Wall clock time and date at job start Mon Mar 30 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47229 * 2 1 4 4 H 1.09000 * 109.46902 * 305.68851 * 3 2 1 5 5 C 1.52998 * 109.46948 * 185.69064 * 3 2 1 6 6 C 1.50704 * 109.47294 * 65.64084 * 5 3 2 7 7 H 1.07999 * 119.99720 * 0.02562 * 6 5 3 8 8 C 1.37879 * 120.00017 * 179.97438 * 6 5 3 9 9 N 1.31516 * 119.99602 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99999 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46936 * 90.00083 * 10 8 6 12 12 H 1.48501 * 109.46696 * 209.99951 * 10 8 6 13 13 H 1.48494 * 109.47098 * 329.99935 * 10 8 6 14 14 C 1.53002 * 109.47370 * 65.69209 * 3 2 1 15 15 H 1.08999 * 110.27949 * 296.92662 * 14 3 2 16 16 C 1.54167 * 110.31862 * 174.70445 * 14 3 2 17 17 C 1.53876 * 108.69773 * 213.18715 * 16 14 3 18 18 C 1.55046 * 106.62725 * 47.18397 * 17 16 14 19 19 S 1.82917 * 110.31767 * 59.03790 * 14 3 2 20 20 O 1.42098 * 109.35151 * 234.42545 * 19 14 3 21 21 O 1.42098 * 109.35602 * 7.49940 * 19 14 3 22 22 H 1.08997 * 109.47299 * 294.69721 * 1 2 3 23 23 H 1.09002 * 109.47104 * 54.69863 * 1 2 3 24 24 H 1.09004 * 109.47219 * 174.69563 * 1 2 3 25 25 H 1.09004 * 109.47199 * 120.00348 * 2 1 3 26 26 H 1.09003 * 109.46762 * 239.99485 * 2 1 3 27 27 H 1.09010 * 109.47057 * 185.63638 * 5 3 2 28 28 H 1.08993 * 109.47656 * 305.63629 * 5 3 2 29 29 H 0.97004 * 119.99455 * 179.97438 * 9 8 6 30 30 H 1.08990 * 109.64548 * 333.03717 * 16 14 3 31 31 H 1.08995 * 109.64168 * 93.33754 * 16 14 3 32 32 H 1.08996 * 110.02922 * 287.88759 * 17 16 14 33 33 H 1.09007 * 110.02350 * 166.47254 * 17 16 14 34 34 H 1.08998 * 110.78865 * 199.29587 * 18 17 16 35 35 H 1.08999 * 110.95261 * 75.90758 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5959 1.9848 -0.8347 5 6 3.5633 1.4447 -0.1430 6 6 3.9415 0.9025 -1.4973 7 1 3.1723 0.5882 -2.1872 8 6 5.2695 0.8088 -1.8561 9 7 5.5996 0.3352 -3.0378 10 14 6.5999 1.3545 -0.6636 11 1 7.0051 0.2056 0.1855 12 1 7.7760 1.8462 -1.4254 13 1 6.0761 2.4455 0.1968 14 6 1.6502 2.1212 1.3146 15 1 0.5653 2.1754 1.4046 16 6 2.2672 3.5320 1.3921 17 6 2.6024 3.8437 2.8612 18 6 3.3402 2.6005 3.4214 19 16 2.3607 1.2121 2.7339 20 8 1.3227 0.8727 3.6430 21 8 3.2399 0.2037 2.2549 22 1 -0.3634 0.4294 0.9336 23 1 -0.3633 0.5939 -0.8387 24 1 -0.3634 -1.0233 -0.0950 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.9361 2.4641 -0.0428 28 1 4.0022 0.8193 0.6342 29 1 6.5339 0.2696 -3.2903 30 1 3.1770 3.5674 0.7932 31 1 1.5539 4.2650 1.0154 32 1 1.6856 4.0189 3.4242 33 1 3.2493 4.7192 2.9188 34 1 3.3115 2.5919 4.5110 35 1 4.3688 2.5632 3.0627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:26 Heat of formation + Delta-G solvation = -81.060804 kcal Electronic energy + Delta-G solvation = -17440.787124 eV Core-core repulsion = 14758.910301 eV Total energy + Delta-G solvation = -2681.876823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.92467 -36.72087 -35.84249 -34.56003 -32.47369 -30.18661 -28.79002 -25.83495 -23.82917 -22.13046 -21.02337 -19.78754 -18.36189 -17.13132 -16.33816 -16.20342 -15.08532 -14.52588 -14.38635 -14.15084 -13.70017 -13.51784 -13.20073 -12.78477 -12.47538 -12.14466 -12.05445 -11.82476 -11.73912 -11.60166 -11.23011 -11.00037 -10.85507 -10.62900 -10.44533 -10.18235 -10.10835 -9.72911 -9.49159 -9.29752 -8.95158 -8.43040 -5.98680 -3.94009 0.32526 2.81240 3.34999 3.41270 3.43425 3.81394 4.20329 4.46933 4.50415 4.75265 4.77942 4.92800 5.09779 5.35232 5.38647 5.55113 5.58365 5.62546 5.70287 5.80426 5.84615 5.94546 6.15720 6.29219 6.35281 6.38912 6.72555 6.84447 7.11216 7.24336 7.55371 7.87134 8.58076 9.06060 9.64308 11.14806 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.010448 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.938090 B = 2679.337638 C = 3188.399069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.143 4.143 3 C -0.041 4.041 4 H 0.082 0.918 5 C -0.054 4.054 6 C -0.505 4.505 7 H 0.074 0.926 8 C 0.066 3.934 9 N -0.906 5.906 10 Si 0.873 3.127 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.267 1.267 14 C -0.536 4.536 15 H 0.133 0.867 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.600 4.600 19 S 2.368 3.632 20 O -0.953 6.953 21 O -0.913 6.913 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.021 0.979 28 H 0.061 0.939 29 H 0.262 0.738 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 7.135 11.647 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.180 4.180 3 C -0.061 4.061 4 H 0.100 0.900 5 C -0.091 4.091 6 C -0.543 4.543 7 H 0.092 0.908 8 C -0.134 4.134 9 N -0.545 5.545 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.217 1.217 13 H -0.192 1.192 14 C -0.647 4.647 15 H 0.151 0.849 16 C -0.164 4.164 17 C -0.156 4.156 18 C -0.728 4.728 19 S 2.553 3.447 20 O -0.950 6.950 21 O -0.910 6.910 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.148 0.852 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.110 6.140 11.869 15.137 hybrid contribution 0.872 1.096 0.306 1.434 sum -6.238 7.237 12.175 15.476 Atomic orbital electron populations 1.21956 0.97327 1.01386 1.01020 1.21949 0.93818 0.97054 1.05196 1.20794 0.99544 0.94363 0.91363 0.89970 1.20432 0.90447 0.97569 1.00656 1.20975 0.93040 1.41579 0.98756 0.90831 1.24970 0.98601 0.94908 0.94930 1.69909 1.17606 1.46844 1.20174 0.86883 0.81715 0.79735 0.81631 1.19860 1.21653 1.19182 1.30355 1.10414 1.07941 1.16010 0.84885 1.22287 1.03767 0.93962 0.96365 1.22189 1.00442 0.97328 0.95678 1.30677 1.13898 1.17067 1.11203 1.09841 0.77690 0.78788 0.78377 1.93552 1.56075 1.82725 1.62680 1.93638 1.64640 1.53901 1.78787 0.93704 0.92583 0.92919 0.91395 0.88796 0.96132 0.92095 0.92872 0.87793 0.89284 0.90105 0.88862 0.85240 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.56 37.16 0.36 -2.07 16 2 C -0.14 -2.69 5.06 -26.73 -0.14 -2.83 16 3 C -0.04 -0.76 1.69 -90.62 -0.15 -0.92 16 4 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 5 C -0.05 -1.22 2.96 -27.88 -0.08 -1.31 16 6 C -0.51 -13.99 8.88 -34.44 -0.31 -14.29 16 7 H 0.07 2.17 7.37 -52.49 -0.39 1.78 16 8 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -27.86 13.96 55.43 0.77 -27.08 16 10 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 14 C -0.54 -7.82 2.76 -26.12 -0.07 -7.89 16 15 H 0.13 1.63 6.91 -51.93 -0.36 1.27 16 16 C -0.13 -1.54 5.79 -25.67 -0.15 -1.69 16 17 C -0.12 -1.21 6.48 -25.19 -0.16 -1.37 16 18 C -0.60 -7.17 7.31 38.24 0.28 -6.89 16 19 S 2.37 37.61 5.05 -107.50 -0.54 37.06 16 20 O -0.95 -16.72 18.15 -57.73 -1.05 -17.77 16 21 O -0.91 -18.18 12.57 -57.73 -0.73 -18.90 16 22 H 0.04 0.61 6.93 -51.93 -0.36 0.25 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.33 5.29 -51.93 -0.27 1.05 16 26 H 0.09 1.98 6.85 -51.93 -0.36 1.63 16 27 H 0.02 0.45 4.69 -51.92 -0.24 0.20 16 28 H 0.06 1.44 4.47 -51.93 -0.23 1.21 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.10 1.46 5.30 -51.93 -0.28 1.18 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 275.16 15.07 4.15 4.15 Total: -1.00 -33.48 275.16 -7.62 -41.11 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.04 Total: 1.84 kcal Atomic # 6 Polarization: -36.91 SS G_CDS: -0.52 Total: -37.43 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.77 Total: -36.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: 37.61 SS G_CDS: -0.54 Total: 37.06 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -33.48 -7.62 -41.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.955 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds