Wall clock time and date at job start Mon Mar 30 2020 04:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48497 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47082 * 299.99816 * 3 2 1 6 6 H 1.48500 * 109.47330 * 59.99515 * 3 2 1 7 7 C 1.39881 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99967 * 196.85887 * 7 2 1 9 9 C 1.41140 * 119.99936 * 16.85123 * 7 2 1 10 10 C 1.40887 * 120.15736 * 205.38614 * 9 7 2 11 11 C 1.36345 * 119.82921 * 180.02562 * 10 9 7 12 12 C 1.39529 * 120.16574 * 359.97438 * 11 10 9 13 13 N 1.39075 * 119.83768 * 180.02562 * 12 11 10 14 14 C 1.37194 * 120.00041 * 145.44877 * 13 12 11 15 15 N 1.28116 * 118.43352 * 354.85572 * 14 13 12 16 16 C 1.46006 * 123.33432 * 180.48729 * 15 14 13 17 17 C 1.53060 * 109.96607 * 342.70171 * 16 15 14 18 18 O 1.43346 * 108.40364 * 48.17876 * 17 16 15 19 19 C 1.43003 * 112.71456 * 293.13702 * 18 17 16 20 20 C 1.39527 * 120.32339 * 0.27727 * 12 11 10 21 21 C 1.36352 * 120.16605 * 359.43986 * 20 12 11 22 22 H 0.97000 * 120.00019 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.08363 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.92021 * 179.97438 * 11 10 9 25 25 H 0.97006 * 120.00225 * 325.44590 * 13 12 11 26 26 H 1.08996 * 109.38858 * 102.85729 * 16 15 14 27 27 H 1.08998 * 109.38384 * 222.64705 * 16 15 14 28 28 H 1.08998 * 109.67433 * 167.90992 * 17 16 15 29 29 H 1.09004 * 109.67543 * 288.45311 * 17 16 15 30 30 H 1.08998 * 109.40365 * 168.63293 * 19 18 17 31 31 H 1.09004 * 109.39327 * 288.45432 * 19 18 17 32 32 H 1.08001 * 119.91905 * 179.72723 * 20 12 11 33 33 H 1.08004 * 120.08259 * 180.25182 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0534 -1.2314 0.2718 9 6 1.3480 -2.4076 -0.3533 10 6 1.8184 -3.6450 0.1289 11 6 1.1758 -4.7965 -0.2175 12 6 0.0546 -4.7515 -1.0469 13 7 -0.5960 -5.9302 -1.3955 14 6 -1.9584 -5.9399 -1.5566 15 7 -2.6128 -4.8733 -1.2817 16 6 -4.0639 -4.7683 -1.4044 17 6 -4.5978 -5.9032 -2.2817 18 8 -4.0232 -7.1352 -1.8271 19 6 -2.6117 -7.2007 -2.0474 20 6 -0.4138 -3.5302 -1.5325 21 6 0.2152 -2.3699 -1.1898 22 1 -0.4850 0.8400 -0.0004 23 1 2.6858 -3.6813 0.7713 24 1 1.5353 -5.7459 0.1510 25 1 -0.0865 -6.7455 -1.5248 26 1 -4.5163 -4.8324 -0.4148 27 1 -4.3202 -3.8109 -1.8580 28 1 -5.6835 -5.9517 -2.1985 29 1 -4.3162 -5.7279 -3.3201 30 1 -2.2005 -8.0548 -1.5094 31 1 -2.4168 -7.3165 -3.1136 32 1 -1.2795 -3.5033 -2.1776 33 1 -0.1510 -1.4250 -1.5632 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333760.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:28 Heat of formation + Delta-G solvation = -9.437155 kcal Electronic energy + Delta-G solvation = -17228.506714 eV Core-core repulsion = 14446.584525 eV Total energy + Delta-G solvation = -2781.922189 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97381 -39.55177 -37.33689 -35.31735 -34.38330 -31.79641 -31.32482 -30.02199 -27.65867 -26.33833 -24.61655 -22.85835 -22.40298 -19.88150 -19.17475 -18.62403 -17.54011 -17.20910 -16.83985 -16.76670 -15.75891 -15.31190 -15.22507 -15.02217 -14.52598 -14.09120 -13.84376 -13.64929 -13.43480 -13.11672 -12.84489 -12.74951 -12.60324 -12.25373 -12.02781 -11.55957 -11.41768 -11.22246 -10.97528 -9.77034 -9.53429 -9.22876 -8.61519 -8.37983 -6.16705 0.92028 1.24607 1.38799 1.43235 1.54701 1.76249 2.23965 2.43347 2.76269 2.84914 3.49429 3.84110 3.86569 4.09255 4.28941 4.34292 4.43879 4.52435 4.60441 4.63771 4.80405 4.90545 5.15111 5.20138 5.33947 5.45154 5.70352 5.79313 5.83521 5.99779 6.19088 6.36747 6.56724 6.74013 6.81911 7.01560 7.14817 7.67434 8.40957 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.038067 B = 0.005458 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.363112 B = 5128.864891 C = 5742.045719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.075 0.925 9 C 0.066 3.934 10 C -0.226 4.226 11 C -0.115 4.115 12 C 0.040 3.960 13 N -0.639 5.639 14 C 0.358 3.642 15 N -0.647 5.647 16 C 0.039 3.961 17 C 0.028 3.972 18 O -0.383 6.383 19 C 0.065 3.935 20 C -0.085 4.085 21 C -0.178 4.178 22 H 0.284 0.716 23 H 0.102 0.898 24 H 0.126 0.874 25 H 0.420 0.580 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.065 0.935 30 H 0.141 0.859 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 -10.800 -5.346 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.183 4.183 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.063 3.937 10 C -0.246 4.246 11 C -0.136 4.136 12 C -0.054 4.054 13 N -0.271 5.271 14 C 0.079 3.921 15 N -0.374 5.374 16 C -0.091 4.091 17 C -0.050 4.050 18 O -0.300 6.300 19 C -0.016 4.016 20 C -0.106 4.106 21 C -0.198 4.198 22 H 0.094 0.906 23 H 0.120 0.880 24 H 0.144 0.856 25 H 0.258 0.742 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.509 -9.873 -4.952 12.343 hybrid contribution 0.114 0.415 -0.140 0.452 sum -5.396 -9.458 -5.092 12.021 Atomic orbital electron populations 1.69963 1.09061 1.30047 1.36888 1.26767 0.95438 1.04566 0.91492 0.85168 0.79481 0.76318 0.78742 1.17949 1.19090 1.19269 1.19774 0.97912 0.92494 1.42882 0.90675 1.17973 0.92208 0.93316 0.90159 1.20756 1.04292 0.92783 1.06749 1.20383 0.97148 0.97919 0.98106 1.17172 0.97675 0.86153 1.04415 1.41218 1.03045 1.10372 1.72495 1.21907 0.86311 0.92601 0.91298 1.70568 1.10229 1.27173 1.29430 1.22357 0.86778 0.99581 1.00396 1.23310 1.00513 0.83965 0.97189 1.88223 1.20014 1.37512 1.84287 1.22174 0.81354 0.95160 1.02909 1.20434 0.98519 0.91971 0.99703 1.20869 0.99990 0.96674 1.02278 0.90571 0.88034 0.85601 0.74165 0.91475 0.89886 0.85417 0.91700 0.84175 0.88135 0.87984 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.46 10.95 21.82 0.24 -46.22 16 2 C 0.03 1.63 5.15 85.23 0.44 2.07 16 3 Si 0.98 39.99 29.59 68.60 2.03 42.02 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.50 -28.15 9.04 23.38 0.21 -27.94 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.07 3.72 5.57 -21.27 -0.12 3.61 16 10 C -0.23 -11.27 9.74 22.48 0.22 -11.05 16 11 C -0.11 -4.97 9.90 22.14 0.22 -4.75 16 12 C 0.04 1.75 6.24 38.62 0.24 1.99 16 13 N -0.64 -20.71 5.38 -179.56 -0.97 -21.67 16 14 C 0.36 11.34 7.36 137.96 1.01 12.36 16 15 N -0.65 -24.73 7.21 -339.40 -2.45 -27.18 16 16 C 0.04 1.19 7.43 86.49 0.64 1.83 16 17 C 0.03 0.62 6.93 72.00 0.50 1.12 16 18 O -0.38 -9.40 10.89 -148.98 -1.62 -11.02 16 19 C 0.06 1.39 6.90 71.09 0.49 1.88 16 20 C -0.09 -4.27 8.45 22.14 0.19 -4.09 16 21 C -0.18 -10.00 8.63 22.48 0.19 -9.80 16 22 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 23 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 24 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 25 H 0.42 9.87 8.79 -92.70 -0.82 9.05 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.10 5.04 6.35 -2.91 -0.02 5.02 16 33 H 0.09 5.56 6.18 -2.91 -0.02 5.55 16 Total: -1.00 -69.31 279.12 1.78 -67.52 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.31 Total: 29.31 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.24 Total: -32.77 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -3.18 Total: -95.07 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.62 Total: -11.02 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -69.31 1.78 -67.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333760.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.085 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds