Wall clock time and date at job start Mon Mar 30 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47293 * 264.82811 * 3 2 1 5 5 H 1.48501 * 109.46898 * 24.83082 * 3 2 1 6 6 H 1.48503 * 109.47018 * 144.82736 * 3 2 1 7 7 C 1.37877 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00224 * 358.54982 * 7 2 1 9 9 C 1.50708 * 119.99632 * 178.54685 * 7 2 1 10 10 O 1.42892 * 109.54560 * 335.45231 * 9 7 2 11 11 C 1.51013 * 109.54496 * 215.26576 * 9 7 2 12 12 C 1.38554 * 118.29440 * 47.15754 * 11 9 7 13 13 C 1.38068 * 120.39868 * 179.56763 * 12 11 9 14 14 C 1.38294 * 119.85762 * 359.95646 * 13 12 11 15 15 C 1.37864 * 119.97293 * 0.19113 * 14 13 12 16 16 C 1.38266 * 121.72608 * 227.03982 * 11 9 7 17 17 O 1.35747 * 122.98067 * 0.95163 * 16 11 9 18 18 C 1.42836 * 118.80770 * 340.88490 * 17 16 11 19 19 C 1.52967 * 109.54628 * 95.73361 * 9 7 2 20 20 C 1.52565 * 118.31248 * 16.16609 * 19 9 7 21 21 C 1.52607 * 118.22314 * 306.72970 * 19 9 7 22 22 H 0.96993 * 120.00118 * 0.02562 * 1 2 3 23 23 H 0.96701 * 114.00148 * 293.98720 * 10 9 7 24 24 H 1.07998 * 119.80067 * 359.56869 * 12 11 9 25 25 H 1.07999 * 120.07262 * 179.97438 * 13 12 11 26 26 H 1.07996 * 120.01281 * 180.20820 * 14 13 12 27 27 H 1.08000 * 119.79270 * 180.02562 * 15 14 13 28 28 H 1.08999 * 109.79039 * 165.56393 * 18 17 16 29 29 H 1.09000 * 109.78818 * 286.39809 * 18 17 16 30 30 H 1.08997 * 117.51112 * 359.36602 * 20 19 9 31 31 H 1.09003 * 117.50667 * 144.44532 * 20 19 9 32 32 H 1.08998 * 117.50655 * 215.69557 * 21 19 9 33 33 H 1.08997 * 117.50953 * 0.74130 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6059 1.9833 -1.3943 5 1 1.3962 2.6817 0.5880 6 1 3.4878 1.4741 0.8065 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1292 0.0246 9 6 3.5112 -1.1943 -0.0326 10 8 3.9766 0.0231 -0.6184 11 6 3.9984 -2.3670 -0.8498 12 6 3.4091 -2.5987 -2.0822 13 6 3.8271 -3.6533 -2.8692 14 6 4.8406 -4.4835 -2.4264 15 6 5.4282 -4.2591 -1.1996 16 6 5.0070 -3.1984 -0.3990 17 8 5.6147 -3.0377 0.8042 18 6 5.5173 -1.7730 1.4610 19 6 4.0544 -1.3195 1.3919 20 6 3.1046 -1.7886 2.4899 21 6 3.5611 -0.3283 2.4422 22 1 -0.4850 0.8400 -0.0004 23 1 3.7492 0.1219 -1.5531 24 1 2.6181 -1.9505 -2.4292 25 1 3.3638 -3.8293 -3.8288 26 1 5.1718 -5.3071 -3.0414 27 1 6.2197 -4.9090 -0.8568 28 1 5.8238 -1.8734 2.5022 29 1 6.1534 -1.0454 0.9569 30 1 2.0743 -2.0035 2.2064 31 1 3.5175 -2.4197 3.2769 32 1 4.2743 0.0012 3.1977 33 1 2.8317 0.4178 2.1269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260499330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:49 Heat of formation + Delta-G solvation = -20.367033 kcal Electronic energy + Delta-G solvation = -18719.125171 eV Core-core repulsion = 15904.436276 eV Total energy + Delta-G solvation = -2814.688895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34540 -37.48522 -36.90303 -34.93129 -32.30004 -30.83986 -29.76100 -27.25546 -26.61822 -23.33755 -22.08410 -21.65681 -21.13787 -18.15431 -17.60046 -17.04601 -16.04013 -15.76484 -15.34018 -14.94649 -14.46012 -14.14815 -13.45069 -13.26014 -12.97478 -12.54982 -12.32791 -12.04324 -11.88753 -11.79146 -11.05751 -10.95574 -10.61238 -10.48601 -10.23840 -10.00025 -9.45235 -9.30445 -9.04914 -8.60379 -8.25995 -8.22202 -7.61187 -6.19484 -4.31637 1.89485 1.97808 3.39091 3.52853 3.72373 3.76030 4.28716 4.47996 4.59820 5.01019 5.14642 5.26545 5.39932 5.46906 5.49431 5.64256 5.78351 5.81390 5.92500 6.04680 6.19411 6.24339 6.35371 6.36451 6.56693 6.76048 6.82660 6.87815 7.04140 7.16398 7.29875 7.35140 7.46740 8.00724 8.09186 8.53178 8.79901 9.39489 10.88487 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.024565 B = 0.011891 C = 0.009527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.541660 B = 2354.235550 C = 2938.303274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.948 3.052 4 H -0.304 1.304 5 H -0.334 1.334 6 H -0.252 1.252 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.297 3.703 10 O -0.549 6.549 11 C -0.149 4.149 12 C -0.059 4.059 13 C -0.167 4.167 14 C -0.099 4.099 15 C -0.166 4.166 16 C 0.136 3.864 17 O -0.322 6.322 18 C 0.101 3.899 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.156 4.156 22 H 0.266 0.734 23 H 0.367 0.633 24 H 0.132 0.868 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -3.911 -0.879 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.787 3.213 4 H -0.234 1.234 5 H -0.267 1.267 6 H -0.179 1.179 7 C -0.579 4.579 8 H 0.100 0.900 9 C 0.258 3.742 10 O -0.358 6.358 11 C -0.151 4.151 12 C -0.077 4.077 13 C -0.185 4.185 14 C -0.117 4.117 15 C -0.185 4.185 16 C 0.091 3.909 17 O -0.236 6.236 18 C 0.026 3.974 19 C -0.158 4.158 20 C -0.178 4.178 21 C -0.193 4.193 22 H 0.075 0.925 23 H 0.216 0.784 24 H 0.149 0.851 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.291 -3.893 -0.162 10.075 hybrid contribution -0.031 0.882 -0.645 1.093 sum 9.260 -3.011 -0.807 9.770 Atomic orbital electron populations 1.69948 1.06760 1.27758 1.47752 1.25200 0.95019 1.00431 0.92943 0.85764 0.77989 0.79487 0.78105 1.23353 1.26694 1.17861 1.21072 0.87654 0.95174 1.54042 0.90041 1.17455 0.93397 0.77863 0.85532 1.86324 1.80997 1.40270 1.28159 1.20877 0.96062 1.00651 0.97487 1.21097 0.97294 0.96536 0.92788 1.20990 0.99583 0.97382 1.00579 1.20735 0.96642 0.99074 0.95221 1.20517 1.03350 0.99822 0.94811 1.18764 0.91741 0.95357 0.85002 1.85757 1.71378 1.35290 1.31198 1.22500 0.95310 0.83048 0.96533 1.22030 0.93518 1.06559 0.93658 1.22960 1.01190 0.96102 0.97585 1.22856 1.03178 0.93711 0.99535 0.92460 0.78436 0.85053 0.86595 0.86404 0.86264 0.88662 0.91864 0.86447 0.90403 0.90288 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 2 C 0.07 1.84 5.20 -17.82 -0.09 1.75 16 3 Si 0.95 22.92 22.16 -169.99 -3.77 19.15 16 4 H -0.30 -7.22 6.98 56.52 0.39 -6.82 16 5 H -0.33 -8.45 7.11 56.52 0.40 -8.05 16 6 H -0.25 -5.93 4.82 56.52 0.27 -5.66 16 7 C -0.54 -13.99 5.44 -34.44 -0.19 -14.18 16 8 H 0.08 2.36 8.03 -52.49 -0.42 1.94 16 9 C 0.30 6.68 0.62 -92.78 -0.06 6.62 16 10 O -0.55 -12.16 7.71 -35.23 -0.27 -12.43 16 11 C -0.15 -3.15 5.02 -104.34 -0.52 -3.67 16 12 C -0.06 -1.15 8.85 -39.53 -0.35 -1.50 16 13 C -0.17 -2.78 10.05 -39.62 -0.40 -3.17 16 14 C -0.10 -1.53 10.04 -39.70 -0.40 -1.93 16 15 C -0.17 -2.85 9.90 -39.28 -0.39 -3.24 16 16 C 0.14 2.71 6.47 -39.14 -0.25 2.46 16 17 O -0.32 -6.23 10.19 -18.95 -0.19 -6.42 16 18 C 0.10 1.83 6.83 37.32 0.25 2.08 16 19 C -0.16 -3.26 1.76 -154.78 -0.27 -3.53 16 20 C -0.14 -2.85 9.50 -26.91 -0.26 -3.10 16 21 C -0.16 -3.15 8.57 -26.89 -0.23 -3.38 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.37 7.44 7.80 45.56 0.36 7.80 16 24 H 0.13 2.64 7.52 -52.49 -0.39 2.24 16 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.10 1.45 8.13 -51.93 -0.42 1.03 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.12 2.68 6.68 -51.93 -0.35 2.34 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.10 2.34 4.11 -51.93 -0.21 2.13 16 LS Contribution 260.39 15.07 3.92 3.92 Total: -1.00 -29.46 260.39 -5.94 -35.40 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -3.25 Total: 10.08 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -3.15 Total: -24.81 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.77 Total: -24.89 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.46 Total: -18.85 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -3.77 Total: 19.15 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.46 -5.94 -35.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260499330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.030 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds