Wall clock time and date at job start Mon Mar 30 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46695 * 2 1 4 4 H 1.09003 * 109.46920 * 182.16329 * 3 2 1 5 5 C 1.50699 * 109.47008 * 62.16644 * 3 2 1 6 6 H 1.07995 * 119.99750 * 243.68266 * 5 3 2 7 7 C 1.37875 * 120.00183 * 63.68705 * 5 3 2 8 8 N 1.31505 * 119.99996 * 196.32738 * 7 5 3 9 9 Si 1.86804 * 119.99724 * 16.32414 * 7 5 3 10 10 H 1.48497 * 109.47027 * 90.91661 * 9 7 5 11 11 H 1.48509 * 109.46994 * 210.91351 * 9 7 5 12 12 H 1.48501 * 109.47463 * 330.91435 * 9 7 5 13 13 C 1.53001 * 109.47031 * 302.16253 * 3 2 1 14 14 H 1.09003 * 109.38048 * 63.34526 * 13 3 2 15 15 C 1.52586 * 109.38299 * 183.12805 * 13 3 2 16 16 C 1.52589 * 110.64144 * 190.04212 * 15 13 3 17 17 C 1.53036 * 109.98702 * 290.01297 * 16 15 13 18 18 S 1.81677 * 108.99672 * 63.64948 * 17 16 15 19 19 O 1.42101 * 108.66423 * 191.37170 * 18 17 16 20 20 O 1.42095 * 108.66114 * 60.03135 * 18 17 16 21 21 C 1.53034 * 109.30305 * 303.60304 * 13 3 2 22 22 H 1.08991 * 109.47409 * 300.52381 * 1 2 3 23 23 H 1.09004 * 109.47414 * 60.52982 * 1 2 3 24 24 H 1.09004 * 109.46594 * 180.52677 * 1 2 3 25 25 H 1.09004 * 109.47167 * 240.00240 * 2 1 3 26 26 H 1.08996 * 109.47566 * 119.99895 * 2 1 3 27 27 H 0.97004 * 120.00196 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.24140 * 69.74555 * 15 13 3 29 29 H 1.09002 * 109.24236 * 310.34413 * 15 13 3 30 30 H 1.08998 * 109.38571 * 50.17447 * 16 15 13 31 31 H 1.09004 * 109.38100 * 169.85894 * 16 15 13 32 32 H 1.08996 * 109.55337 * 183.50130 * 17 16 15 33 33 H 1.09004 * 109.54940 * 303.79667 * 17 16 15 34 34 H 1.08996 * 109.54981 * 296.10832 * 21 13 3 35 35 H 1.09001 * 109.54710 * 56.29818 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4429 -0.0388 5 6 1.5819 2.1373 1.2564 6 1 0.9099 2.9803 1.1930 7 6 2.0207 1.6966 2.4870 8 7 1.3949 2.0715 3.5811 9 14 3.5042 0.5670 2.5998 10 1 4.7364 1.3818 2.7511 11 1 3.3558 -0.3290 3.7748 12 1 3.5996 -0.2499 1.3633 13 6 1.4859 2.1794 -1.2211 14 1 0.3993 2.2300 -1.1508 15 6 2.0572 3.5936 -1.2616 16 6 1.3418 4.4328 -2.3162 17 6 1.7166 3.9434 -3.7169 18 16 1.1232 2.2390 -3.9262 19 8 1.6958 1.7004 -5.1100 20 8 -0.2887 2.2264 -3.7667 21 6 1.8780 1.4203 -2.4908 22 1 -0.3634 0.5219 0.8852 23 1 -0.3634 0.5056 -0.8947 24 1 -0.3633 -1.0277 0.0094 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7039 1.7618 4.4469 28 1 3.1195 3.5452 -1.5011 29 1 1.9307 4.0602 -0.2847 30 1 0.2641 4.3449 -2.1786 31 1 1.6348 5.4771 -2.2074 32 1 1.2515 4.5858 -4.4645 33 1 2.8000 3.9694 -3.8346 34 1 2.9627 1.4237 -2.5975 35 1 1.5210 0.3924 -2.4261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260384161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:02 Heat of formation + Delta-G solvation = -90.245057 kcal Electronic energy + Delta-G solvation = -17245.049471 eV Core-core repulsion = 14562.774389 eV Total energy + Delta-G solvation = -2682.275082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.12946 -36.72761 -35.83005 -34.52697 -32.11048 -30.46549 -28.07448 -26.69691 -23.50591 -22.98334 -20.81451 -18.82789 -18.61487 -16.74197 -16.47643 -16.04449 -15.43980 -14.68348 -14.62378 -14.18973 -13.43613 -13.31334 -13.05397 -12.82044 -12.46405 -12.23220 -11.95603 -11.82691 -11.58982 -11.22010 -11.06818 -11.02564 -10.92927 -10.61045 -10.39634 -10.25177 -10.09607 -9.67928 -9.60764 -9.13742 -8.98507 -8.39946 -6.14672 -4.07721 0.24725 2.86356 3.23813 3.34191 3.36393 3.82107 4.14145 4.38799 4.74009 4.78456 5.02581 5.08946 5.20147 5.26799 5.46937 5.62006 5.83088 5.88422 6.01296 6.11147 6.14757 6.25939 6.37340 6.58581 6.63787 6.71608 6.83355 7.04098 7.24702 7.30140 7.39640 7.75206 8.45316 8.92386 9.51786 10.97942 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034348 B = 0.007854 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.989116 B = 3564.042236 C = 3768.087718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.029 3.971 4 H 0.025 0.975 5 C -0.513 4.513 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.891 5.891 9 Si 0.859 3.141 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.253 1.253 13 C -0.060 4.060 14 H 0.089 0.911 15 C -0.133 4.133 16 C -0.110 4.110 17 C -0.601 4.601 18 S 2.404 3.596 19 O -0.960 6.960 20 O -0.941 6.941 21 C -0.593 4.593 22 H 0.074 0.926 23 H 0.045 0.955 24 H 0.028 0.972 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.263 0.737 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 1.849 -11.329 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.009 3.991 4 H 0.043 0.957 5 C -0.551 4.551 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.687 3.313 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.178 1.178 13 C -0.080 4.080 14 H 0.108 0.892 15 C -0.170 4.170 16 C -0.148 4.148 17 C -0.731 4.731 18 S 2.589 3.411 19 O -0.957 6.957 20 O -0.938 6.938 21 C -0.724 4.724 22 H 0.093 0.907 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.624 1.485 -11.839 12.042 hybrid contribution 1.466 -0.349 0.766 1.690 sum 3.090 1.136 -11.074 11.553 Atomic orbital electron populations 1.21746 0.96458 0.99210 1.02715 1.21981 0.96202 0.98951 0.99015 1.19070 0.95489 0.91600 0.92919 0.95703 1.20866 1.29478 1.16346 0.88388 0.90573 1.24915 0.96280 0.95523 0.95805 1.69979 1.38616 1.45983 0.98252 0.87280 0.84359 0.81511 0.78167 1.20851 1.21655 1.17761 1.20916 1.01813 0.93248 0.91979 0.89245 1.21777 0.99295 0.95084 1.00823 1.21351 1.02212 1.01563 0.89691 1.30203 1.12351 1.23822 1.06695 1.08272 0.76584 0.78984 0.77245 1.93547 1.80163 1.77248 1.44749 1.93567 1.27456 1.85967 1.86859 1.30386 1.13012 1.12992 1.16047 0.90690 0.93629 0.95280 0.95117 0.92765 0.92758 0.91834 0.87770 0.90003 0.90211 0.85722 0.85355 0.85407 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.28 37.16 0.34 -2.45 16 2 C -0.12 -2.48 4.53 -26.73 -0.12 -2.60 16 3 C 0.03 0.60 1.22 -91.77 -0.11 0.49 16 4 H 0.02 0.52 6.85 -51.93 -0.36 0.16 16 5 C -0.51 -12.72 6.88 -34.44 -0.24 -12.95 16 6 H 0.08 2.03 7.37 -52.49 -0.39 1.65 16 7 C 0.08 2.05 5.33 -17.82 -0.10 1.96 16 8 N -0.89 -25.60 13.96 55.43 0.77 -24.83 16 9 Si 0.86 20.08 25.82 -169.99 -4.39 15.69 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.25 -5.54 5.44 56.52 0.31 -5.24 16 13 C -0.06 -1.01 1.05 -90.81 -0.10 -1.11 16 14 H 0.09 1.58 6.46 -51.93 -0.34 1.25 16 15 C -0.13 -1.96 4.85 -27.15 -0.13 -2.09 16 16 C -0.11 -1.33 5.73 -26.92 -0.15 -1.49 16 17 C -0.60 -6.40 6.35 37.18 0.24 -6.16 16 18 S 2.40 32.57 5.31 -107.50 -0.57 32.00 16 19 O -0.96 -15.47 18.10 -57.81 -1.05 -16.52 16 20 O -0.94 -15.88 17.94 -57.81 -1.04 -16.92 16 21 C -0.59 -8.26 5.28 37.17 0.20 -8.07 16 22 H 0.07 1.64 7.27 -51.93 -0.38 1.26 16 23 H 0.04 0.82 6.49 -51.93 -0.34 0.48 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.03 0.54 6.39 -51.93 -0.33 0.20 16 26 H 0.05 1.17 4.83 -51.93 -0.25 0.92 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.10 1.76 6.61 -51.93 -0.34 1.42 16 30 H 0.08 1.03 8.01 -51.93 -0.42 0.61 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.14 1.86 6.19 -51.93 -0.32 1.54 16 LS Contribution 274.88 15.07 4.14 4.14 Total: -1.00 -31.67 274.88 -7.52 -39.19 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.22 Total: 1.70 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: -0.17 Total: -34.47 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.77 Total: -24.83 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -2.08 Total: -33.43 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.39 Total: 15.69 kcal Atomic # 16 Polarization: 32.57 SS G_CDS: -0.57 Total: 32.00 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.67 -7.52 -39.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.056 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds