Wall clock time and date at job start Mon Mar 30 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47152 * 2 1 4 4 H 1.09002 * 109.47166 * 305.70736 * 3 2 1 5 5 C 1.53004 * 109.47403 * 65.70649 * 3 2 1 6 6 C 1.50697 * 109.47144 * 61.89214 * 5 3 2 7 7 H 1.08001 * 120.00000 * 354.98898 * 6 5 3 8 8 C 1.37880 * 119.99946 * 174.70330 * 6 5 3 9 9 N 1.31508 * 119.99961 * 180.27675 * 8 6 5 10 10 Si 1.86797 * 119.99937 * 0.28260 * 8 6 5 11 11 H 1.48505 * 109.47053 * 89.99298 * 10 8 6 12 12 H 1.48501 * 109.47216 * 209.99239 * 10 8 6 13 13 H 1.48500 * 109.47178 * 329.99920 * 10 8 6 14 14 C 1.52997 * 109.47456 * 185.70528 * 3 2 1 15 15 H 1.09002 * 110.28281 * 302.88552 * 14 3 2 16 16 C 1.54167 * 110.32254 * 180.65702 * 14 3 2 17 17 C 1.53875 * 108.70668 * 213.18852 * 16 14 3 18 18 C 1.55050 * 106.62173 * 47.18604 * 17 16 14 19 19 S 1.82926 * 110.31808 * 64.99921 * 14 3 2 20 20 O 1.42097 * 109.35205 * 234.43133 * 19 14 3 21 21 O 1.42099 * 109.34895 * 7.49207 * 19 14 3 22 22 H 1.09003 * 109.47365 * 293.86838 * 1 2 3 23 23 H 1.08998 * 109.47527 * 53.87273 * 1 2 3 24 24 H 1.09005 * 109.47116 * 173.86756 * 1 2 3 25 25 H 1.09000 * 109.47149 * 239.99737 * 2 1 3 26 26 H 1.09007 * 109.46741 * 119.99557 * 2 1 3 27 27 H 1.09003 * 109.46831 * 301.89189 * 5 3 2 28 28 H 1.09001 * 109.47064 * 181.89853 * 5 3 2 29 29 H 0.97003 * 120.00209 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.64745 * 333.04545 * 16 14 3 31 31 H 1.09001 * 109.63970 * 93.33942 * 16 14 3 32 32 H 1.08996 * 110.02732 * 287.89409 * 17 16 14 33 33 H 1.08995 * 110.06681 * 166.49556 * 17 16 14 34 34 H 1.09005 * 110.78881 * 199.29555 * 18 17 16 35 35 H 1.08993 * 110.95840 * 75.90715 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5956 1.9849 -0.8345 5 6 1.6504 2.1212 1.3148 6 6 2.3026 1.3989 2.4654 7 1 2.8653 0.4947 2.2861 8 6 2.1857 1.8955 3.7463 9 7 2.7594 1.2682 4.7497 10 14 1.2124 3.4595 4.0564 11 1 -0.2063 3.1141 4.3272 12 1 1.7808 4.1720 5.2288 13 1 1.2888 4.3355 2.8598 14 6 3.5632 1.4449 -0.1434 15 1 4.0190 0.8622 0.6571 16 6 4.1000 2.8900 -0.1292 17 6 5.3347 2.9669 -1.0442 18 6 4.9519 2.2536 -2.3666 19 16 4.0488 0.7728 -1.7740 20 8 4.9667 -0.2958 -1.5884 21 8 2.8865 0.5775 -2.5678 22 1 -0.3634 0.4158 0.9398 23 1 -0.3634 0.6059 -0.8300 24 1 -0.3633 -1.0218 -0.1098 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 0.5673 2.0896 1.4330 28 1 1.9843 3.1587 1.3009 29 1 2.6769 1.6174 5.6509 30 1 3.3306 3.5704 -0.4940 31 1 4.3793 3.1671 0.8873 32 1 6.1781 2.4588 -0.5766 33 1 5.5895 4.0080 -1.2419 34 1 5.8438 1.9657 -2.9231 35 1 4.3041 2.8836 -2.9760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:21 Heat of formation + Delta-G solvation = -93.098607 kcal Electronic energy + Delta-G solvation = -17197.387154 eV Core-core repulsion = 14514.988333 eV Total energy + Delta-G solvation = -2682.398821 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.66963 -36.69087 -35.76262 -34.75876 -32.37943 -30.18704 -28.37993 -25.99334 -23.61751 -22.79529 -20.71493 -19.16204 -18.40494 -17.10735 -16.39342 -16.19581 -15.19764 -14.45911 -14.28247 -14.14436 -13.68752 -13.50833 -12.86438 -12.52398 -12.47150 -12.12799 -11.78936 -11.73892 -11.67148 -11.58012 -11.35731 -10.84747 -10.73888 -10.62630 -10.51429 -10.27407 -10.06874 -9.84524 -9.74864 -9.19338 -8.96813 -8.57639 -6.07842 -4.05174 0.38300 2.88446 3.25846 3.34490 3.35428 3.87797 4.24412 4.40219 4.55568 4.87136 4.92804 4.99739 5.22263 5.26729 5.53227 5.60410 5.67994 5.77086 5.83932 6.00229 6.12664 6.23906 6.37139 6.42754 6.44924 6.58491 6.70290 6.89483 7.04236 7.18859 7.30173 7.75789 8.49428 8.96388 9.54490 11.04906 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.008729 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.503912 B = 3207.013054 C = 3636.605811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C -0.045 4.045 4 H 0.064 0.936 5 C -0.009 4.009 6 C -0.511 4.511 7 H 0.077 0.923 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.265 1.265 14 C -0.511 4.511 15 H 0.156 0.844 16 C -0.108 4.108 17 C -0.120 4.120 18 C -0.598 4.598 19 S 2.361 3.639 20 O -0.949 6.949 21 O -0.941 6.941 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.262 0.738 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 4.387 -11.792 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C -0.065 4.065 4 H 0.082 0.918 5 C -0.047 4.047 6 C -0.549 4.549 7 H 0.095 0.905 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.190 1.190 14 C -0.623 4.623 15 H 0.173 0.827 16 C -0.147 4.147 17 C -0.158 4.158 18 C -0.726 4.726 19 S 2.547 3.453 20 O -0.946 6.946 21 O -0.938 6.938 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.359 3.491 -12.079 12.793 hybrid contribution -0.235 1.561 0.690 1.723 sum 2.124 5.052 -11.389 12.639 Atomic orbital electron populations 1.21651 0.95742 1.00601 1.01860 1.21767 0.97051 0.96449 1.01698 1.20789 0.87935 0.97321 1.00407 0.91771 1.19696 0.96744 0.96023 0.92240 1.21103 1.32753 1.10976 0.90090 0.90516 1.25007 0.95256 0.96828 0.96301 1.69905 1.44541 1.39949 0.99710 0.86892 0.80678 0.84459 0.77869 1.20431 1.21614 1.18992 1.30215 1.06770 1.06966 1.18339 0.82673 1.21992 0.96193 0.93907 1.02622 1.22248 0.99516 1.02777 0.91303 1.30638 1.14226 1.20950 1.06833 1.10015 0.76391 0.78295 0.80577 1.93575 1.64357 1.50570 1.86077 1.93558 1.47150 1.85205 1.67907 0.91768 0.93437 0.93620 0.93469 0.89883 0.96179 0.95970 0.92799 0.90201 0.87855 0.89748 0.89121 0.85466 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.53 37.16 0.35 -2.09 16 2 C -0.13 -2.49 5.07 -26.74 -0.14 -2.63 16 3 C -0.04 -0.82 1.21 -90.62 -0.11 -0.93 16 4 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 5 C -0.01 -0.19 3.39 -27.88 -0.09 -0.28 16 6 C -0.51 -13.05 8.16 -34.44 -0.28 -13.34 16 7 H 0.08 2.10 5.98 -52.49 -0.31 1.79 16 8 C 0.07 1.83 5.47 -17.82 -0.10 1.73 16 9 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 10 Si 0.87 20.55 27.57 -169.99 -4.69 15.86 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -5.89 6.40 56.52 0.36 -5.53 16 14 C -0.51 -8.39 2.40 -26.12 -0.06 -8.46 16 15 H 0.16 2.81 6.77 -51.93 -0.35 2.46 16 16 C -0.11 -1.49 4.82 -25.67 -0.12 -1.61 16 17 C -0.12 -1.29 6.48 -25.19 -0.16 -1.46 16 18 C -0.60 -6.44 7.31 38.24 0.28 -6.16 16 19 S 2.36 35.96 5.30 -107.50 -0.57 35.39 16 20 O -0.95 -17.50 18.15 -57.73 -1.05 -18.55 16 21 O -0.94 -16.50 15.64 -57.73 -0.90 -17.40 16 22 H 0.06 1.16 6.85 -51.93 -0.36 0.81 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.86 5.94 -51.93 -0.31 0.55 16 26 H 0.08 1.70 6.49 -51.93 -0.34 1.37 16 27 H 0.02 0.44 6.32 -51.93 -0.33 0.11 16 28 H 0.02 0.46 5.88 -51.93 -0.31 0.16 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 30 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 31 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 280.19 15.07 4.22 4.22 Total: -1.00 -32.15 280.19 -7.89 -40.04 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.24 Total: 1.33 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: -0.43 Total: -35.22 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.77 Total: -25.68 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.95 Total: -35.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.69 Total: 15.86 kcal Atomic # 16 Polarization: 35.96 SS G_CDS: -0.57 Total: 35.39 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.15 -7.89 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.054 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds