Wall clock time and date at job start Mon Mar 30 2020 04:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48497 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47082 * 299.99816 * 3 2 1 6 6 H 1.48500 * 109.47330 * 59.99515 * 3 2 1 7 7 C 1.39881 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99967 * 196.85887 * 7 2 1 9 9 C 1.41140 * 119.99936 * 16.85123 * 7 2 1 10 10 C 1.40887 * 120.15736 * 205.38614 * 9 7 2 11 11 C 1.36345 * 119.82921 * 180.02562 * 10 9 7 12 12 C 1.39529 * 120.16574 * 359.97438 * 11 10 9 13 13 N 1.39075 * 119.83768 * 180.02562 * 12 11 10 14 14 C 1.37194 * 120.00041 * 145.44877 * 13 12 11 15 15 N 1.28116 * 118.43352 * 354.85572 * 14 13 12 16 16 C 1.46006 * 123.33432 * 180.48729 * 15 14 13 17 17 C 1.53060 * 109.96607 * 342.70171 * 16 15 14 18 18 O 1.43346 * 108.40364 * 48.17876 * 17 16 15 19 19 C 1.43003 * 112.71456 * 293.13702 * 18 17 16 20 20 C 1.39527 * 120.32339 * 0.27727 * 12 11 10 21 21 C 1.36352 * 120.16605 * 359.43986 * 20 12 11 22 22 H 0.97000 * 120.00019 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.08363 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.92021 * 179.97438 * 11 10 9 25 25 H 0.97006 * 120.00225 * 325.44590 * 13 12 11 26 26 H 1.08996 * 109.38858 * 102.85729 * 16 15 14 27 27 H 1.08998 * 109.38384 * 222.64705 * 16 15 14 28 28 H 1.08998 * 109.67433 * 167.90992 * 17 16 15 29 29 H 1.09004 * 109.67543 * 288.45311 * 17 16 15 30 30 H 1.08998 * 109.40365 * 168.63293 * 19 18 17 31 31 H 1.09004 * 109.39327 * 288.45432 * 19 18 17 32 32 H 1.08001 * 119.91905 * 179.72723 * 20 12 11 33 33 H 1.08004 * 120.08259 * 180.25182 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0534 -1.2314 0.2718 9 6 1.3480 -2.4076 -0.3533 10 6 1.8184 -3.6450 0.1289 11 6 1.1758 -4.7965 -0.2175 12 6 0.0546 -4.7515 -1.0469 13 7 -0.5960 -5.9302 -1.3955 14 6 -1.9584 -5.9399 -1.5566 15 7 -2.6128 -4.8733 -1.2817 16 6 -4.0639 -4.7683 -1.4044 17 6 -4.5978 -5.9032 -2.2817 18 8 -4.0232 -7.1352 -1.8271 19 6 -2.6117 -7.2007 -2.0474 20 6 -0.4138 -3.5302 -1.5325 21 6 0.2152 -2.3699 -1.1898 22 1 -0.4850 0.8400 -0.0004 23 1 2.6858 -3.6813 0.7713 24 1 1.5353 -5.7459 0.1510 25 1 -0.0865 -6.7455 -1.5248 26 1 -4.5163 -4.8324 -0.4148 27 1 -4.3202 -3.8109 -1.8580 28 1 -5.6835 -5.9517 -2.1985 29 1 -4.3162 -5.7279 -3.3201 30 1 -2.2005 -8.0548 -1.5094 31 1 -2.4168 -7.3165 -3.1136 32 1 -1.2795 -3.5033 -2.1776 33 1 -0.1510 -1.4250 -1.5632 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260333760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:28 Heat of formation + Delta-G solvation = 10.471312 kcal Electronic energy + Delta-G solvation = -17227.643418 eV Core-core repulsion = 14446.584525 eV Total energy + Delta-G solvation = -2781.058893 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71713 -37.90778 -35.78272 -33.64872 -32.88831 -30.34473 -29.41067 -28.36672 -26.40731 -24.64699 -23.32894 -20.97850 -20.64184 -18.49812 -17.30806 -17.18233 -16.33618 -15.82496 -15.67645 -15.04311 -14.15826 -13.98663 -13.71356 -13.42909 -12.94763 -12.56882 -12.24972 -12.06502 -11.75608 -11.59180 -11.48344 -11.09088 -10.88716 -10.58371 -10.41248 -10.26197 -9.70975 -9.38519 -9.12848 -8.24118 -8.02116 -7.36706 -6.74635 -6.58171 -4.17223 2.59370 2.97325 3.12371 3.17853 3.20814 3.36615 3.69179 3.85443 4.00528 4.62499 4.75045 4.99523 5.07225 5.22813 5.29664 5.44658 5.75827 5.81097 6.00671 6.12150 6.26995 6.51766 6.80986 7.08352 7.10167 7.21680 7.31053 7.51067 7.68890 7.77580 8.15785 8.25190 8.27251 8.43167 8.74981 8.94711 8.99737 9.12123 10.29331 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038067 B = 0.005458 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.363112 B = 5128.864891 C = 5742.045719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.215 4.215 11 C -0.114 4.114 12 C 0.020 3.980 13 N -0.643 5.643 14 C 0.359 3.641 15 N -0.590 5.590 16 C 0.043 3.957 17 C 0.020 3.980 18 O -0.373 6.373 19 C 0.059 3.941 20 C -0.077 4.077 21 C -0.155 4.155 22 H 0.278 0.722 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.398 0.602 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 -8.895 -4.852 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.235 4.235 11 C -0.135 4.135 12 C -0.073 4.073 13 N -0.273 5.273 14 C 0.079 3.921 15 N -0.316 5.316 16 C -0.087 4.087 17 C -0.058 4.058 18 O -0.290 6.290 19 C -0.022 4.022 20 C -0.097 4.097 21 C -0.175 4.175 22 H 0.089 0.911 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.232 0.768 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.327 -7.917 -4.447 10.528 hybrid contribution 0.167 -0.011 -0.276 0.323 sum -5.160 -7.928 -4.724 10.573 Atomic orbital electron populations 1.69886 1.07444 1.28829 1.35733 1.25887 0.94700 1.01146 0.92531 0.86318 0.80964 0.81287 0.78441 1.18499 1.19829 1.20127 1.19526 0.97679 0.91251 1.40798 0.90611 1.17640 0.91398 0.91971 0.89080 1.20511 1.03748 0.92620 1.06612 1.20043 0.97597 0.97026 0.98829 1.17110 0.98401 0.85168 1.06579 1.41282 1.02401 1.11127 1.72494 1.21346 0.86830 0.91234 0.92658 1.70738 1.07752 1.24824 1.28284 1.22327 0.88451 0.98063 0.99894 1.23286 0.99113 0.85711 0.97701 1.88227 1.19459 1.37329 1.84020 1.21991 0.82284 0.96885 1.01080 1.20369 0.98578 0.91429 0.99349 1.20963 0.98967 0.96660 1.00940 0.91109 0.88958 0.89555 0.76755 0.90820 0.89660 0.88169 0.92649 0.87163 0.90871 0.87908 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.21 10.95 55.54 0.61 -20.60 16 2 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 3 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.46 -12.52 9.04 -37.87 -0.34 -12.87 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.10 2.77 5.57 -106.80 -0.59 2.18 16 10 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16 11 C -0.11 -2.56 9.90 -39.78 -0.39 -2.95 16 12 C 0.02 0.45 6.24 -83.61 -0.52 -0.07 16 13 N -0.64 -11.28 5.38 -8.11 -0.04 -11.33 16 14 C 0.36 6.12 7.36 -155.57 -1.14 4.98 16 15 N -0.59 -11.49 7.21 -58.64 -0.42 -11.92 16 16 C 0.04 0.68 7.43 -4.28 -0.03 0.65 16 17 C 0.02 0.25 6.93 37.19 0.26 0.51 16 18 O -0.37 -5.23 10.89 -35.23 -0.38 -5.62 16 19 C 0.06 0.75 6.90 35.79 0.25 1.00 16 20 C -0.08 -1.88 8.45 -39.78 -0.34 -2.22 16 21 C -0.16 -4.17 8.63 -39.26 -0.34 -4.51 16 22 H 0.28 6.76 8.30 -40.82 -0.34 6.43 16 23 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 24 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 25 H 0.40 5.45 8.79 -40.82 -0.36 5.09 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 2.48 6.35 -52.49 -0.33 2.14 16 33 H 0.12 3.26 6.18 -52.48 -0.32 2.94 16 LS Contribution 279.12 15.07 4.21 4.21 Total: -1.00 -30.74 279.12 -8.68 -39.42 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -3.95 Total: 9.01 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -3.67 Total: -17.20 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.14 Total: -43.84 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.38 Total: -5.62 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.74 -8.68 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.894 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds