Wall clock time and date at job start Mon Mar 30 2020 03:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00261 * 2 1 4 4 H 1.48508 * 109.46843 * 94.81792 * 3 2 1 5 5 H 1.48500 * 109.47273 * 214.81657 * 3 2 1 6 6 H 1.48494 * 109.47517 * 334.82012 * 3 2 1 7 7 C 1.37876 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00078 * 1.93607 * 7 2 1 9 9 C 1.50696 * 119.99924 * 181.94217 * 7 2 1 10 10 O 1.42898 * 109.54638 * 24.46757 * 9 7 2 11 11 C 1.51015 * 109.54729 * 144.65702 * 9 7 2 12 12 C 1.38552 * 118.29912 * 313.16459 * 11 9 7 13 13 C 1.38056 * 120.40894 * 180.55505 * 12 11 9 14 14 C 1.38288 * 119.84463 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.98967 * 359.78883 * 14 13 12 16 16 C 1.38261 * 121.72884 * 133.30990 * 11 9 7 17 17 O 1.35743 * 122.95817 * 358.40425 * 16 11 9 18 18 C 1.42835 * 118.79271 * 19.64495 * 17 16 11 19 19 C 1.52967 * 109.54720 * 264.28543 * 9 7 2 20 20 C 1.52623 * 118.19397 * 53.29666 * 19 9 7 21 21 C 1.52567 * 118.31952 * 343.87556 * 19 9 7 22 22 H 0.97005 * 119.99670 * 359.97438 * 1 2 3 23 23 H 0.96707 * 113.99801 * 62.25147 * 10 9 7 24 24 H 1.07998 * 119.79593 * 0.53445 * 12 11 9 25 25 H 1.08002 * 120.07464 * 180.02562 * 13 12 11 26 26 H 1.08003 * 120.00284 * 179.76832 * 14 13 12 27 27 H 1.08000 * 119.80181 * 179.97438 * 15 14 13 28 28 H 1.09004 * 109.78781 * 73.44732 * 18 17 16 29 29 H 1.08999 * 109.78777 * 194.22799 * 18 17 16 30 30 H 1.08998 * 117.51160 * 359.19257 * 20 19 9 31 31 H 1.08996 * 117.51100 * 144.28843 * 20 19 9 32 32 H 1.08998 * 117.50486 * 215.52299 * 21 19 9 33 33 H 1.08996 * 117.50549 * 0.54869 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5986 1.9875 1.3952 5 1 3.4922 1.4716 -0.7994 6 1 1.3996 2.6799 -0.5956 7 6 2.0045 -1.1941 -0.0005 8 1 1.4648 -2.1292 -0.0326 9 6 3.5108 -1.1946 0.0437 10 8 3.9721 0.0211 0.6365 11 6 3.9919 -2.3697 0.8611 12 6 3.3889 -2.6091 2.0853 13 6 3.8024 -3.6646 2.8734 14 6 4.8249 -4.4883 2.4395 15 6 5.4258 -4.2570 1.2204 16 6 5.0085 -3.1958 0.4186 17 8 5.6213 -3.0345 -0.7819 18 6 5.5279 -1.7689 -1.4375 19 6 4.0645 -1.3133 -1.3773 20 6 3.5790 -0.3164 -2.4260 21 6 3.1227 -1.7764 -2.4847 22 1 -0.4850 0.8401 0.0004 23 1 3.6891 0.1439 1.5530 24 1 2.5908 -1.9659 2.4254 25 1 3.3283 -3.8465 3.8266 26 1 5.1529 -5.3124 3.0556 27 1 6.2244 -4.9019 0.8846 28 1 6.1607 -1.0420 -0.9283 29 1 5.8419 -1.8676 -2.4766 30 1 2.8469 0.4277 -2.1124 31 1 4.2977 0.0169 -3.1746 32 1 3.5412 -2.4034 -3.2719 33 1 2.0905 -1.9932 -2.2097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260499326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:46 Heat of formation + Delta-G solvation = -19.811517 kcal Electronic energy + Delta-G solvation = -18719.250574 eV Core-core repulsion = 15904.585768 eV Total energy + Delta-G solvation = -2814.664806 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33735 -37.48830 -36.90161 -34.92999 -32.30428 -30.84235 -29.75603 -27.25118 -26.61560 -23.34510 -22.08042 -21.65991 -21.13927 -18.15415 -17.59013 -17.05191 -16.03629 -15.75808 -15.38149 -14.92791 -14.45204 -14.14877 -13.43588 -13.25711 -12.97055 -12.57414 -12.31004 -12.04538 -11.88188 -11.81153 -11.06553 -10.95825 -10.60981 -10.48628 -10.22449 -9.99558 -9.46096 -9.30402 -9.06107 -8.61586 -8.25148 -8.21429 -7.60803 -6.20781 -4.32630 1.90227 1.98426 3.37130 3.51985 3.71940 3.75817 4.29121 4.45767 4.59770 5.00136 5.14117 5.26253 5.40380 5.47352 5.49729 5.64657 5.78619 5.81721 5.93212 6.05320 6.19206 6.24541 6.36069 6.36308 6.57253 6.76184 6.83153 6.87595 7.04724 7.16055 7.30351 7.35572 7.45786 8.01039 8.07722 8.53451 8.79008 9.37950 10.87298 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.011891 C = 0.009522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.797414 B = 2354.082111 C = 2939.713859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.945 3.055 4 H -0.304 1.304 5 H -0.251 1.251 6 H -0.333 1.333 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.296 3.704 10 O -0.550 6.550 11 C -0.148 4.148 12 C -0.059 4.059 13 C -0.167 4.167 14 C -0.099 4.099 15 C -0.166 4.166 16 C 0.136 3.864 17 O -0.322 6.322 18 C 0.101 3.899 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.142 4.142 22 H 0.266 0.734 23 H 0.368 0.632 24 H 0.132 0.868 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 -3.860 0.875 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.783 3.217 4 H -0.233 1.233 5 H -0.177 1.177 6 H -0.266 1.266 7 C -0.580 4.580 8 H 0.100 0.900 9 C 0.257 3.743 10 O -0.359 6.359 11 C -0.149 4.149 12 C -0.077 4.077 13 C -0.185 4.185 14 C -0.117 4.117 15 C -0.185 4.185 16 C 0.091 3.909 17 O -0.236 6.236 18 C 0.026 3.974 19 C -0.157 4.157 20 C -0.193 4.193 21 C -0.179 4.179 22 H 0.076 0.924 23 H 0.217 0.783 24 H 0.149 0.851 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.228 -3.859 0.173 10.004 hybrid contribution -0.066 0.903 0.634 1.105 sum 9.161 -2.956 0.807 9.660 Atomic orbital electron populations 1.69952 1.06732 1.27750 1.47708 1.25206 0.95043 1.00382 0.93017 0.85834 0.78134 0.79591 0.78110 1.23309 1.17746 1.26573 1.21085 0.87694 0.95210 1.54005 0.90008 1.17442 0.93424 0.77928 0.85473 1.86333 1.78335 1.40861 1.30352 1.20869 0.95848 1.00615 0.97615 1.21095 0.97363 0.96469 0.92777 1.20987 0.99502 0.97424 1.00620 1.20734 0.96557 0.99099 0.95309 1.20517 1.03275 0.99784 0.94921 1.18763 0.91665 0.95388 0.85100 1.85760 1.71285 1.35177 1.31383 1.22504 0.95301 0.83036 0.96556 1.22030 0.93577 1.06515 0.93583 1.22866 1.03164 0.93640 0.99611 1.22961 1.01247 0.96168 0.97494 0.92439 0.78334 0.85063 0.86599 0.86415 0.86265 0.91887 0.88659 0.87811 0.90277 0.90400 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 2 C 0.07 1.82 5.21 -17.82 -0.09 1.73 16 3 Si 0.94 22.76 22.07 -169.99 -3.75 19.00 16 4 H -0.30 -7.17 6.94 56.52 0.39 -6.78 16 5 H -0.25 -5.89 4.78 56.52 0.27 -5.62 16 6 H -0.33 -8.39 7.11 56.52 0.40 -7.99 16 7 C -0.54 -13.98 5.41 -34.44 -0.19 -14.17 16 8 H 0.08 2.37 8.04 -52.48 -0.42 1.94 16 9 C 0.30 6.68 0.61 -92.79 -0.06 6.62 16 10 O -0.55 -12.22 7.87 -35.23 -0.28 -12.49 16 11 C -0.15 -3.13 5.04 -104.34 -0.53 -3.66 16 12 C -0.06 -1.16 8.91 -39.53 -0.35 -1.51 16 13 C -0.17 -2.79 10.05 -39.63 -0.40 -3.19 16 14 C -0.10 -1.54 10.03 -39.70 -0.40 -1.94 16 15 C -0.17 -2.86 9.91 -39.28 -0.39 -3.25 16 16 C 0.14 2.71 6.47 -39.14 -0.25 2.46 16 17 O -0.32 -6.24 10.19 -18.94 -0.19 -6.43 16 18 C 0.10 1.83 6.83 37.36 0.26 2.09 16 19 C -0.16 -3.25 1.77 -154.74 -0.27 -3.52 16 20 C -0.16 -3.14 8.55 -26.89 -0.23 -3.37 16 21 C -0.14 -2.85 9.50 -26.91 -0.26 -3.11 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.37 7.54 7.63 45.56 0.35 7.89 16 24 H 0.13 2.65 7.51 -52.49 -0.39 2.25 16 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 27 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.45 8.13 -51.93 -0.42 1.03 16 30 H 0.10 2.34 4.07 -51.93 -0.21 2.13 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.12 2.68 6.68 -51.93 -0.35 2.33 16 LS Contribution 260.18 15.07 3.92 3.92 Total: -1.00 -29.35 260.18 -5.95 -35.30 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -3.26 Total: 10.32 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -3.16 Total: -24.82 kcal Atomic # 7 Polarization: -25.57 SS G_CDS: 0.77 Total: -24.80 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.47 Total: -18.93 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -3.75 Total: 19.00 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.35 -5.95 -35.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.486 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds