Wall clock time and date at job start Mon Mar 30 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46695 * 2 1 4 4 H 1.09003 * 109.46920 * 182.16329 * 3 2 1 5 5 C 1.50699 * 109.47008 * 62.16644 * 3 2 1 6 6 H 1.07995 * 119.99750 * 243.68266 * 5 3 2 7 7 C 1.37875 * 120.00183 * 63.68705 * 5 3 2 8 8 N 1.31505 * 119.99996 * 196.32738 * 7 5 3 9 9 Si 1.86804 * 119.99724 * 16.32414 * 7 5 3 10 10 H 1.48497 * 109.47027 * 90.91661 * 9 7 5 11 11 H 1.48509 * 109.46994 * 210.91351 * 9 7 5 12 12 H 1.48501 * 109.47463 * 330.91435 * 9 7 5 13 13 C 1.53001 * 109.47031 * 302.16253 * 3 2 1 14 14 H 1.09003 * 109.38048 * 63.34526 * 13 3 2 15 15 C 1.52586 * 109.38299 * 183.12805 * 13 3 2 16 16 C 1.52589 * 110.64144 * 190.04212 * 15 13 3 17 17 C 1.53036 * 109.98702 * 290.01297 * 16 15 13 18 18 S 1.81677 * 108.99672 * 63.64948 * 17 16 15 19 19 O 1.42101 * 108.66423 * 191.37170 * 18 17 16 20 20 O 1.42095 * 108.66114 * 60.03135 * 18 17 16 21 21 C 1.53034 * 109.30305 * 303.60304 * 13 3 2 22 22 H 1.08991 * 109.47409 * 300.52381 * 1 2 3 23 23 H 1.09004 * 109.47414 * 60.52982 * 1 2 3 24 24 H 1.09004 * 109.46594 * 180.52677 * 1 2 3 25 25 H 1.09004 * 109.47167 * 240.00240 * 2 1 3 26 26 H 1.08996 * 109.47566 * 119.99895 * 2 1 3 27 27 H 0.97004 * 120.00196 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.24140 * 69.74555 * 15 13 3 29 29 H 1.09002 * 109.24236 * 310.34413 * 15 13 3 30 30 H 1.08998 * 109.38571 * 50.17447 * 16 15 13 31 31 H 1.09004 * 109.38100 * 169.85894 * 16 15 13 32 32 H 1.08996 * 109.55337 * 183.50130 * 17 16 15 33 33 H 1.09004 * 109.54940 * 303.79667 * 17 16 15 34 34 H 1.08996 * 109.54981 * 296.10832 * 21 13 3 35 35 H 1.09001 * 109.54710 * 56.29818 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4429 -0.0388 5 6 1.5819 2.1373 1.2564 6 1 0.9099 2.9803 1.1930 7 6 2.0207 1.6966 2.4870 8 7 1.3949 2.0715 3.5811 9 14 3.5042 0.5670 2.5998 10 1 4.7364 1.3818 2.7511 11 1 3.3558 -0.3290 3.7748 12 1 3.5996 -0.2499 1.3633 13 6 1.4859 2.1794 -1.2211 14 1 0.3993 2.2300 -1.1508 15 6 2.0572 3.5936 -1.2616 16 6 1.3418 4.4328 -2.3162 17 6 1.7166 3.9434 -3.7169 18 16 1.1232 2.2390 -3.9262 19 8 1.6958 1.7004 -5.1100 20 8 -0.2887 2.2264 -3.7667 21 6 1.8780 1.4203 -2.4908 22 1 -0.3634 0.5219 0.8852 23 1 -0.3634 0.5056 -0.8947 24 1 -0.3633 -1.0277 0.0094 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7039 1.7618 4.4469 28 1 3.1195 3.5452 -1.5011 29 1 1.9307 4.0602 -0.2847 30 1 0.2641 4.3449 -2.1786 31 1 1.6348 5.4771 -2.2074 32 1 1.2515 4.5858 -4.4645 33 1 2.8000 3.9694 -3.8346 34 1 2.9627 1.4237 -2.5975 35 1 1.5210 0.3924 -2.4261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:01 Heat of formation + Delta-G solvation = -113.240429 kcal Electronic energy + Delta-G solvation = -17246.046625 eV Core-core repulsion = 14562.774389 eV Total energy + Delta-G solvation = -2683.272236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48065 -37.91647 -36.99727 -35.86824 -33.97979 -31.75807 -29.56843 -27.98815 -25.21045 -24.32274 -22.02515 -20.37493 -19.71507 -18.49547 -17.69678 -17.20240 -16.57974 -16.32652 -15.93251 -15.47861 -14.98886 -14.72912 -14.35582 -14.25155 -13.85409 -13.54020 -13.16868 -13.00903 -12.96200 -12.76481 -12.64627 -12.32116 -12.20593 -12.14901 -11.85655 -11.70698 -11.40126 -11.29772 -11.05575 -10.82311 -10.50526 -10.36609 -8.19864 -6.13934 -0.79784 1.37777 1.43423 1.50208 1.84728 2.43606 2.79316 3.08990 3.17377 3.79016 3.79896 3.96038 3.98569 4.22192 4.34869 4.50254 4.55407 4.66458 4.73628 4.78462 4.90561 5.00743 5.09142 5.14102 5.20818 5.35030 5.46398 5.53891 5.62953 5.73008 5.76130 5.89827 6.45228 6.90390 7.47677 8.96400 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034348 B = 0.007854 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.989116 B = 3564.042236 C = 3768.087718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.024 3.976 4 H 0.034 0.966 5 C -0.495 4.495 6 H 0.041 0.959 7 C 0.018 3.982 8 N -0.946 5.946 9 Si 0.914 3.086 10 H -0.279 1.279 11 H -0.302 1.302 12 H -0.224 1.224 13 C -0.061 4.061 14 H 0.070 0.930 15 C -0.134 4.134 16 C -0.109 4.109 17 C -0.579 4.579 18 S 2.415 3.585 19 O -0.984 6.984 20 O -0.982 6.982 21 C -0.596 4.596 22 H 0.037 0.963 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.259 0.741 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 1.754 -13.864 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.004 3.996 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.059 0.941 7 C -0.179 4.179 8 N -0.587 5.587 9 Si 0.740 3.260 10 H -0.206 1.206 11 H -0.229 1.229 12 H -0.146 1.146 13 C -0.080 4.080 14 H 0.088 0.912 15 C -0.171 4.171 16 C -0.148 4.148 17 C -0.712 4.712 18 S 2.603 3.397 19 O -0.982 6.982 20 O -0.979 6.979 21 C -0.726 4.726 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.518 1.352 -14.410 14.895 hybrid contribution 0.813 -0.224 1.541 1.757 sum 4.331 1.128 -12.869 13.625 Atomic orbital electron populations 1.21680 0.96509 1.00142 1.01427 1.22003 0.96287 0.98531 0.99859 1.19102 0.96005 0.92068 0.92444 0.94774 1.21150 1.27204 1.14702 0.90219 0.94093 1.25685 0.98975 0.97634 0.95631 1.70131 1.40868 1.48856 0.98823 0.86390 0.80907 0.79913 0.78827 1.20566 1.22864 1.14630 1.20769 1.00733 0.94607 0.91896 0.91152 1.21745 1.01102 0.93926 1.00363 1.21316 1.01346 1.02416 0.89696 1.30034 1.14624 1.20303 1.06200 1.07774 0.75431 0.80170 0.76291 1.93518 1.80246 1.78758 1.45643 1.93518 1.30201 1.87065 1.87164 1.30361 1.15143 1.12772 1.14333 0.94390 0.92542 0.93218 0.91636 0.94385 0.93201 0.89329 0.90925 0.91119 0.87794 0.83063 0.81999 0.82352 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 9.28 71.98 0.67 -4.70 16 2 C -0.13 -4.93 4.53 30.60 0.14 -4.79 16 3 C 0.02 0.94 1.22 -11.54 -0.01 0.92 16 4 H 0.03 1.31 6.85 -2.39 -0.02 1.30 16 5 C -0.49 -25.06 6.88 25.60 0.18 -24.88 16 6 H 0.04 2.31 7.37 -2.91 -0.02 2.28 16 7 C 0.02 0.96 5.33 84.66 0.45 1.41 16 8 N -0.95 -56.76 13.96 21.45 0.30 -56.46 16 9 Si 0.91 41.32 25.82 68.60 1.77 43.09 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.22 -8.96 5.44 99.48 0.54 -8.41 16 13 C -0.06 -1.94 1.05 -10.92 -0.01 -1.95 16 14 H 0.07 2.49 6.46 -2.39 -0.02 2.48 16 15 C -0.13 -3.67 4.85 30.32 0.15 -3.52 16 16 C -0.11 -2.32 5.73 30.47 0.17 -2.14 16 17 C -0.58 -9.66 6.35 71.99 0.46 -9.20 16 18 S 2.41 58.73 5.31 -56.49 -0.30 58.43 16 19 O -0.98 -28.88 18.10 -127.39 -2.31 -31.19 16 20 O -0.98 -31.95 17.94 -127.39 -2.29 -34.24 16 21 C -0.60 -14.65 5.28 71.99 0.38 -14.27 16 22 H 0.04 1.70 7.27 -2.39 -0.02 1.68 16 23 H 0.06 2.00 6.49 -2.38 -0.02 1.99 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 2.06 6.39 -2.39 -0.02 2.04 16 26 H 0.04 1.56 4.83 -2.39 -0.01 1.55 16 27 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.09 1.96 8.09 -2.39 -0.02 1.95 16 29 H 0.07 2.46 6.61 -2.39 -0.02 2.44 16 30 H 0.07 1.67 8.01 -2.39 -0.02 1.65 16 31 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.16 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.16 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.14 3.32 6.19 -2.39 -0.01 3.31 16 Total: -1.00 -71.02 274.88 0.65 -70.37 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.91 Total: 13.12 kcal Atomic # 6 Polarization: -65.70 SS G_CDS: 2.57 Total: -63.13 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.30 Total: -56.46 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -4.59 Total: -65.42 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.77 Total: 43.09 kcal Atomic # 16 Polarization: 58.73 SS G_CDS: -0.30 Total: 58.43 kcal Total: -71.02 0.65 -70.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.872 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds