Wall clock time and date at job start Mon Mar 30 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47152 * 2 1 4 4 H 1.09002 * 109.47166 * 305.70736 * 3 2 1 5 5 C 1.53004 * 109.47403 * 65.70649 * 3 2 1 6 6 C 1.50697 * 109.47144 * 61.89214 * 5 3 2 7 7 H 1.08001 * 120.00000 * 354.98898 * 6 5 3 8 8 C 1.37880 * 119.99946 * 174.70330 * 6 5 3 9 9 N 1.31508 * 119.99961 * 180.27675 * 8 6 5 10 10 Si 1.86797 * 119.99937 * 0.28260 * 8 6 5 11 11 H 1.48505 * 109.47053 * 89.99298 * 10 8 6 12 12 H 1.48501 * 109.47216 * 209.99239 * 10 8 6 13 13 H 1.48500 * 109.47178 * 329.99920 * 10 8 6 14 14 C 1.52997 * 109.47456 * 185.70528 * 3 2 1 15 15 H 1.09002 * 110.28281 * 302.88552 * 14 3 2 16 16 C 1.54167 * 110.32254 * 180.65702 * 14 3 2 17 17 C 1.53875 * 108.70668 * 213.18852 * 16 14 3 18 18 C 1.55050 * 106.62173 * 47.18604 * 17 16 14 19 19 S 1.82926 * 110.31808 * 64.99921 * 14 3 2 20 20 O 1.42097 * 109.35205 * 234.43133 * 19 14 3 21 21 O 1.42099 * 109.34895 * 7.49207 * 19 14 3 22 22 H 1.09003 * 109.47365 * 293.86838 * 1 2 3 23 23 H 1.08998 * 109.47527 * 53.87273 * 1 2 3 24 24 H 1.09005 * 109.47116 * 173.86756 * 1 2 3 25 25 H 1.09000 * 109.47149 * 239.99737 * 2 1 3 26 26 H 1.09007 * 109.46741 * 119.99557 * 2 1 3 27 27 H 1.09003 * 109.46831 * 301.89189 * 5 3 2 28 28 H 1.09001 * 109.47064 * 181.89853 * 5 3 2 29 29 H 0.97003 * 120.00209 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.64745 * 333.04545 * 16 14 3 31 31 H 1.09001 * 109.63970 * 93.33942 * 16 14 3 32 32 H 1.08996 * 110.02732 * 287.89409 * 17 16 14 33 33 H 1.08995 * 110.06681 * 166.49556 * 17 16 14 34 34 H 1.09005 * 110.78881 * 199.29555 * 18 17 16 35 35 H 1.08993 * 110.95840 * 75.90715 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5956 1.9849 -0.8345 5 6 1.6504 2.1212 1.3148 6 6 2.3026 1.3989 2.4654 7 1 2.8653 0.4947 2.2861 8 6 2.1857 1.8955 3.7463 9 7 2.7594 1.2682 4.7497 10 14 1.2124 3.4595 4.0564 11 1 -0.2063 3.1141 4.3272 12 1 1.7808 4.1720 5.2288 13 1 1.2888 4.3355 2.8598 14 6 3.5632 1.4449 -0.1434 15 1 4.0190 0.8622 0.6571 16 6 4.1000 2.8900 -0.1292 17 6 5.3347 2.9669 -1.0442 18 6 4.9519 2.2536 -2.3666 19 16 4.0488 0.7728 -1.7740 20 8 4.9667 -0.2958 -1.5884 21 8 2.8865 0.5775 -2.5678 22 1 -0.3634 0.4158 0.9398 23 1 -0.3634 0.6059 -0.8300 24 1 -0.3633 -1.0218 -0.1098 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8901 27 1 0.5673 2.0896 1.4330 28 1 1.9843 3.1587 1.3009 29 1 2.6769 1.6174 5.6509 30 1 3.3306 3.5704 -0.4940 31 1 4.3793 3.1671 0.8873 32 1 6.1781 2.4588 -0.5766 33 1 5.5895 4.0080 -1.2419 34 1 5.8438 1.9657 -2.9231 35 1 4.3041 2.8836 -2.9760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:21 Heat of formation + Delta-G solvation = -115.810849 kcal Electronic energy + Delta-G solvation = -17198.372031 eV Core-core repulsion = 14514.988333 eV Total energy + Delta-G solvation = -2683.383698 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.05328 -37.97274 -37.05115 -35.97587 -34.37588 -31.54612 -30.01204 -27.24621 -25.14639 -24.28414 -21.82658 -20.77774 -19.72726 -18.79762 -17.61534 -17.51917 -16.52679 -16.13774 -15.85274 -15.44644 -14.85141 -14.80049 -14.55735 -13.93290 -13.78731 -13.53045 -13.33999 -13.10087 -13.00870 -12.84354 -12.70784 -12.41100 -12.19671 -12.07889 -11.80959 -11.68857 -11.52286 -11.39918 -11.27182 -10.82234 -10.67409 -10.57230 -8.17695 -6.18046 -0.78806 1.39978 1.41447 1.51313 1.73850 2.42524 2.73902 3.08701 3.18356 3.52959 3.80884 3.83234 3.96104 4.18426 4.23841 4.34845 4.53300 4.61860 4.75117 4.78224 4.90473 4.95201 4.97948 5.12779 5.20662 5.27275 5.33083 5.35337 5.47041 5.53951 5.60957 5.81197 6.42577 6.89106 7.44217 8.98495 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026749 B = 0.008729 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.503912 B = 3207.013054 C = 3636.605811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C -0.045 4.045 4 H 0.091 0.909 5 C -0.007 4.007 6 C -0.498 4.498 7 H 0.040 0.960 8 C 0.002 3.998 9 N -0.957 5.957 10 Si 0.937 3.063 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.236 1.236 14 C -0.525 4.525 15 H 0.121 0.879 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.557 4.557 19 S 2.357 3.643 20 O -0.992 6.992 21 O -0.967 6.967 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.156 0.844 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 7.362 -14.374 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C -0.065 4.065 4 H 0.109 0.891 5 C -0.046 4.046 6 C -0.536 4.536 7 H 0.058 0.942 8 C -0.193 4.193 9 N -0.599 5.599 10 Si 0.762 3.238 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.159 1.159 14 C -0.636 4.636 15 H 0.140 0.860 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.690 4.690 19 S 2.548 3.452 20 O -0.989 6.989 21 O -0.965 6.965 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.219 6.430 -14.659 16.160 hybrid contribution -0.134 0.577 1.431 1.549 sum 2.086 7.007 -13.228 15.113 Atomic orbital electron populations 1.21656 0.94378 1.01803 1.01924 1.21781 0.98373 0.97036 1.00290 1.20762 0.89612 0.96556 0.99537 0.89068 1.19665 0.96315 0.96425 0.92152 1.21368 1.31111 1.09597 0.91502 0.94210 1.25889 0.96744 1.00507 0.96174 1.70077 1.47283 1.42324 1.00185 0.85862 0.78710 0.80703 0.78543 1.20362 1.22046 1.15862 1.30176 1.05385 1.09002 1.19082 0.86041 1.22061 0.98180 0.91959 1.02698 1.22333 0.97929 1.05077 0.90300 1.30428 1.14658 1.16633 1.07309 1.09864 0.76142 0.79669 0.79545 1.93519 1.64944 1.54027 1.86442 1.93512 1.48878 1.86475 1.67586 0.93040 0.91452 0.92430 0.93065 0.93152 0.95951 0.94480 0.93084 0.88203 0.89718 0.89604 0.85306 0.82575 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.53 71.98 0.69 -4.09 16 2 C -0.14 -5.29 5.07 30.59 0.16 -5.14 16 3 C -0.05 -1.63 1.21 -10.80 -0.01 -1.64 16 4 H 0.09 2.79 7.91 -2.39 -0.02 2.77 16 5 C -0.01 -0.31 3.39 29.85 0.10 -0.21 16 6 C -0.50 -26.25 8.16 25.60 0.21 -26.05 16 7 H 0.04 2.34 5.98 -2.91 -0.02 2.33 16 8 C 0.00 0.14 5.47 84.66 0.46 0.60 16 9 N -0.96 -58.56 13.96 21.45 0.30 -58.26 16 10 Si 0.94 42.20 27.57 68.60 1.89 44.09 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.24 -9.39 6.40 99.48 0.64 -8.75 16 14 C -0.53 -17.17 2.40 30.99 0.07 -17.10 16 15 H 0.12 4.75 6.77 -2.39 -0.02 4.74 16 16 C -0.11 -2.74 4.82 31.28 0.15 -2.59 16 17 C -0.12 -2.02 6.48 31.59 0.20 -1.81 16 18 C -0.56 -9.16 7.31 72.68 0.53 -8.63 16 19 S 2.36 68.81 5.30 -56.49 -0.30 68.51 16 20 O -0.99 -37.00 18.15 -127.47 -2.31 -39.31 16 21 O -0.97 -32.42 15.64 -127.47 -1.99 -34.42 16 22 H 0.05 1.85 6.85 -2.39 -0.02 1.84 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.05 1.91 5.94 -2.39 -0.01 1.89 16 26 H 0.05 2.22 6.49 -2.38 -0.02 2.21 16 27 H 0.02 0.94 6.32 -2.39 -0.02 0.92 16 28 H 0.04 1.46 5.88 -2.39 -0.01 1.44 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.10 2.08 7.69 -2.39 -0.02 2.06 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.13 1.40 8.14 -2.39 -0.02 1.39 16 34 H 0.16 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -73.06 280.19 1.14 -71.92 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.00 Total: 14.13 kcal Atomic # 6 Polarization: -69.21 SS G_CDS: 2.56 Total: -66.65 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.30 Total: -58.26 kcal Atomic # 8 Polarization: -69.43 SS G_CDS: -4.31 Total: -73.73 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.89 Total: 44.09 kcal Atomic # 16 Polarization: 68.81 SS G_CDS: -0.30 Total: 68.51 kcal Total: -73.06 1.14 -71.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.894 kcal (2) G-P(sol) polarization free energy of solvation -73.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds