Wall clock time and date at job start Mon Mar 30 2020 03:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00261 * 2 1 4 4 H 1.48508 * 109.46843 * 94.81792 * 3 2 1 5 5 H 1.48500 * 109.47273 * 214.81657 * 3 2 1 6 6 H 1.48494 * 109.47517 * 334.82012 * 3 2 1 7 7 C 1.37876 * 119.99541 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00078 * 1.93607 * 7 2 1 9 9 C 1.50696 * 119.99924 * 181.94217 * 7 2 1 10 10 O 1.42898 * 109.54638 * 24.46757 * 9 7 2 11 11 C 1.51015 * 109.54729 * 144.65702 * 9 7 2 12 12 C 1.38552 * 118.29912 * 313.16459 * 11 9 7 13 13 C 1.38056 * 120.40894 * 180.55505 * 12 11 9 14 14 C 1.38288 * 119.84463 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.98967 * 359.78883 * 14 13 12 16 16 C 1.38261 * 121.72884 * 133.30990 * 11 9 7 17 17 O 1.35743 * 122.95817 * 358.40425 * 16 11 9 18 18 C 1.42835 * 118.79271 * 19.64495 * 17 16 11 19 19 C 1.52967 * 109.54720 * 264.28543 * 9 7 2 20 20 C 1.52623 * 118.19397 * 53.29666 * 19 9 7 21 21 C 1.52567 * 118.31952 * 343.87556 * 19 9 7 22 22 H 0.97005 * 119.99670 * 359.97438 * 1 2 3 23 23 H 0.96707 * 113.99801 * 62.25147 * 10 9 7 24 24 H 1.07998 * 119.79593 * 0.53445 * 12 11 9 25 25 H 1.08002 * 120.07464 * 180.02562 * 13 12 11 26 26 H 1.08003 * 120.00284 * 179.76832 * 14 13 12 27 27 H 1.08000 * 119.80181 * 179.97438 * 15 14 13 28 28 H 1.09004 * 109.78781 * 73.44732 * 18 17 16 29 29 H 1.08999 * 109.78777 * 194.22799 * 18 17 16 30 30 H 1.08998 * 117.51160 * 359.19257 * 20 19 9 31 31 H 1.08996 * 117.51100 * 144.28843 * 20 19 9 32 32 H 1.08998 * 117.50486 * 215.52299 * 21 19 9 33 33 H 1.08996 * 117.50549 * 0.54869 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5986 1.9875 1.3952 5 1 3.4922 1.4716 -0.7994 6 1 1.3996 2.6799 -0.5956 7 6 2.0045 -1.1941 -0.0005 8 1 1.4648 -2.1292 -0.0326 9 6 3.5108 -1.1946 0.0437 10 8 3.9721 0.0211 0.6365 11 6 3.9919 -2.3697 0.8611 12 6 3.3889 -2.6091 2.0853 13 6 3.8024 -3.6646 2.8734 14 6 4.8249 -4.4883 2.4395 15 6 5.4258 -4.2570 1.2204 16 6 5.0085 -3.1958 0.4186 17 8 5.6213 -3.0345 -0.7819 18 6 5.5279 -1.7689 -1.4375 19 6 4.0645 -1.3133 -1.3773 20 6 3.5790 -0.3164 -2.4260 21 6 3.1227 -1.7764 -2.4847 22 1 -0.4850 0.8401 0.0004 23 1 3.6891 0.1439 1.5530 24 1 2.5908 -1.9659 2.4254 25 1 3.3283 -3.8465 3.8266 26 1 5.1529 -5.3124 3.0556 27 1 6.2244 -4.9019 0.8846 28 1 6.1607 -1.0420 -0.9283 29 1 5.8419 -1.8676 -2.4766 30 1 2.8469 0.4277 -2.1124 31 1 4.2977 0.0169 -3.1746 32 1 3.5412 -2.4034 -3.2719 33 1 2.0905 -1.9932 -2.2097 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260499326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:46 Heat of formation + Delta-G solvation = -40.370274 kcal Electronic energy + Delta-G solvation = -18720.142069 eV Core-core repulsion = 15904.585768 eV Total energy + Delta-G solvation = -2815.556301 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85513 -39.01329 -38.41746 -36.56350 -34.38271 -32.35953 -31.16392 -28.80345 -28.39128 -25.01713 -23.62433 -23.21804 -22.65202 -19.73230 -19.34986 -18.71160 -17.59278 -17.36340 -17.18946 -16.52364 -15.95734 -15.69844 -15.03514 -14.71629 -14.54138 -14.32422 -14.06788 -13.74961 -13.43399 -13.30194 -12.79559 -12.64420 -12.10622 -12.03492 -11.98280 -11.70095 -11.12926 -11.08007 -10.81317 -10.57961 -10.04213 -9.66916 -9.03224 -8.33401 -6.45427 0.49336 0.57455 1.40984 1.52451 1.77527 2.33847 2.42891 2.81639 2.98953 3.05685 3.53055 3.73526 3.90341 4.02802 4.11027 4.23423 4.39951 4.43159 4.56666 4.62689 4.67365 4.74898 4.81968 4.95136 5.11869 5.16883 5.23886 5.42386 5.47809 5.54523 5.66298 5.83214 5.97802 6.04066 6.53896 6.59613 6.75672 7.28497 8.78926 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.024581 B = 0.011891 C = 0.009522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.797414 B = 2354.082111 C = 2939.713859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 1.001 2.999 4 H -0.296 1.296 5 H -0.237 1.237 6 H -0.350 1.350 7 C -0.522 4.522 8 H 0.036 0.964 9 C 0.293 3.707 10 O -0.551 6.551 11 C -0.178 4.178 12 C -0.082 4.082 13 C -0.163 4.163 14 C -0.085 4.085 15 C -0.165 4.165 16 C 0.117 3.883 17 O -0.324 6.324 18 C 0.105 3.895 19 C -0.169 4.169 20 C -0.156 4.156 21 C -0.142 4.142 22 H 0.264 0.736 23 H 0.372 0.628 24 H 0.110 0.890 25 H 0.144 0.856 26 H 0.163 0.837 27 H 0.147 0.853 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.129 -5.015 0.994 13.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.838 3.162 4 H -0.224 1.224 5 H -0.163 1.163 6 H -0.284 1.284 7 C -0.559 4.559 8 H 0.054 0.946 9 C 0.254 3.746 10 O -0.361 6.361 11 C -0.180 4.180 12 C -0.100 4.100 13 C -0.181 4.181 14 C -0.103 4.103 15 C -0.183 4.183 16 C 0.072 3.928 17 O -0.238 6.238 18 C 0.031 3.969 19 C -0.170 4.170 20 C -0.192 4.192 21 C -0.178 4.178 22 H 0.073 0.927 23 H 0.222 0.778 24 H 0.128 0.872 25 H 0.161 0.839 26 H 0.180 0.820 27 H 0.164 0.836 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.355 -5.030 0.304 13.343 hybrid contribution -1.060 1.112 0.659 1.672 sum 11.295 -3.918 0.963 11.994 Atomic orbital electron populations 1.70077 1.08400 1.28194 1.50780 1.25850 0.95357 1.03267 0.93059 0.84905 0.77082 0.75779 0.78452 1.22412 1.16290 1.28445 1.21086 0.89948 0.92969 1.51928 0.94619 1.17367 0.91075 0.78905 0.87297 1.86271 1.77974 1.41010 1.30820 1.20759 0.97732 1.01157 0.98319 1.21082 0.97606 0.97920 0.93414 1.21319 0.99526 0.96119 1.01133 1.21237 0.94871 0.99218 0.94934 1.20937 1.03591 0.98894 0.94916 1.19031 0.91862 0.96158 0.85790 1.85752 1.71135 1.35667 1.31275 1.22651 0.92940 0.82776 0.98578 1.22098 0.95572 1.07152 0.92161 1.22927 1.03239 0.92757 1.00294 1.22864 0.99341 0.97162 0.98480 0.92698 0.77825 0.87200 0.83855 0.81963 0.83567 0.91532 0.85006 0.90653 0.86324 0.86936 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 13.96 21.45 0.30 -56.65 16 2 C 0.02 1.31 5.21 84.65 0.44 1.76 16 3 Si 1.00 48.17 22.07 68.60 1.51 49.68 16 4 H -0.30 -13.62 6.94 99.48 0.69 -12.93 16 5 H -0.24 -10.78 4.78 99.48 0.48 -10.31 16 6 H -0.35 -17.72 7.11 99.48 0.71 -17.01 16 7 C -0.52 -28.14 5.41 25.60 0.14 -28.01 16 8 H 0.04 2.21 8.04 -2.91 -0.02 2.19 16 9 C 0.29 13.27 0.61 -12.20 -0.01 13.26 16 10 O -0.55 -24.25 7.87 -148.98 -1.17 -25.43 16 11 C -0.18 -7.50 5.04 -19.68 -0.10 -7.60 16 12 C -0.08 -3.22 8.91 22.30 0.20 -3.02 16 13 C -0.16 -5.06 10.05 22.24 0.22 -4.83 16 14 C -0.08 -2.30 10.03 22.19 0.22 -2.08 16 15 C -0.16 -5.07 9.91 22.46 0.22 -4.85 16 16 C 0.12 4.41 6.47 22.55 0.15 4.56 16 17 O -0.32 -11.64 10.19 -90.68 -0.92 -12.56 16 18 C 0.10 3.48 6.83 72.11 0.49 3.97 16 19 C -0.17 -6.81 1.77 -52.33 -0.09 -6.90 16 20 C -0.16 -6.02 8.55 30.49 0.26 -5.76 16 21 C -0.14 -5.60 9.50 30.48 0.29 -5.31 16 22 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 23 H 0.37 15.33 7.63 -74.05 -0.57 14.76 16 24 H 0.11 4.66 7.51 -2.91 -0.02 4.64 16 25 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 26 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 27 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.13 3.38 8.13 -2.39 -0.02 3.37 16 30 H 0.08 3.36 4.07 -2.39 -0.01 3.36 16 31 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.08 3.68 6.68 -2.39 -0.02 3.66 16 Total: -1.00 -66.43 260.18 2.47 -63.95 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.32 Total: 25.81 kcal Atomic # 6 Polarization: -47.24 SS G_CDS: 2.44 Total: -44.81 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.30 Total: -56.65 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -2.10 Total: -37.99 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.51 Total: 49.68 kcal Total: -66.43 2.47 -63.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.583 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds