Wall clock time and date at job start Mon Mar 30 2020 04:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48491 * 109.47242 * 240.00330 * 3 2 1 5 5 H 1.48502 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47125 * 120.00000 * 3 2 1 7 7 C 1.38819 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99776 * 194.54669 * 7 2 1 9 9 N 1.36904 * 120.00148 * 14.26889 * 7 2 1 10 10 C 1.38842 * 119.99994 * 50.65505 * 9 7 2 11 11 C 1.39224 * 119.63898 * 4.73436 * 10 9 7 12 12 C 1.38434 * 119.01612 * 179.74259 * 11 10 9 13 13 C 1.38446 * 118.38567 * 0.49035 * 12 11 10 14 14 C 1.38517 * 119.68110 * 359.77818 * 13 12 11 15 15 N 1.31780 * 120.56614 * 359.96668 * 14 13 12 16 16 C 1.51239 * 107.08654 * 179.97438 * 14 13 12 17 17 O 1.43918 * 106.00951 * 17.73521 * 16 14 13 18 18 C 1.43956 * 104.92810 * 331.51618 * 17 16 14 19 19 C 1.46501 * 120.00099 * 230.65986 * 9 7 2 20 20 C 1.52996 * 117.49897 * 3.42741 * 19 9 7 21 21 C 1.52999 * 60.00164 * 252.51050 * 20 19 9 22 22 H 0.96998 * 119.99622 * 4.94236 * 1 2 3 23 23 H 1.08003 * 120.49285 * 359.96455 * 11 10 9 24 24 H 1.07998 * 120.80215 * 180.25958 * 12 11 10 25 25 H 1.09000 * 110.14520 * 136.87313 * 16 14 13 26 26 H 1.09003 * 110.14321 * 258.59868 * 16 14 13 27 27 H 1.08998 * 110.16370 * 147.54169 * 18 17 16 28 28 H 1.09001 * 110.16132 * 269.24755 * 18 17 16 29 29 H 1.08997 * 115.55006 * 149.13283 * 19 9 7 30 30 H 1.09004 * 117.49935 * 359.97438 * 20 19 9 31 31 H 1.09005 * 117.50249 * 145.01746 * 20 19 9 32 32 H 1.09004 * 117.49875 * 252.51349 * 21 20 19 33 33 H 1.08995 * 117.50022 * 107.48590 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0637 -1.2173 0.2344 9 7 1.3569 -2.3694 -0.2933 10 6 0.5743 -2.4592 -1.4366 11 6 0.5372 -1.3930 -2.3311 12 6 -0.2431 -1.4984 -3.4696 13 6 -0.9660 -2.6626 -3.6666 14 6 -0.8889 -3.6839 -2.7340 15 7 -0.1333 -3.5568 -1.6619 16 6 -1.7793 -4.8031 -3.2260 17 8 -2.0027 -4.5469 -4.6245 18 6 -1.9021 -3.1173 -4.7604 19 6 1.4839 -3.5237 0.5999 20 6 2.2944 -3.3374 1.8841 21 6 2.8663 -4.1660 0.7320 22 1 -0.4849 0.8369 -0.0724 23 1 1.1116 -0.4982 -2.1413 24 1 -0.2898 -0.6906 -4.1849 25 1 -1.2815 -5.7639 -3.0952 26 1 -2.7265 -4.7939 -2.6867 27 1 -1.4918 -2.8607 -5.7370 28 1 -2.8823 -2.6579 -4.6326 29 1 0.6166 -4.1825 0.6429 30 1 2.7335 -2.3561 2.0642 31 1 1.9604 -3.8736 2.7724 32 1 2.9084 -5.2474 0.8623 33 1 3.6811 -3.7297 0.1544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260345773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:06 Heat of formation + Delta-G solvation = 29.469633 kcal Electronic energy + Delta-G solvation = -17838.029433 eV Core-core repulsion = 15057.794369 eV Total energy + Delta-G solvation = -2780.235064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.64756 -39.72680 -38.04310 -35.65658 -33.66803 -32.85564 -30.90449 -29.11411 -26.99266 -25.48530 -23.13158 -22.86104 -22.69034 -21.76457 -19.41824 -18.01054 -17.36961 -17.18438 -17.05063 -16.67945 -15.72688 -15.59144 -14.99128 -14.76650 -14.65647 -14.03682 -13.79037 -13.52635 -13.39965 -13.10082 -12.92313 -12.86984 -12.42976 -12.29725 -12.15485 -11.81126 -11.17135 -11.03994 -10.71371 -10.37964 -9.98459 -9.91656 -8.57516 -7.85153 -6.14936 0.62670 0.77837 1.41155 1.43006 1.50567 2.21938 2.68858 2.93081 3.03619 3.05912 3.30583 3.41679 3.83718 4.11493 4.26047 4.28876 4.35029 4.47432 4.50339 4.62928 4.75001 4.76716 4.80831 4.90465 5.02370 5.08303 5.24385 5.34627 5.39134 5.41506 5.51146 5.77136 6.02111 6.16616 6.84530 7.12219 7.36762 7.97499 8.70565 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.008917 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.519730 B = 3139.162629 C = 4142.382798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.336 4.336 8 H 0.083 0.917 9 N -0.427 5.427 10 C 0.402 3.598 11 C -0.211 4.211 12 C -0.029 4.029 13 C -0.303 4.303 14 C 0.105 3.895 15 N -0.566 5.566 16 C 0.115 3.885 17 O -0.372 6.372 18 C 0.118 3.882 19 C 0.064 3.936 20 C -0.167 4.167 21 C -0.183 4.183 22 H 0.269 0.731 23 H 0.118 0.882 24 H 0.143 0.857 25 H 0.112 0.888 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -3.650 -4.080 5.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.464 4.464 8 H 0.100 0.900 9 N -0.121 5.121 10 C 0.166 3.834 11 C -0.238 4.238 12 C -0.054 4.054 13 C -0.310 4.310 14 C -0.038 4.038 15 N -0.287 5.287 16 C 0.038 3.962 17 O -0.290 6.290 18 C 0.042 3.958 19 C -0.041 4.041 20 C -0.204 4.204 21 C -0.222 4.222 22 H 0.078 0.922 23 H 0.136 0.864 24 H 0.161 0.839 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.369 -4.299 -3.324 5.447 hybrid contribution 0.284 1.921 -0.068 1.943 sum -0.085 -2.378 -3.392 4.143 Atomic orbital electron populations 1.70180 1.07571 1.28832 1.44617 1.26296 0.95710 1.02682 0.94765 0.85332 0.78230 0.77390 0.79611 1.18934 1.20797 1.18794 1.19208 0.93177 0.83770 1.50274 0.89963 1.41556 1.44474 1.10185 1.15870 1.18523 0.89976 0.88544 0.86406 1.21249 1.06186 1.00429 0.95948 1.20616 0.92911 0.96187 0.95727 1.21512 1.08342 0.98118 1.03064 1.22247 0.94023 0.97292 0.90249 1.66051 1.12872 1.26243 1.23535 1.21533 0.97064 0.95787 0.81800 1.89003 1.92911 1.22948 1.24119 1.21426 0.97028 0.80152 0.97188 1.21669 0.94754 0.92242 0.95454 1.23135 1.03538 1.01568 0.92172 1.23281 0.97167 0.99428 1.02317 0.92166 0.86420 0.83943 0.87058 0.88809 0.87578 0.90242 0.88134 0.89260 0.87044 0.86876 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.93 11.78 21.65 0.25 -47.68 16 2 C 0.01 0.55 3.30 84.87 0.28 0.83 16 3 Si 0.97 39.73 29.57 68.60 2.03 41.76 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.34 -17.25 7.27 84.04 0.61 -16.64 16 8 H 0.08 4.10 7.53 -2.91 -0.02 4.08 16 9 N -0.43 -21.82 2.87 -495.46 -1.42 -23.24 16 10 C 0.40 20.77 6.73 133.10 0.90 21.66 16 11 C -0.21 -10.40 7.87 22.55 0.18 -10.22 16 12 C -0.03 -1.22 10.16 22.37 0.23 -0.99 16 13 C -0.30 -11.87 6.34 -19.66 -0.12 -12.00 16 14 C 0.10 4.39 7.50 42.80 0.32 4.71 16 15 N -0.57 -27.49 9.27 -180.53 -1.67 -29.16 16 16 C 0.12 3.72 7.63 71.41 0.54 4.26 16 17 O -0.37 -11.75 11.72 -148.98 -1.75 -13.50 16 18 C 0.12 3.56 7.63 71.32 0.54 4.10 16 19 C 0.06 2.86 6.17 44.99 0.28 3.13 16 20 C -0.17 -6.24 9.82 30.59 0.30 -5.94 16 21 C -0.18 -6.63 10.35 30.59 0.32 -6.31 16 22 H 0.27 14.02 8.32 -92.71 -0.77 13.25 16 23 H 0.12 6.03 5.60 -2.91 -0.02 6.02 16 24 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 25 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 26 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 27 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.10 4.57 7.68 -2.39 -0.02 4.55 16 30 H 0.09 3.62 6.87 -2.38 -0.02 3.60 16 31 H 0.11 3.49 8.14 -2.38 -0.02 3.48 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -61.61 278.37 2.93 -58.68 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 1.12 Total: 26.54 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.37 Total: -13.40 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -2.84 Total: -100.08 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.75 Total: -13.50 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -61.61 2.93 -58.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260345773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.146 kcal (2) G-P(sol) polarization free energy of solvation -61.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds