 0.079 0.921 14 C -0.173 4.173 15 C -0.218 4.218 16 C -0.141 4.141 17 C -0.710 4.710 18 S 2.603 3.397 19 O -1.000 7.000 20 O -0.977 6.977 21 C -0.736 4.736 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.142 0.858 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.373 0.396 -14.755 15.395 hybrid contribution 0.071 0.177 1.469 1.481 sum 4.444 0.572 -13.287 14.022 Atomic orbital electron populations 1.21799 0.98479 0.98749 1.00298 1.18656 0.92627 0.94623 0.90921 0.97059 1.21590 1.30737 1.12102 0.92193 0.93341 1.25607 0.95504 0.95747 1.01461 1.69987 1.37648 1.23984 1.23694 0.85875 0.78353 0.79245 0.80188 1.20068 1.20798 1.19875 1.19558 0.89325 1.00996 0.97269 0.92078 1.20651 1.03081 1.00462 0.93132 1.22331 0.99927 1.02250 0.97330 1.21722 0.89484 0.97263 1.05639 1.30472 1.09406 1.13394 1.17694 1.07814 0.73405 0.78579 0.79916 1.93463 1.41164 1.82079 1.83330 1.93429 1.60828 1.57056 1.86357 1.30508 1.07416 1.18703 1.16968 0.92840 0.93704 0.96069 0.93121 0.90196 0.91224 0.87953 0.89241 0.88690 0.87313 0.82378 0.82971 0.85785 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.30 8.52 71.98 0.61 -5.69 16 2 C 0.05 2.41 1.87 -11.54 -0.02 2.39 16 3 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 4 C -0.53 -28.53 7.62 25.60 0.20 -28.34 16 5 H 0.05 2.62 6.83 -2.91 -0.02 2.60 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.91 -52.02 11.32 21.45 0.24 -51.78 16 8 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 12 C -0.05 -1.94 1.32 -12.60 -0.02 -1.96 16 13 H 0.06 2.54 7.11 -2.39 -0.02 2.52 16 14 C -0.14 -3.88 4.05 28.14 0.11 -3.77 16 15 C -0.18 -3.94 5.79 30.12 0.17 -3.77 16 16 C -0.10 -1.58 5.60 30.59 0.17 -1.40 16 17 C -0.58 -9.47 6.49 72.54 0.47 -9.00 16 18 S 2.41 70.87 4.89 -56.49 -0.28 70.60 16 19 O -1.00 -36.65 18.05 -127.28 -2.30 -38.94 16 20 O -0.98 -35.33 14.11 -127.28 -1.80 -37.13 16 21 C -0.61 -19.92 5.06 72.72 0.37 -19.55 16 22 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 23 H 0.04 1.75 6.27 -2.38 -0.01 1.74 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 26 H 0.08 1.99 6.74 -2.38 -0.02 1.98 16 27 H 0.07 2.07 5.80 -2.39 -0.01 2.05 16 28 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.09 2.33 4.47 -2.39 -0.01 2.32 16 30 H 0.09 1.27 6.41 -2.39 -0.02 1.26 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.16 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.12 4.82 6.31 -2.50 -0.02 4.80 16 35 H 0.15 3.85 7.69 -2.51 -0.02 3.83 16 Total: -1.00 -71.48 271.71 1.49 -69.98 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.08 Total: 10.94 kcal Atomic # 6 Polarization: -72.29 SS G_CDS: 2.52 Total: -69.77 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.24 Total: -51.78 kcal Atomic # 8 Polarization: -71.98 SS G_CDS: -4.09 Total: -76.07 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 70.87 SS G_CDS: -0.28 Total: 70.60 kcal Total: -71.48 1.49 -69.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.358 kcal (2) G-P(sol) polarization free energy of solvation -71.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds