Wall clock time and date at job start Mon Mar 30 2020 03:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47229 * 2 1 4 4 H 1.09000 * 109.46902 * 305.68851 * 3 2 1 5 5 C 1.52998 * 109.46948 * 185.69064 * 3 2 1 6 6 C 1.50704 * 109.47294 * 65.64084 * 5 3 2 7 7 H 1.07999 * 119.99720 * 0.02562 * 6 5 3 8 8 C 1.37879 * 120.00017 * 179.97438 * 6 5 3 9 9 N 1.31516 * 119.99602 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99999 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46936 * 90.00083 * 10 8 6 12 12 H 1.48501 * 109.46696 * 209.99951 * 10 8 6 13 13 H 1.48494 * 109.47098 * 329.99935 * 10 8 6 14 14 C 1.53002 * 109.47370 * 65.69209 * 3 2 1 15 15 H 1.08999 * 110.27949 * 296.92662 * 14 3 2 16 16 C 1.54167 * 110.31862 * 174.70445 * 14 3 2 17 17 C 1.53876 * 108.69773 * 213.18715 * 16 14 3 18 18 C 1.55046 * 106.62725 * 47.18397 * 17 16 14 19 19 S 1.82917 * 110.31767 * 59.03790 * 14 3 2 20 20 O 1.42098 * 109.35151 * 234.42545 * 19 14 3 21 21 O 1.42098 * 109.35602 * 7.49940 * 19 14 3 22 22 H 1.08997 * 109.47299 * 294.69721 * 1 2 3 23 23 H 1.09002 * 109.47104 * 54.69863 * 1 2 3 24 24 H 1.09004 * 109.47219 * 174.69563 * 1 2 3 25 25 H 1.09004 * 109.47199 * 120.00348 * 2 1 3 26 26 H 1.09003 * 109.46762 * 239.99485 * 2 1 3 27 27 H 1.09010 * 109.47057 * 185.63638 * 5 3 2 28 28 H 1.08993 * 109.47656 * 305.63629 * 5 3 2 29 29 H 0.97004 * 119.99455 * 179.97438 * 9 8 6 30 30 H 1.08990 * 109.64548 * 333.03717 * 16 14 3 31 31 H 1.08995 * 109.64168 * 93.33754 * 16 14 3 32 32 H 1.08996 * 110.02922 * 287.88759 * 17 16 14 33 33 H 1.09007 * 110.02350 * 166.47254 * 17 16 14 34 34 H 1.08998 * 110.78865 * 199.29587 * 18 17 16 35 35 H 1.08999 * 110.95261 * 75.90758 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5959 1.9848 -0.8347 5 6 3.5633 1.4447 -0.1430 6 6 3.9415 0.9025 -1.4973 7 1 3.1723 0.5882 -2.1872 8 6 5.2695 0.8088 -1.8561 9 7 5.5996 0.3352 -3.0378 10 14 6.5999 1.3545 -0.6636 11 1 7.0051 0.2056 0.1855 12 1 7.7760 1.8462 -1.4254 13 1 6.0761 2.4455 0.1968 14 6 1.6502 2.1212 1.3146 15 1 0.5653 2.1754 1.4046 16 6 2.2672 3.5320 1.3921 17 6 2.6024 3.8437 2.8612 18 6 3.3402 2.6005 3.4214 19 16 2.3607 1.2121 2.7339 20 8 1.3227 0.8727 3.6430 21 8 3.2399 0.2037 2.2549 22 1 -0.3634 0.4294 0.9336 23 1 -0.3633 0.5939 -0.8387 24 1 -0.3634 -1.0233 -0.0950 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.9361 2.4641 -0.0428 28 1 4.0022 0.8193 0.6342 29 1 6.5339 0.2696 -3.2903 30 1 3.1770 3.5674 0.7932 31 1 1.5539 4.2650 1.0154 32 1 1.6856 4.0189 3.4242 33 1 3.2493 4.7192 2.9188 34 1 3.3115 2.5919 4.5110 35 1 4.3688 2.5632 3.0627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:26 Heat of formation + Delta-G solvation = -105.261020 kcal Electronic energy + Delta-G solvation = -17441.836524 eV Core-core repulsion = 14758.910301 eV Total energy + Delta-G solvation = -2682.926223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.25975 -37.95200 -37.09045 -35.76908 -34.54477 -31.64433 -30.27410 -27.13374 -25.19051 -23.76858 -22.05911 -21.29764 -19.63268 -19.00726 -17.58371 -17.49669 -16.40829 -16.17427 -15.64745 -15.40893 -15.18708 -14.72486 -14.61993 -14.30704 -14.11898 -13.47948 -13.21973 -13.16200 -12.91835 -12.87041 -12.65487 -12.54252 -12.32487 -11.86566 -11.80529 -11.66104 -11.60791 -11.43997 -11.08834 -10.90159 -10.70288 -10.46008 -8.21212 -6.20063 -0.81776 1.35159 1.41767 1.48069 1.69878 2.41870 2.70691 3.04609 3.16681 3.49607 3.73882 3.81669 3.91477 4.10416 4.23702 4.29391 4.41360 4.47045 4.68873 4.72502 4.89618 4.91055 4.99856 5.06756 5.12600 5.13952 5.27415 5.32268 5.52853 5.58701 5.72974 5.87431 6.37377 6.86657 7.40921 8.95676 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.010448 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.938090 B = 2679.337638 C = 3188.399069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C -0.039 4.039 4 H 0.082 0.918 5 C -0.056 4.056 6 C -0.506 4.506 7 H 0.035 0.965 8 C -0.001 4.001 9 N -0.958 5.958 10 Si 0.930 3.070 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.227 1.227 14 C -0.527 4.527 15 H 0.161 0.839 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.577 4.577 19 S 2.342 3.658 20 O -0.979 6.979 21 O -0.968 6.968 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.262 0.738 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 10.270 14.298 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C -0.058 4.058 4 H 0.100 0.900 5 C -0.093 4.093 6 C -0.544 4.544 7 H 0.053 0.947 8 C -0.196 4.196 9 N -0.600 5.600 10 Si 0.754 3.246 11 H -0.205 1.205 12 H -0.212 1.212 13 H -0.149 1.149 14 C -0.639 4.639 15 H 0.179 0.821 16 C -0.166 4.166 17 C -0.154 4.154 18 C -0.710 4.710 19 S 2.533 3.467 20 O -0.976 6.976 21 O -0.965 6.965 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.126 0.874 33 H 0.141 0.859 34 H 0.177 0.823 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.748 9.249 14.527 18.884 hybrid contribution 0.996 0.106 -0.554 1.145 sum -6.752 9.355 13.973 18.120 Atomic orbital electron populations 1.21919 0.94230 1.02465 1.02576 1.21927 0.96683 0.97251 1.02713 1.20595 0.96698 0.94461 0.94052 0.89982 1.20435 0.93748 0.98076 0.97063 1.21384 0.92200 1.40427 1.00428 0.94700 1.25927 1.01458 0.95463 0.96752 1.70074 1.18088 1.49218 1.22593 0.85945 0.78626 0.80337 0.79699 1.20454 1.21196 1.14919 1.30216 1.12337 1.08882 1.12430 0.82089 1.22369 1.03472 0.92694 0.98018 1.22358 1.02073 0.96993 0.93943 1.30547 1.13014 1.14539 1.12887 1.10255 0.77747 0.79980 0.78715 1.93515 1.57038 1.84004 1.63015 1.93563 1.65700 1.57365 1.79873 0.91645 0.91443 0.92202 0.92460 0.92770 0.93987 0.92655 0.92955 0.89613 0.86273 0.87398 0.85928 0.82287 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 9.56 71.98 0.69 -3.89 16 2 C -0.15 -5.75 5.06 30.59 0.15 -5.60 16 3 C -0.04 -1.41 1.69 -10.80 -0.02 -1.43 16 4 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 5 C -0.06 -2.53 2.96 29.85 0.09 -2.44 16 6 C -0.51 -29.03 8.88 25.60 0.23 -28.80 16 7 H 0.03 2.19 7.37 -2.91 -0.02 2.17 16 8 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 9 N -0.96 -61.37 13.96 21.45 0.30 -61.07 16 10 Si 0.93 44.56 27.47 68.60 1.88 46.45 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.23 -9.28 6.54 99.48 0.65 -8.62 16 14 C -0.53 -13.83 2.76 30.99 0.09 -13.74 16 15 H 0.16 3.31 6.91 -2.39 -0.02 3.29 16 16 C -0.13 -2.51 5.79 31.28 0.18 -2.33 16 17 C -0.12 -1.65 6.48 31.59 0.20 -1.45 16 18 C -0.58 -11.09 7.31 72.68 0.53 -10.56 16 19 S 2.34 69.88 5.05 -56.49 -0.29 69.59 16 20 O -0.98 -32.62 18.15 -127.47 -2.31 -34.93 16 21 O -0.97 -38.79 12.57 -127.47 -1.60 -40.39 16 22 H 0.06 1.66 6.93 -2.39 -0.02 1.64 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.06 2.33 5.29 -2.38 -0.01 2.32 16 26 H 0.05 2.47 6.85 -2.39 -0.02 2.45 16 27 H 0.04 1.72 4.69 -2.38 -0.01 1.71 16 28 H 0.06 2.62 4.47 -2.39 -0.01 2.61 16 29 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.09 2.04 5.30 -2.39 -0.01 2.03 16 31 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -77.52 275.16 1.61 -75.91 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.02 Total: 14.27 kcal Atomic # 6 Polarization: -72.43 SS G_CDS: 2.61 Total: -69.82 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.30 Total: -61.07 kcal Atomic # 8 Polarization: -71.41 SS G_CDS: -3.91 Total: -75.32 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 16 Polarization: 69.88 SS G_CDS: -0.29 Total: 69.59 kcal Total: -77.52 1.61 -75.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.352 kcal (2) G-P(sol) polarization free energy of solvation -77.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds