Wall clock time and date at job start Mon Mar 30 2020 03:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09004 * 109.46921 * 305.73984 * 3 2 1 5 5 C 1.50695 * 109.47274 * 185.73978 * 3 2 1 6 6 H 1.08004 * 120.00508 * 245.60565 * 5 3 2 7 7 C 1.37882 * 120.00071 * 65.60118 * 5 3 2 8 8 N 1.31509 * 120.00309 * 196.92117 * 7 5 3 9 9 Si 1.86800 * 119.99747 * 16.92397 * 7 5 3 10 10 H 1.48503 * 109.47115 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47182 * 299.99788 * 9 7 5 12 12 H 1.48496 * 109.47514 * 59.99599 * 9 7 5 13 13 C 1.53004 * 109.47020 * 65.74241 * 3 2 1 14 14 H 1.08996 * 109.54360 * 305.18932 * 13 3 2 15 15 C 1.53027 * 109.55276 * 65.48330 * 13 3 2 16 16 C 1.52585 * 109.98803 * 183.50545 * 15 13 3 17 17 C 1.52584 * 110.64050 * 290.01244 * 16 15 13 18 18 C 1.53035 * 109.98715 * 69.98477 * 17 16 15 19 19 S 1.81662 * 109.00156 * 296.35178 * 18 17 16 20 20 O 1.42106 * 108.66410 * 299.97016 * 19 18 17 21 21 O 1.42098 * 108.75235 * 168.65534 * 19 18 17 22 22 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 23 23 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 24 24 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 26 26 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 27 27 H 0.97007 * 119.99921 * 354.54420 * 8 7 5 28 28 H 1.09003 * 109.38329 * 303.66320 * 15 13 3 29 29 H 1.09005 * 109.38545 * 63.34024 * 15 13 3 30 30 H 1.09003 * 109.24380 * 169.71274 * 16 15 13 31 31 H 1.08999 * 109.20997 * 50.28855 * 16 15 13 32 32 H 1.09000 * 109.38725 * 309.82964 * 17 16 15 33 33 H 1.09004 * 109.38929 * 190.14394 * 17 16 15 34 34 H 1.09010 * 109.55006 * 176.49350 * 18 17 16 35 35 H 1.09001 * 109.55114 * 56.20951 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5951 1.9852 -0.8342 5 6 3.5402 1.4450 -0.1421 6 1 4.1588 1.8035 0.6674 7 6 4.1232 0.9893 -1.3055 8 7 5.4002 0.6757 -1.3221 9 14 3.0991 0.8177 -2.8583 10 1 3.9546 0.3128 -3.9622 11 1 1.9884 -0.1377 -2.6157 12 1 2.5403 2.1418 -3.2318 13 6 1.6512 2.1209 1.3152 14 1 0.5745 2.0385 1.4636 15 6 2.3835 1.4447 2.4763 16 6 1.9373 2.0560 3.8012 17 6 2.4610 3.4825 3.9388 18 6 1.7379 4.4026 2.9525 19 16 2.1245 3.8740 1.2581 20 8 3.5297 3.9594 1.0645 21 8 1.2563 4.5503 0.3592 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.9500 0.8390 -0.5397 28 1 2.1567 0.3785 2.4752 29 1 3.4579 1.5844 2.3569 30 1 2.3211 1.4516 4.6231 31 1 0.8481 2.0677 3.8420 32 1 3.5306 3.4971 3.7294 33 1 2.2881 3.8350 4.9557 34 1 2.0723 5.4297 3.0995 35 1 0.6622 4.3407 3.1174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260351037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:43 Heat of formation + Delta-G solvation = -116.274432 kcal Electronic energy + Delta-G solvation = -17609.423057 eV Core-core repulsion = 14926.019257 eV Total energy + Delta-G solvation = -2683.403801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.11849 -37.79576 -36.85838 -36.41845 -34.08895 -31.99314 -29.60519 -27.64732 -24.86360 -23.97245 -21.89748 -21.00042 -19.77408 -19.17365 -17.67895 -17.36442 -16.52628 -16.18199 -15.61516 -15.55577 -14.86442 -14.64570 -14.49928 -14.16649 -13.89973 -13.48640 -13.18322 -12.89499 -12.84550 -12.80338 -12.46102 -12.34393 -12.19029 -12.05221 -11.93264 -11.74838 -11.67370 -11.30028 -11.02101 -10.88595 -10.37828 -10.18087 -8.63409 -6.22327 -0.74222 1.40108 1.50059 1.65108 2.03350 2.48896 2.92668 3.13479 3.21031 3.75036 3.77370 3.87412 3.95446 4.17341 4.30816 4.47912 4.50193 4.55208 4.69869 4.75072 4.78424 4.97565 5.01489 5.04763 5.23792 5.25226 5.29620 5.32624 5.51090 5.53683 5.69713 6.07136 6.23154 6.79353 7.54309 8.76116 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025287 B = 0.010748 C = 0.009961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.028394 B = 2604.581862 C = 2810.393772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.026 3.974 4 H 0.014 0.986 5 C -0.595 4.595 6 H 0.057 0.943 7 C -0.021 4.021 8 N -0.944 5.944 9 Si 1.056 2.944 10 H -0.290 1.290 11 H -0.229 1.229 12 H -0.281 1.281 13 C -0.522 4.522 14 H 0.155 0.845 15 C -0.097 4.097 16 C -0.136 4.136 17 C -0.113 4.113 18 C -0.583 4.583 19 S 2.381 3.619 20 O -0.976 6.976 21 O -1.001 7.001 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.252 0.748 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 2.072 12.836 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.006 3.994 4 H 0.032 0.968 5 C -0.633 4.633 6 H 0.075 0.925 7 C -0.219 4.219 8 N -0.581 5.581 9 Si 0.879 3.121 10 H -0.217 1.217 11 H -0.152 1.152 12 H -0.207 1.207 13 C -0.635 4.635 14 H 0.172 0.828 15 C -0.136 4.136 16 C -0.173 4.173 17 C -0.151 4.151 18 C -0.715 4.715 19 S 2.571 3.429 20 O -0.973 6.973 21 O -0.999 6.999 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.161 0.839 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.689 2.101 10.540 16.629 hybrid contribution 0.570 0.389 1.587 1.731 sum -12.119 2.490 12.127 17.324 Atomic orbital electron populations 1.21919 0.94994 1.02084 1.02091 1.21853 0.95656 0.96617 1.01535 1.18876 0.95228 0.94788 0.90515 0.96763 1.22559 0.92241 1.45411 1.03076 0.92461 1.26807 0.97861 0.93086 1.04161 1.70949 1.08534 1.44756 1.33902 0.83975 0.75991 0.78447 0.73640 1.21651 1.15240 1.20687 1.29744 1.10069 1.19417 1.04224 0.82752 1.21365 0.99364 1.01853 0.90970 1.21793 1.03455 0.95126 0.96888 1.21386 0.99350 0.93845 1.00515 1.30105 1.12839 1.10596 1.18004 1.08808 0.74905 0.79664 0.79509 1.93533 1.31735 1.86359 1.85646 1.93441 1.68787 1.73761 1.63867 0.90867 0.93575 0.91702 0.93769 0.91723 0.93884 0.89331 0.92825 0.88356 0.88125 0.91988 0.86348 0.83867 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.69 71.98 0.70 -3.74 16 2 C -0.12 -4.54 4.96 30.59 0.15 -4.39 16 3 C 0.03 1.15 1.14 -11.54 -0.01 1.14 16 4 H 0.01 0.68 6.81 -2.39 -0.02 0.66 16 5 C -0.59 -33.28 6.96 25.60 0.18 -33.11 16 6 H 0.06 3.48 5.15 -2.91 -0.01 3.47 16 7 C -0.02 -1.27 5.31 84.66 0.45 -0.82 16 8 N -0.94 -61.36 13.69 21.45 0.29 -61.06 16 9 Si 1.06 52.40 26.28 68.60 1.80 54.21 16 10 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.23 -9.70 5.71 99.48 0.57 -9.13 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 13 C -0.52 -17.83 2.11 30.60 0.06 -17.77 16 14 H 0.15 3.87 6.37 -2.39 -0.02 3.85 16 15 C -0.10 -2.93 4.46 30.47 0.14 -2.79 16 16 C -0.14 -2.56 5.63 30.32 0.17 -2.39 16 17 C -0.11 -2.21 5.73 30.47 0.17 -2.03 16 18 C -0.58 -12.52 6.35 71.99 0.46 -12.06 16 19 S 2.38 89.06 4.62 -56.49 -0.26 88.80 16 20 O -0.98 -47.71 15.54 -127.38 -1.98 -49.69 16 21 O -1.00 -43.39 18.11 -127.38 -2.31 -45.69 16 22 H 0.07 1.73 6.49 -2.39 -0.02 1.71 16 23 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.04 1.88 4.81 -2.39 -0.01 1.87 16 26 H 0.06 2.37 6.27 -2.38 -0.01 2.36 16 27 H 0.25 16.62 8.73 -92.70 -0.81 15.81 16 28 H 0.09 2.56 6.31 -2.39 -0.02 2.54 16 29 H 0.05 2.05 6.21 -2.38 -0.01 2.04 16 30 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 32 H 0.06 1.52 8.01 -2.39 -0.02 1.50 16 33 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.14 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.17 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -80.49 272.59 0.92 -79.57 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.90 Total: 11.85 kcal Atomic # 6 Polarization: -80.44 SS G_CDS: 2.47 Total: -77.97 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.29 Total: -61.06 kcal Atomic # 8 Polarization: -91.10 SS G_CDS: -4.29 Total: -95.38 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 1.80 Total: 54.21 kcal Atomic # 16 Polarization: 89.06 SS G_CDS: -0.26 Total: 88.80 kcal Total: -80.49 0.92 -79.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260351037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.704 kcal (2) G-P(sol) polarization free energy of solvation -80.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds