Wall clock time and date at job start Mon Mar 30 2020 03:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 C 1.53004 * 109.47251 * 119.99632 * 2 1 3 5 5 H 1.09001 * 109.47310 * 184.46850 * 4 2 1 6 6 C 1.52997 * 109.47101 * 64.46854 * 4 2 1 7 7 C 1.50705 * 109.47055 * 65.90952 * 6 4 2 8 8 H 1.08001 * 119.99697 * 358.22201 * 7 6 4 9 9 C 1.37870 * 119.99988 * 178.23059 * 7 6 4 10 10 N 1.31518 * 120.00492 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00048 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47379 * 89.99676 * 11 9 7 13 13 H 1.48500 * 109.47364 * 209.99986 * 11 9 7 14 14 H 1.48500 * 109.47226 * 329.99979 * 11 9 7 15 15 C 1.52998 * 109.47067 * 304.47068 * 4 2 1 16 16 H 1.09000 * 113.40935 * 314.66392 * 15 4 2 17 17 C 1.55886 * 114.41639 * 88.33667 * 15 4 2 18 18 C 1.55885 * 102.95218 * 137.59871 * 17 15 4 19 19 S 1.83089 * 82.43859 * 335.79592 * 18 17 15 20 20 O 1.42098 * 111.35893 * 269.57967 * 19 18 17 21 21 O 1.42101 * 111.51347 * 130.46967 * 19 18 17 22 22 H 1.08998 * 109.47153 * 299.99977 * 1 2 3 23 23 H 1.08996 * 109.47530 * 60.00379 * 1 2 3 24 24 H 1.09009 * 109.47036 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47287 * 239.99276 * 2 1 3 26 26 H 1.09007 * 109.46950 * 174.27194 * 3 2 1 27 27 H 1.09007 * 109.47003 * 294.26493 * 3 2 1 28 28 H 1.09001 * 109.47613 * 54.26664 * 3 2 1 29 29 H 1.09002 * 109.47345 * 185.90483 * 6 4 2 30 30 H 1.08994 * 109.47470 * 305.90572 * 6 4 2 31 31 H 0.96995 * 119.99914 * 179.97438 * 10 9 7 32 32 H 1.09002 * 110.81884 * 256.13355 * 17 15 4 33 33 H 1.08995 * 110.82077 * 19.06284 * 17 15 4 34 34 H 1.09006 * 114.38136 * 222.40268 * 18 17 15 35 35 H 1.09002 * 114.37891 * 89.18709 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1271 -0.6524 1.2902 6 6 1.6239 -2.1924 1.1945 7 6 2.3299 -2.8718 0.0494 8 1 2.9854 -2.3038 -0.5941 9 6 2.1388 -4.2184 -0.1767 10 7 1.3408 -4.9102 0.6071 11 14 3.0134 -5.0604 -1.5964 12 1 4.3257 -5.5779 -1.1325 13 1 2.1832 -6.1882 -2.0904 14 1 3.2267 -4.0844 -2.6952 15 6 1.4403 -0.0677 2.4960 16 1 1.4775 1.0215 2.4744 17 6 0.0646 -0.6561 2.9334 18 6 0.2036 -0.7547 4.4829 19 16 1.9880 -0.8113 4.0768 20 8 2.4348 -2.1476 3.8928 21 8 2.7295 0.1172 4.8562 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1252 1.4442 0.1026 27 1 1.7628 1.9258 -0.9369 28 1 1.5952 1.9852 0.8342 29 1 1.8948 -2.6818 2.1300 30 1 0.5459 -2.2600 1.0481 31 1 1.2062 -5.8574 0.4477 32 1 -0.7488 0.0157 2.6593 33 1 -0.0923 -1.6415 2.4950 34 1 -0.1896 -1.6763 4.9122 35 1 -0.1073 0.1411 5.0205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:14 Heat of formation + Delta-G solvation = -61.316850 kcal Electronic energy + Delta-G solvation = -17271.620927 eV Core-core repulsion = 14590.600266 eV Total energy + Delta-G solvation = -2681.020661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.30184 -36.60667 -35.54717 -34.03155 -32.69681 -29.85800 -27.27034 -26.59192 -24.03411 -22.36664 -20.93651 -18.88108 -17.87952 -16.75044 -16.37685 -15.99701 -15.33736 -14.47444 -14.03667 -13.84302 -13.70211 -13.54789 -12.90222 -12.50901 -12.22258 -12.03601 -11.77712 -11.67103 -11.56610 -11.17299 -11.00590 -10.78215 -10.74773 -10.56851 -10.32789 -10.09314 -9.98617 -9.89369 -9.20132 -9.15303 -8.81655 -8.21092 -5.93487 -3.93240 0.44050 2.71491 3.35639 3.42150 3.43938 3.91191 4.32627 4.41404 4.49654 4.59243 5.23211 5.30093 5.42672 5.47508 5.58930 5.67340 5.70290 5.81218 5.86596 6.08653 6.21611 6.25707 6.32537 6.38067 6.59802 6.64853 6.84209 6.97785 7.12834 7.70974 7.90589 8.07088 8.47359 9.11808 9.68454 11.18076 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.009204 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.583086 B = 3041.509931 C = 3650.203404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.151 4.151 4 C -0.047 4.047 5 H 0.071 0.929 6 C -0.014 4.014 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.887 3.113 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.504 4.504 16 H 0.141 0.859 17 C -0.179 4.179 18 C -0.575 4.575 19 S 2.348 3.652 20 O -0.894 6.894 21 O -0.960 6.960 22 H 0.049 0.951 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.259 0.741 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 10.656 4.062 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.208 4.208 4 C -0.066 4.066 5 H 0.089 0.911 6 C -0.051 4.051 7 C -0.550 4.550 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.715 3.285 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.615 4.615 16 H 0.159 0.841 17 C -0.218 4.218 18 C -0.704 4.704 19 S 2.533 3.467 20 O -0.891 6.891 21 O -0.957 6.957 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.660 10.138 4.629 11.458 hybrid contribution -0.594 -0.227 -1.258 1.410 sum -3.253 9.911 3.371 10.962 Atomic orbital electron populations 1.21971 0.96073 1.02435 0.99957 1.20986 0.95528 0.94013 0.99176 1.21973 1.00720 0.97505 1.00585 1.20932 0.98413 0.98322 0.88964 0.91099 1.19941 0.97121 0.87504 1.00496 1.21090 1.27141 0.93767 1.12955 0.92709 1.24949 0.95443 0.97552 0.96306 1.69949 1.37213 1.07897 1.38031 0.86687 0.79730 0.79279 0.82825 1.20747 1.21414 1.20029 1.30610 1.04252 1.09576 1.17076 0.84096 1.23715 0.99582 1.07084 0.91450 1.30699 1.27513 1.10647 1.01536 1.11493 0.78301 0.77060 0.79838 1.93733 1.78440 1.33129 1.83771 1.93503 1.69720 1.64154 1.68344 0.93236 0.94237 0.91374 0.89698 0.93068 0.93529 0.93318 0.91699 0.95543 0.93139 0.88048 0.85343 0.84358 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.04 37.16 0.30 -2.00 16 2 C -0.08 -1.31 2.59 -90.62 -0.23 -1.54 16 3 C -0.15 -2.07 8.86 37.16 0.33 -1.75 16 4 C -0.05 -0.88 1.74 -90.62 -0.16 -1.04 16 5 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 6 C -0.01 -0.33 3.02 -27.88 -0.08 -0.42 16 7 C -0.51 -13.82 8.38 -34.44 -0.29 -14.11 16 8 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 11 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 C -0.50 -7.50 3.49 -25.19 -0.09 -7.59 16 16 H 0.14 1.70 6.43 -51.93 -0.33 1.37 16 17 C -0.18 -2.46 4.87 -23.65 -0.12 -2.57 16 18 C -0.58 -6.85 9.09 38.70 0.35 -6.50 16 19 S 2.35 37.30 6.52 -107.50 -0.70 36.60 16 20 O -0.89 -18.61 15.04 -57.47 -0.86 -19.47 16 21 O -0.96 -17.12 18.18 -57.47 -1.04 -18.16 16 22 H 0.05 0.67 5.33 -51.93 -0.28 0.39 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.22 6.43 -51.92 -0.33 0.88 16 25 H 0.08 1.62 6.86 -51.93 -0.36 1.27 16 26 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 28 H 0.05 0.59 6.63 -51.93 -0.34 0.25 16 29 H 0.07 1.68 4.86 -51.93 -0.25 1.43 16 30 H 0.03 0.64 4.67 -51.93 -0.24 0.40 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.10 1.17 6.91 -51.93 -0.36 0.81 16 33 H 0.13 2.12 5.27 -51.93 -0.27 1.84 16 34 H 0.14 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.14 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 277.04 15.07 4.17 4.17 Total: -1.00 -33.33 277.04 -7.62 -40.95 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.81 Total: 0.91 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: -0.09 Total: -35.96 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.91 Total: -37.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 37.30 SS G_CDS: -0.70 Total: 36.60 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.33 -7.62 -40.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.367 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds