Wall clock time and date at job start Mon Mar 30 2020 04:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48491 * 109.47242 * 240.00330 * 3 2 1 5 5 H 1.48502 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47125 * 120.00000 * 3 2 1 7 7 C 1.38819 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99776 * 194.54669 * 7 2 1 9 9 N 1.36904 * 120.00148 * 14.26889 * 7 2 1 10 10 C 1.38842 * 119.99994 * 50.65505 * 9 7 2 11 11 C 1.39224 * 119.63898 * 4.73436 * 10 9 7 12 12 C 1.38434 * 119.01612 * 179.74259 * 11 10 9 13 13 C 1.38446 * 118.38567 * 0.49035 * 12 11 10 14 14 C 1.38517 * 119.68110 * 359.77818 * 13 12 11 15 15 N 1.31780 * 120.56614 * 359.96668 * 14 13 12 16 16 C 1.51239 * 107.08654 * 179.97438 * 14 13 12 17 17 O 1.43918 * 106.00951 * 17.73521 * 16 14 13 18 18 C 1.43956 * 104.92810 * 331.51618 * 17 16 14 19 19 C 1.46501 * 120.00099 * 230.65986 * 9 7 2 20 20 C 1.52996 * 117.49897 * 3.42741 * 19 9 7 21 21 C 1.52999 * 60.00164 * 252.51050 * 20 19 9 22 22 H 0.96998 * 119.99622 * 4.94236 * 1 2 3 23 23 H 1.08003 * 120.49285 * 359.96455 * 11 10 9 24 24 H 1.07998 * 120.80215 * 180.25958 * 12 11 10 25 25 H 1.09000 * 110.14520 * 136.87313 * 16 14 13 26 26 H 1.09003 * 110.14321 * 258.59868 * 16 14 13 27 27 H 1.08998 * 110.16370 * 147.54169 * 18 17 16 28 28 H 1.09001 * 110.16132 * 269.24755 * 18 17 16 29 29 H 1.08997 * 115.55006 * 149.13283 * 19 9 7 30 30 H 1.09004 * 117.49935 * 359.97438 * 20 19 9 31 31 H 1.09005 * 117.50249 * 145.01746 * 20 19 9 32 32 H 1.09004 * 117.49875 * 252.51349 * 21 20 19 33 33 H 1.08995 * 117.50022 * 107.48590 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0637 -1.2173 0.2344 9 7 1.3569 -2.3694 -0.2933 10 6 0.5743 -2.4592 -1.4366 11 6 0.5372 -1.3930 -2.3311 12 6 -0.2431 -1.4984 -3.4696 13 6 -0.9660 -2.6626 -3.6666 14 6 -0.8889 -3.6839 -2.7340 15 7 -0.1333 -3.5568 -1.6619 16 6 -1.7793 -4.8031 -3.2260 17 8 -2.0027 -4.5469 -4.6245 18 6 -1.9021 -3.1173 -4.7604 19 6 1.4839 -3.5237 0.5999 20 6 2.2944 -3.3374 1.8841 21 6 2.8663 -4.1660 0.7320 22 1 -0.4849 0.8369 -0.0724 23 1 1.1116 -0.4982 -2.1413 24 1 -0.2898 -0.6906 -4.1849 25 1 -1.2815 -5.7639 -3.0952 26 1 -2.7265 -4.7939 -2.6867 27 1 -1.4918 -2.8607 -5.7370 28 1 -2.8823 -2.6579 -4.6326 29 1 0.6166 -4.1825 0.6429 30 1 2.7335 -2.3561 2.0642 31 1 1.9604 -3.8736 2.7724 32 1 2.9084 -5.2474 0.8623 33 1 3.6811 -3.7297 0.1544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260345773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:07 Heat of formation + Delta-G solvation = 45.407126 kcal Electronic energy + Delta-G solvation = -17837.338331 eV Core-core repulsion = 15057.794369 eV Total energy + Delta-G solvation = -2779.543962 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06736 -38.12714 -36.46971 -33.93068 -31.96874 -31.10698 -29.27415 -27.66811 -25.17554 -23.89110 -21.61461 -21.30499 -21.01866 -20.06849 -17.66081 -16.37555 -15.80878 -15.66010 -15.50333 -14.94510 -14.17447 -13.91737 -13.38667 -13.16327 -13.06418 -12.39254 -12.21957 -12.05911 -11.75685 -11.42014 -11.26391 -11.21822 -10.88226 -10.72565 -10.48172 -10.12652 -9.65521 -9.54719 -8.92483 -8.66512 -8.32756 -8.21246 -6.72217 -6.07153 -4.24203 2.31791 2.47626 3.08839 3.14809 3.15542 3.94292 4.35806 4.41623 4.64384 4.74099 4.90453 5.11430 5.31986 5.72008 5.73760 5.80207 5.84845 5.86670 5.93139 5.94805 6.07424 6.27685 6.38906 6.48031 6.59620 6.76953 6.84281 6.91574 6.95313 7.18123 7.30039 7.36344 7.69617 8.03332 8.69614 8.87006 9.17081 9.77855 10.56634 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.008917 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.519730 B = 3139.162629 C = 4142.382798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.046 3.954 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.326 4.326 8 H 0.084 0.916 9 N -0.408 5.408 10 C 0.428 3.572 11 C -0.183 4.183 12 C -0.030 4.030 13 C -0.301 4.301 14 C 0.127 3.873 15 N -0.549 5.549 16 C 0.109 3.891 17 O -0.370 6.370 18 C 0.115 3.885 19 C 0.101 3.899 20 C -0.179 4.179 21 C -0.207 4.207 22 H 0.272 0.728 23 H 0.134 0.866 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -3.150 -3.204 4.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.163 4.163 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.455 4.455 8 H 0.102 0.898 9 N -0.101 5.101 10 C 0.191 3.809 11 C -0.209 4.209 12 C -0.055 4.055 13 C -0.309 4.309 14 C -0.016 4.016 15 N -0.268 5.268 16 C 0.032 3.968 17 O -0.288 6.288 18 C 0.038 3.962 19 C -0.005 4.005 20 C -0.217 4.217 21 C -0.247 4.247 22 H 0.082 0.918 23 H 0.152 0.848 24 H 0.130 0.870 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.204 -3.778 -2.443 4.504 hybrid contribution 0.276 1.860 -0.272 1.900 sum 0.072 -1.918 -2.715 3.325 Atomic orbital electron populations 1.70063 1.06041 1.28439 1.42790 1.25601 0.95245 0.99974 0.95479 0.86276 0.79481 0.81345 0.79383 1.19478 1.20665 1.19541 1.19027 0.93108 0.82983 1.50355 0.89811 1.41384 1.43963 1.09539 1.15233 1.18200 0.89258 0.87716 0.85751 1.21257 1.04474 1.00837 0.94356 1.20274 0.94079 0.94933 0.96233 1.20991 1.08747 0.98910 1.02212 1.21400 0.94207 0.95282 0.90743 1.66018 1.12198 1.26380 1.22252 1.21408 0.96983 0.96584 0.81844 1.89000 1.92924 1.22600 1.24312 1.21261 0.96907 0.80606 0.97430 1.21534 0.93400 0.92029 0.93538 1.23109 1.04934 1.01801 0.91842 1.23287 0.99794 0.97962 1.03607 0.91804 0.84812 0.86978 0.88704 0.90707 0.90171 0.92309 0.87113 0.87754 0.89808 0.89806 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.32 11.78 55.49 0.65 -21.67 16 2 C 0.05 1.14 3.30 -17.45 -0.06 1.09 16 3 Si 0.91 19.09 29.57 -169.99 -5.03 14.06 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.33 -8.16 7.27 -15.07 -0.11 -8.27 16 8 H 0.08 2.04 7.53 -52.49 -0.40 1.64 16 9 N -0.41 -10.16 2.87 -107.96 -0.31 -10.47 16 10 C 0.43 10.78 6.73 -155.04 -1.04 9.74 16 11 C -0.18 -4.40 7.87 -39.14 -0.31 -4.70 16 12 C -0.03 -0.63 10.16 -39.43 -0.40 -1.03 16 13 C -0.30 -6.14 6.34 -104.31 -0.66 -6.80 16 14 C 0.13 2.71 7.50 -82.25 -0.62 2.10 16 15 N -0.55 -13.16 9.27 -8.41 -0.08 -13.24 16 16 C 0.11 1.89 7.63 36.27 0.28 2.17 16 17 O -0.37 -6.46 11.72 -35.23 -0.41 -6.87 16 18 C 0.11 1.92 7.63 36.14 0.28 2.19 16 19 C 0.10 2.21 6.17 -67.93 -0.42 1.79 16 20 C -0.18 -3.40 9.82 -26.73 -0.26 -3.67 16 21 C -0.21 -3.85 10.35 -26.73 -0.28 -4.12 16 22 H 0.27 6.88 8.32 -40.82 -0.34 6.54 16 23 H 0.13 3.31 5.60 -52.48 -0.29 3.02 16 24 H 0.11 2.00 8.06 -52.49 -0.42 1.58 16 25 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 2.45 7.68 -51.93 -0.40 2.05 16 30 H 0.10 2.11 6.87 -51.93 -0.36 1.75 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 LS Contribution 278.37 15.07 4.19 4.19 Total: -1.00 -28.08 278.37 -8.55 -36.63 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.96 Total: 6.89 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.60 Total: -9.53 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.27 Total: -45.37 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.41 Total: -6.87 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.08 -8.55 -36.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.033 kcal (2) G-P(sol) polarization free energy of solvation -28.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds