Wall clock time and date at job start Mon Mar 30 2020 03:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09004 * 109.46921 * 305.73984 * 3 2 1 5 5 C 1.50695 * 109.47274 * 185.73978 * 3 2 1 6 6 H 1.08004 * 120.00508 * 245.60565 * 5 3 2 7 7 C 1.37882 * 120.00071 * 65.60118 * 5 3 2 8 8 N 1.31509 * 120.00309 * 196.92117 * 7 5 3 9 9 Si 1.86800 * 119.99747 * 16.92397 * 7 5 3 10 10 H 1.48503 * 109.47115 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47182 * 299.99788 * 9 7 5 12 12 H 1.48496 * 109.47514 * 59.99599 * 9 7 5 13 13 C 1.53004 * 109.47020 * 65.74241 * 3 2 1 14 14 H 1.08996 * 109.54360 * 305.18932 * 13 3 2 15 15 C 1.53027 * 109.55276 * 65.48330 * 13 3 2 16 16 C 1.52585 * 109.98803 * 183.50545 * 15 13 3 17 17 C 1.52584 * 110.64050 * 290.01244 * 16 15 13 18 18 C 1.53035 * 109.98715 * 69.98477 * 17 16 15 19 19 S 1.81662 * 109.00156 * 296.35178 * 18 17 16 20 20 O 1.42106 * 108.66410 * 299.97016 * 19 18 17 21 21 O 1.42098 * 108.75235 * 168.65534 * 19 18 17 22 22 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 23 23 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 24 24 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 26 26 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 27 27 H 0.97007 * 119.99921 * 354.54420 * 8 7 5 28 28 H 1.09003 * 109.38329 * 303.66320 * 15 13 3 29 29 H 1.09005 * 109.38545 * 63.34024 * 15 13 3 30 30 H 1.09003 * 109.24380 * 169.71274 * 16 15 13 31 31 H 1.08999 * 109.20997 * 50.28855 * 16 15 13 32 32 H 1.09000 * 109.38725 * 309.82964 * 17 16 15 33 33 H 1.09004 * 109.38929 * 190.14394 * 17 16 15 34 34 H 1.09010 * 109.55006 * 176.49350 * 18 17 16 35 35 H 1.09001 * 109.55114 * 56.20951 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5951 1.9852 -0.8342 5 6 3.5402 1.4450 -0.1421 6 1 4.1588 1.8035 0.6674 7 6 4.1232 0.9893 -1.3055 8 7 5.4002 0.6757 -1.3221 9 14 3.0991 0.8177 -2.8583 10 1 3.9546 0.3128 -3.9622 11 1 1.9884 -0.1377 -2.6157 12 1 2.5403 2.1418 -3.2318 13 6 1.6512 2.1209 1.3152 14 1 0.5745 2.0385 1.4636 15 6 2.3835 1.4447 2.4763 16 6 1.9373 2.0560 3.8012 17 6 2.4610 3.4825 3.9388 18 6 1.7379 4.4026 2.9525 19 16 2.1245 3.8740 1.2581 20 8 3.5297 3.9594 1.0645 21 8 1.2563 4.5503 0.3592 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.9500 0.8390 -0.5397 28 1 2.1567 0.3785 2.4752 29 1 3.4579 1.5844 2.3569 30 1 2.3211 1.4516 4.6231 31 1 0.8481 2.0677 3.8420 32 1 3.5306 3.4971 3.7294 33 1 2.2881 3.8350 4.9557 34 1 2.0723 5.4297 3.0995 35 1 0.6622 4.3407 3.1174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260351037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:44 Heat of formation + Delta-G solvation = -90.967422 kcal Electronic energy + Delta-G solvation = -17608.325663 eV Core-core repulsion = 14926.019257 eV Total energy + Delta-G solvation = -2682.306406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.71530 -36.21623 -35.31799 -35.02345 -32.01801 -30.70222 -28.20290 -26.10448 -23.46613 -22.30329 -20.79232 -19.28003 -18.14846 -17.36521 -16.26812 -15.90899 -15.01752 -14.64877 -14.37366 -13.88657 -13.43553 -13.30877 -13.11891 -12.62832 -12.37066 -12.07212 -11.65898 -11.50166 -11.28207 -11.23400 -11.04248 -10.85593 -10.71422 -10.58904 -10.47543 -10.28933 -10.08809 -9.70918 -9.40208 -9.27795 -8.59075 -8.08613 -6.37935 -3.99538 0.66680 3.41120 3.42581 3.51472 3.64467 4.29551 4.41719 4.54652 4.80253 4.91614 5.11151 5.16129 5.25563 5.34245 5.51180 5.62628 5.76553 5.88097 5.89525 5.93836 6.00546 6.07492 6.13560 6.30830 6.40827 6.59392 6.65513 6.78087 6.87910 7.14453 7.33842 8.01576 8.53588 9.03290 9.71165 11.03061 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.010748 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.028394 B = 2604.581862 C = 2810.393772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C 0.038 3.962 4 H 0.028 0.972 5 C -0.612 4.612 6 H 0.085 0.915 7 C 0.039 3.961 8 N -0.903 5.903 9 Si 1.029 2.971 10 H -0.285 1.285 11 H -0.271 1.271 12 H -0.281 1.281 13 C -0.525 4.525 14 H 0.111 0.889 15 C -0.098 4.098 16 C -0.141 4.141 17 C -0.106 4.106 18 C -0.625 4.625 19 S 2.415 3.585 20 O -0.909 6.909 21 O -0.960 6.960 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.270 0.730 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 2.212 10.099 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.018 3.982 4 H 0.046 0.954 5 C -0.650 4.650 6 H 0.103 0.897 7 C -0.167 4.167 8 N -0.536 5.536 9 Si 0.858 3.142 10 H -0.211 1.211 11 H -0.198 1.198 12 H -0.207 1.207 13 C -0.637 4.637 14 H 0.129 0.871 15 C -0.136 4.136 16 C -0.179 4.179 17 C -0.144 4.144 18 C -0.751 4.751 19 S 2.597 3.403 20 O -0.906 6.906 21 O -0.957 6.957 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.890 2.260 7.850 12.073 hybrid contribution -0.606 0.260 2.266 2.360 sum -9.496 2.520 10.116 14.101 Atomic orbital electron populations 1.21958 0.98590 1.00109 1.00850 1.21991 0.92491 0.99056 1.02264 1.18874 0.98625 0.92520 0.88203 0.95366 1.22294 0.89332 1.48682 1.04698 0.89709 1.25577 0.97610 0.92607 1.00886 1.70821 1.07329 1.40961 1.34520 0.84293 0.75787 0.77462 0.76704 1.21068 1.19783 1.20691 1.29825 1.07354 1.20605 1.05920 0.87053 1.21385 1.01888 1.01307 0.89050 1.21784 1.01308 0.95445 0.99342 1.21216 1.00616 0.93741 0.98810 1.30469 1.09867 1.09493 1.25286 1.08376 0.76365 0.79103 0.76453 1.93600 1.28408 1.85569 1.83048 1.93499 1.68934 1.73108 1.60202 0.93449 0.93411 0.93987 0.91495 0.92307 0.91995 0.89751 0.88760 0.90564 0.91621 0.89855 0.90699 0.85992 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.69 37.15 0.36 -2.25 16 2 C -0.12 -2.41 4.96 -26.73 -0.13 -2.54 16 3 C 0.04 0.85 1.14 -91.77 -0.10 0.75 16 4 H 0.03 0.67 6.81 -51.93 -0.35 0.32 16 5 C -0.61 -16.39 6.96 -34.44 -0.24 -16.63 16 6 H 0.09 2.39 5.15 -52.48 -0.27 2.12 16 7 C 0.04 1.13 5.31 -17.82 -0.09 1.03 16 8 N -0.90 -27.62 13.69 55.43 0.76 -26.86 16 9 Si 1.03 25.38 26.28 -169.99 -4.47 20.91 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.03 5.71 56.52 0.32 -5.71 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C -0.53 -9.48 2.11 -26.71 -0.06 -9.54 16 14 H 0.11 1.66 6.37 -51.93 -0.33 1.33 16 15 C -0.10 -1.58 4.46 -26.93 -0.12 -1.70 16 16 C -0.14 -1.70 5.63 -27.16 -0.15 -1.85 16 17 C -0.11 -1.28 5.73 -26.93 -0.15 -1.44 16 18 C -0.63 -8.15 6.35 37.18 0.24 -7.92 16 19 S 2.41 45.77 4.62 -107.50 -0.50 45.27 16 20 O -0.91 -21.06 15.54 -57.82 -0.90 -21.96 16 21 O -0.96 -20.86 18.11 -57.82 -1.05 -21.90 16 22 H 0.05 0.69 6.49 -51.93 -0.34 0.35 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.47 4.81 -51.93 -0.25 1.22 16 26 H 0.06 1.13 6.27 -51.93 -0.33 0.81 16 27 H 0.27 8.23 8.73 -40.82 -0.36 7.87 16 28 H 0.08 1.32 6.31 -51.93 -0.33 0.99 16 29 H 0.09 1.75 6.21 -51.93 -0.32 1.42 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.08 1.09 8.01 -51.93 -0.42 0.68 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.12 1.41 8.14 -51.92 -0.42 0.99 16 35 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -33.24 272.59 -7.62 -40.86 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.12 Total: 1.64 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: -0.46 Total: -42.08 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.76 Total: -26.86 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.95 Total: -43.86 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.47 Total: 20.91 kcal Atomic # 16 Polarization: 45.77 SS G_CDS: -0.50 Total: 45.27 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.24 -7.62 -40.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.107 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds