Wall clock time and date at job start Mon Mar 30 2020 03:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47192 * 2 1 4 4 H 1.09005 * 109.47001 * 304.53204 * 3 2 1 5 5 C 1.50699 * 109.47469 * 64.53124 * 3 2 1 6 6 H 1.07998 * 119.99897 * 61.91492 * 5 3 2 7 7 C 1.37879 * 120.00020 * 241.92716 * 5 3 2 8 8 N 1.31514 * 119.99914 * 173.64675 * 7 5 3 9 9 Si 1.86799 * 120.00001 * 353.64049 * 7 5 3 10 10 H 1.48508 * 109.46763 * 84.54892 * 9 7 5 11 11 H 1.48500 * 109.47364 * 204.54519 * 9 7 5 12 12 H 1.48496 * 109.47160 * 324.55019 * 9 7 5 13 13 C 1.52996 * 109.47144 * 184.53275 * 3 2 1 14 14 H 1.08997 * 109.38444 * 300.20970 * 13 3 2 15 15 C 1.52587 * 109.38493 * 59.99966 * 13 3 2 16 16 C 1.52590 * 110.64257 * 190.14462 * 15 13 3 17 17 C 1.53038 * 109.98782 * 290.01247 * 16 15 13 18 18 S 1.81672 * 108.99714 * 63.64830 * 17 16 15 19 19 O 1.42098 * 108.66674 * 60.03159 * 18 17 16 20 20 O 1.42098 * 108.66269 * 191.28017 * 18 17 16 21 21 C 1.53333 * 109.34394 * 180.58881 * 13 3 2 22 22 H 1.09002 * 109.46798 * 298.60953 * 1 2 3 23 23 H 1.09000 * 109.46724 * 58.60923 * 1 2 3 24 24 H 1.09003 * 109.46959 * 178.60883 * 1 2 3 25 25 H 1.09000 * 109.47101 * 239.99715 * 2 1 3 26 26 H 1.09005 * 109.46913 * 119.99771 * 2 1 3 27 27 H 0.96999 * 119.99859 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.24386 * 69.84721 * 15 13 3 29 29 H 1.08994 * 109.21070 * 310.42066 * 15 13 3 30 30 H 1.09001 * 109.38871 * 169.85404 * 16 15 13 31 31 H 1.09008 * 109.29897 * 50.11761 * 16 15 13 32 32 H 1.08994 * 109.55107 * 303.79203 * 17 16 15 33 33 H 1.08994 * 109.63101 * 183.54772 * 17 16 15 34 34 H 1.09012 * 109.71984 * 56.38227 * 21 13 3 35 35 H 1.08994 * 109.51452 * 296.00760 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6119 1.9792 -0.8466 5 6 1.6315 2.1198 1.2827 6 1 1.9896 1.7438 2.2297 7 6 0.8004 3.2193 1.2473 8 7 0.3431 3.7343 2.3677 9 14 0.3239 3.9776 -0.3920 10 1 -0.8389 3.2463 -0.9563 11 1 -0.0382 5.4037 -0.1912 12 1 1.4700 3.8855 -1.3318 13 6 3.5658 1.4439 -0.1140 14 1 3.9922 0.9037 0.7312 15 6 3.9772 0.7578 -1.4133 16 6 5.4840 0.5187 -1.4416 17 6 6.2225 1.8512 -1.5871 18 16 5.8913 2.8738 -0.1225 19 8 6.3548 2.1825 1.0292 20 8 6.3546 4.1932 -0.3749 21 6 4.0748 2.8902 -0.0989 22 1 -0.3633 0.4921 0.9022 23 1 -0.3633 0.5353 -0.8773 24 1 -0.3633 -1.0274 -0.0250 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 -0.2419 4.5077 2.3428 28 1 3.6978 1.3889 -2.2570 29 1 3.4603 -0.1984 -1.4933 30 1 5.7322 -0.1263 -2.2845 31 1 5.7895 0.0352 -0.5137 32 1 5.8703 2.3679 -2.4799 33 1 7.2938 1.6690 -1.6700 34 1 3.7263 3.3934 0.8031 35 1 3.7033 3.4162 -0.9783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384155.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:56 Heat of formation + Delta-G solvation = -120.185774 kcal Electronic energy + Delta-G solvation = -17222.544714 eV Core-core repulsion = 14538.971305 eV Total energy + Delta-G solvation = -2683.573409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.30895 -37.90606 -36.99268 -35.74759 -33.85277 -32.42992 -28.75666 -28.53596 -25.68944 -23.23695 -22.07380 -20.65087 -19.72382 -19.02237 -17.57250 -17.16802 -16.61218 -16.27683 -15.82232 -15.20136 -14.89843 -14.82137 -14.60303 -14.06893 -13.75103 -13.62653 -13.15661 -13.11757 -13.01944 -12.84274 -12.52874 -12.35425 -12.32284 -12.08283 -11.86908 -11.71965 -11.50145 -11.38613 -10.93896 -10.79371 -10.62744 -10.41503 -8.22346 -6.21858 -0.79600 1.33691 1.34716 1.44230 1.88109 2.37582 2.81854 3.09732 3.14582 3.80223 3.85843 3.93985 4.01816 4.24356 4.35130 4.52126 4.61011 4.67591 4.76251 4.81670 4.92664 4.97791 5.11807 5.20463 5.25273 5.35393 5.40604 5.49999 5.58877 5.70739 5.75218 5.85886 6.41904 6.86052 7.41845 8.95463 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.009852 C = 0.008269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.388189 B = 2841.356118 C = 3385.131540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.015 3.985 4 H 0.043 0.957 5 C -0.489 4.489 6 H 0.025 0.975 7 C 0.013 3.987 8 N -0.958 5.958 9 Si 0.917 3.083 10 H -0.265 1.265 11 H -0.303 1.303 12 H -0.227 1.227 13 C -0.068 4.068 14 H 0.067 0.933 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.571 4.571 18 S 2.402 3.598 19 O -0.985 6.985 20 O -0.995 6.995 21 C -0.586 4.586 22 H 0.028 0.972 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.260 0.740 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.112 0.888 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 -7.578 -14.376 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.005 4.005 4 H 0.061 0.939 5 C -0.527 4.527 6 H 0.043 0.957 7 C -0.183 4.183 8 N -0.599 5.599 9 Si 0.742 3.258 10 H -0.190 1.190 11 H -0.231 1.231 12 H -0.150 1.150 13 C -0.088 4.088 14 H 0.085 0.915 15 C -0.181 4.181 16 C -0.147 4.147 17 C -0.705 4.705 18 S 2.592 3.408 19 O -0.982 6.982 20 O -0.992 6.992 21 C -0.716 4.716 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.180 0.820 33 H 0.174 0.826 34 H 0.130 0.870 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.052 -6.991 -13.686 17.836 hybrid contribution -1.250 0.836 0.014 1.504 sum 7.802 -6.155 -13.672 16.902 Atomic orbital electron populations 1.21652 0.97270 1.00432 1.00490 1.21660 0.95206 0.97131 1.00871 1.19325 0.91693 0.94488 0.95023 0.93891 1.21187 1.26974 1.11486 0.93051 0.95680 1.25868 0.95866 0.97594 0.98966 1.70080 1.35658 1.25019 1.29124 0.86206 0.80579 0.77024 0.81960 1.19013 1.23060 1.14979 1.21043 0.98749 0.90044 0.98922 0.91489 1.22013 0.95926 1.03466 0.96691 1.21381 0.93554 0.94103 1.05637 1.29987 1.11778 1.10745 1.17971 1.08126 0.78477 0.75491 0.78703 1.93495 1.79759 1.75656 1.49323 1.93489 1.80035 1.38795 1.86909 1.30266 1.22761 1.07011 1.11572 0.95280 0.93864 0.92009 0.89962 0.93886 0.93124 0.89326 0.87946 0.86202 0.90543 0.82025 0.82635 0.86960 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.04 9.70 71.98 0.70 -4.34 16 2 C -0.11 -3.80 5.18 30.59 0.16 -3.64 16 3 C 0.01 0.57 1.35 -11.54 -0.02 0.56 16 4 H 0.04 1.66 4.71 -2.38 -0.01 1.65 16 5 C -0.49 -25.78 6.48 25.60 0.17 -25.62 16 6 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 7 C 0.01 0.72 5.47 84.66 0.46 1.18 16 8 N -0.96 -59.33 13.96 21.45 0.30 -59.04 16 9 Si 0.92 41.66 26.99 68.60 1.85 43.51 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.23 -8.81 6.39 99.48 0.64 -8.17 16 13 C -0.07 -2.21 1.60 -10.82 -0.02 -2.23 16 14 H 0.07 2.36 8.00 -2.39 -0.02 2.35 16 15 C -0.14 -3.00 4.83 30.32 0.15 -2.86 16 16 C -0.11 -1.76 5.73 30.47 0.17 -1.59 16 17 C -0.57 -9.42 6.35 71.99 0.46 -8.97 16 18 S 2.40 71.45 5.30 -56.49 -0.30 71.15 16 19 O -0.99 -36.98 17.93 -127.38 -2.28 -39.26 16 20 O -1.00 -35.96 18.10 -127.38 -2.31 -38.27 16 21 C -0.59 -19.86 5.46 72.09 0.39 -19.47 16 22 H 0.03 1.25 7.41 -2.39 -0.02 1.23 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.08 2.11 5.98 -2.39 -0.01 2.09 16 26 H 0.04 1.54 8.14 -2.38 -0.02 1.53 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 29 H 0.10 1.86 5.81 -2.39 -0.01 1.85 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.40 8.01 -2.38 -0.02 1.38 16 32 H 0.16 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.16 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 4.72 7.09 -2.38 -0.02 4.71 16 35 H 0.14 4.04 7.80 -2.39 -0.02 4.02 16 Total: -1.00 -76.01 283.16 0.87 -75.14 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.99 Total: 13.73 kcal Atomic # 6 Polarization: -69.59 SS G_CDS: 2.62 Total: -66.97 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.30 Total: -59.04 kcal Atomic # 8 Polarization: -72.94 SS G_CDS: -4.59 Total: -77.53 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.85 Total: 43.51 kcal Atomic # 16 Polarization: 71.45 SS G_CDS: -0.30 Total: 71.15 kcal Total: -76.01 0.87 -75.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384155.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.048 kcal (2) G-P(sol) polarization free energy of solvation -76.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds