Wall clock time and date at job start Mon Mar 30 2020 04:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47286 * 2 1 4 4 C 1.50700 * 109.47262 * 120.00440 * 2 1 3 5 5 H 1.07997 * 120.00453 * 119.99411 * 4 2 1 6 6 C 1.37877 * 119.99546 * 300.00112 * 4 2 1 7 7 N 1.31514 * 120.00092 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99834 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47155 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47073 * 119.99873 * 8 6 4 11 11 H 1.48496 * 109.46912 * 239.99365 * 8 6 4 12 12 C 1.53004 * 109.47004 * 239.99868 * 2 1 3 13 13 H 1.09002 * 108.25773 * 300.00292 * 12 2 1 14 14 C 1.53364 * 108.34688 * 182.70294 * 12 2 1 15 15 C 1.51515 * 107.14295 * 148.38280 * 14 12 2 16 16 C 1.52867 * 109.69482 * 101.94681 * 15 14 12 17 17 C 1.53745 * 115.72184 * 317.83874 * 16 15 14 18 18 S 1.79922 * 112.89777 * 315.88797 * 17 16 15 19 19 O 1.42097 * 108.58609 * 201.60753 * 18 17 16 20 20 O 1.42102 * 108.58493 * 332.65102 * 18 17 16 21 21 C 1.45197 * 108.34716 * 57.30104 * 12 2 1 22 22 H 1.09003 * 109.46984 * 59.99390 * 1 2 3 23 23 H 1.08995 * 109.47738 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46986 * 300.00254 * 1 2 3 25 25 H 0.97008 * 119.99685 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.92128 * 267.78958 * 14 12 2 27 27 H 1.09002 * 109.91778 * 28.97859 * 14 12 2 28 28 H 1.09000 * 109.42976 * 222.01287 * 15 14 12 29 29 H 1.08999 * 109.43447 * 341.87309 * 15 14 12 30 30 H 1.09001 * 108.23507 * 79.46366 * 16 15 14 31 31 H 1.09007 * 108.22991 * 196.21764 * 16 15 14 32 32 H 1.08992 * 108.79770 * 76.77149 * 17 16 15 33 33 H 1.08996 * 108.79480 * 195.12166 * 17 16 15 34 34 H 1.08999 * 109.32760 * 306.68183 * 21 12 2 35 35 H 1.08999 * 109.33086 * 66.15214 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6033 8 14 2.3213 -1.1205 4.0079 9 1 3.1454 -2.2878 3.6037 10 1 3.1465 -0.1876 4.8165 11 1 1.1660 -1.5867 4.8159 12 6 2.0399 -0.7213 -1.2493 13 1 1.6658 -1.7449 -1.2293 14 6 3.5718 -0.7660 -1.1894 15 6 4.0087 -2.0420 -1.8797 16 6 4.5102 -1.7204 -3.2875 17 6 3.6746 -0.6989 -4.0763 18 16 1.9040 -0.9872 -3.9387 19 8 1.2570 -0.3661 -5.0409 20 8 1.6879 -2.3707 -3.6968 21 6 1.4903 -0.0565 -2.4172 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1616 3.4844 26 1 3.9890 0.0978 -1.7069 27 1 3.9027 -0.7736 -0.1508 28 1 4.8103 -2.5080 -1.3068 29 1 3.1636 -2.7275 -1.9435 30 1 5.5284 -1.3395 -3.2082 31 1 4.5421 -2.6484 -3.8584 32 1 3.8978 0.3005 -3.7030 33 1 3.9567 -0.7516 -5.1278 34 1 0.4064 0.0056 -2.3204 35 1 1.9019 0.9505 -2.4863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:46 Heat of formation + Delta-G solvation = -106.943743 kcal Electronic energy + Delta-G solvation = -17222.553533 eV Core-core repulsion = 14539.554341 eV Total energy + Delta-G solvation = -2682.999192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66251 -37.84816 -36.96972 -36.04089 -34.17166 -30.92471 -30.26679 -27.53942 -25.95318 -23.99898 -21.37009 -20.90005 -19.54668 -18.53060 -17.62221 -17.38163 -16.55289 -16.43343 -15.91382 -15.38344 -14.94071 -14.67868 -14.40446 -13.87188 -13.63762 -13.22535 -13.09320 -13.00482 -12.90368 -12.78337 -12.64090 -12.41956 -12.26086 -12.12263 -12.01470 -11.57831 -11.33911 -11.25383 -10.96418 -10.64780 -10.47701 -10.32735 -8.03584 -6.13897 -0.80884 1.41206 1.45314 1.54512 1.87789 2.46947 2.80614 3.11008 3.25355 3.72152 3.83754 3.93925 4.07260 4.23150 4.28126 4.48518 4.69144 4.72995 4.92126 4.95427 4.97378 5.03598 5.22795 5.27362 5.33569 5.41431 5.48233 5.63995 5.71994 5.76680 6.03819 6.18975 6.45403 6.97897 7.53280 9.01401 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035514 B = 0.007437 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.235135 B = 3763.874938 C = 4233.025997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 H 0.009 0.991 4 C -0.514 4.514 5 H 0.062 0.938 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.944 3.056 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.289 1.289 12 C -0.076 4.076 13 H 0.060 0.940 14 C -0.125 4.125 15 C -0.150 4.150 16 C -0.092 4.092 17 C -0.599 4.599 18 S 2.412 3.588 19 O -0.989 6.989 20 O -0.974 6.974 21 C -0.575 4.575 22 H 0.036 0.964 23 H 0.021 0.979 24 H 0.053 0.947 25 H 0.257 0.743 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 -1.655 -11.408 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.027 0.973 4 C -0.552 4.552 5 H 0.080 0.920 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.771 3.229 9 H -0.188 1.188 10 H -0.209 1.209 11 H -0.216 1.216 12 C -0.096 4.096 13 H 0.078 0.922 14 C -0.163 4.163 15 C -0.188 4.188 16 C -0.131 4.131 17 C -0.731 4.731 18 S 2.601 3.399 19 O -0.986 6.986 20 O -0.971 6.971 21 C -0.704 4.704 22 H 0.055 0.945 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.175 0.825 34 H 0.146 0.854 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.238 -2.067 -11.895 14.076 hybrid contribution 0.139 0.231 1.707 1.728 sum 7.376 -1.836 -10.189 12.712 Atomic orbital electron populations 1.21896 0.99611 0.98672 0.99974 1.18747 0.91964 0.94764 0.91513 0.97322 1.21649 1.30100 1.12059 0.91421 0.91974 1.25691 0.95686 0.95793 1.01756 1.70028 1.38266 1.24430 1.23436 0.85707 0.77990 0.78941 0.80233 1.18837 1.20943 1.21569 1.19622 0.96849 0.99349 0.93774 0.92182 1.21752 0.93180 0.98308 1.03011 1.21881 1.02867 0.98271 0.95782 1.21154 1.00018 0.97663 0.94225 1.30141 1.20179 1.11503 1.11285 1.07965 0.79715 0.75616 0.76642 1.93507 1.74943 1.78799 1.51366 1.93488 1.85694 1.32116 1.85799 1.28961 1.11597 1.14241 1.15592 0.94475 0.95963 0.92771 0.93418 0.89466 0.90518 0.89723 0.91397 0.88259 0.90683 0.82248 0.82475 0.85374 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 8.49 71.98 0.61 -6.13 16 2 C 0.05 2.31 1.85 -11.54 -0.02 2.29 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.51 -26.41 7.33 25.60 0.19 -26.22 16 5 H 0.06 3.11 6.88 -2.91 -0.02 3.09 16 6 C 0.01 0.45 5.30 84.65 0.45 0.90 16 7 N -0.92 -52.07 11.32 21.45 0.24 -51.82 16 8 Si 0.94 42.61 29.54 68.60 2.03 44.63 16 9 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 C -0.08 -2.73 1.12 -13.04 -0.01 -2.75 16 13 H 0.06 2.34 6.58 -2.39 -0.02 2.32 16 14 C -0.13 -3.78 4.85 30.23 0.15 -3.63 16 15 C -0.15 -3.86 5.46 30.06 0.16 -3.70 16 16 C -0.09 -1.73 5.29 30.80 0.16 -1.56 16 17 C -0.60 -10.34 5.55 72.23 0.40 -9.94 16 18 S 2.41 64.57 5.15 -56.49 -0.29 64.27 16 19 O -0.99 -31.90 18.10 -127.37 -2.31 -34.21 16 20 O -0.97 -32.97 15.38 -127.37 -1.96 -34.93 16 21 C -0.57 -16.80 4.87 69.61 0.34 -16.47 16 22 H 0.04 1.49 6.16 -2.39 -0.01 1.47 16 23 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 2.86 6.07 -2.38 -0.01 2.85 16 25 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 26 H 0.09 2.05 6.34 -2.39 -0.02 2.03 16 27 H 0.08 2.74 6.02 -2.39 -0.01 2.72 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.04 5.54 -2.39 -0.01 2.03 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.16 1.94 7.08 -2.54 -0.02 1.92 16 33 H 0.16 1.93 8.14 -2.55 -0.02 1.91 16 34 H 0.13 3.95 5.71 -2.39 -0.01 3.94 16 35 H 0.15 3.49 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -68.56 272.60 1.21 -67.35 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.07 Total: 11.90 kcal Atomic # 6 Polarization: -69.63 SS G_CDS: 2.43 Total: -67.21 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.24 Total: -51.82 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -4.26 Total: -69.13 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 64.57 SS G_CDS: -0.29 Total: 64.27 kcal Total: -68.56 1.21 -67.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.592 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds