Wall clock time and date at job start Mon Mar 30 2020 03:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 C 1.53004 * 109.47251 * 119.99632 * 2 1 3 5 5 H 1.09001 * 109.47310 * 184.46850 * 4 2 1 6 6 C 1.52997 * 109.47101 * 64.46854 * 4 2 1 7 7 C 1.50705 * 109.47055 * 65.90952 * 6 4 2 8 8 H 1.08001 * 119.99697 * 358.22201 * 7 6 4 9 9 C 1.37870 * 119.99988 * 178.23059 * 7 6 4 10 10 N 1.31518 * 120.00492 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00048 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47379 * 89.99676 * 11 9 7 13 13 H 1.48500 * 109.47364 * 209.99986 * 11 9 7 14 14 H 1.48500 * 109.47226 * 329.99979 * 11 9 7 15 15 C 1.52998 * 109.47067 * 304.47068 * 4 2 1 16 16 H 1.09000 * 113.40935 * 314.66392 * 15 4 2 17 17 C 1.55886 * 114.41639 * 88.33667 * 15 4 2 18 18 C 1.55885 * 102.95218 * 137.59871 * 17 15 4 19 19 S 1.83089 * 82.43859 * 335.79592 * 18 17 15 20 20 O 1.42098 * 111.35893 * 269.57967 * 19 18 17 21 21 O 1.42101 * 111.51347 * 130.46967 * 19 18 17 22 22 H 1.08998 * 109.47153 * 299.99977 * 1 2 3 23 23 H 1.08996 * 109.47530 * 60.00379 * 1 2 3 24 24 H 1.09009 * 109.47036 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47287 * 239.99276 * 2 1 3 26 26 H 1.09007 * 109.46950 * 174.27194 * 3 2 1 27 27 H 1.09007 * 109.47003 * 294.26493 * 3 2 1 28 28 H 1.09001 * 109.47613 * 54.26664 * 3 2 1 29 29 H 1.09002 * 109.47345 * 185.90483 * 6 4 2 30 30 H 1.08994 * 109.47470 * 305.90572 * 6 4 2 31 31 H 0.96995 * 119.99914 * 179.97438 * 10 9 7 32 32 H 1.09002 * 110.81884 * 256.13355 * 17 15 4 33 33 H 1.08995 * 110.82077 * 19.06284 * 17 15 4 34 34 H 1.09006 * 114.38136 * 222.40268 * 18 17 15 35 35 H 1.09002 * 114.37891 * 89.18709 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1271 -0.6524 1.2902 6 6 1.6239 -2.1924 1.1945 7 6 2.3299 -2.8718 0.0494 8 1 2.9854 -2.3038 -0.5941 9 6 2.1388 -4.2184 -0.1767 10 7 1.3408 -4.9102 0.6071 11 14 3.0134 -5.0604 -1.5964 12 1 4.3257 -5.5779 -1.1325 13 1 2.1832 -6.1882 -2.0904 14 1 3.2267 -4.0844 -2.6952 15 6 1.4403 -0.0677 2.4960 16 1 1.4775 1.0215 2.4744 17 6 0.0646 -0.6561 2.9334 18 6 0.2036 -0.7547 4.4829 19 16 1.9880 -0.8113 4.0768 20 8 2.4348 -2.1476 3.8928 21 8 2.7295 0.1172 4.8562 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1252 1.4442 0.1026 27 1 1.7628 1.9258 -0.9369 28 1 1.5952 1.9852 0.8342 29 1 1.8948 -2.6818 2.1300 30 1 0.5459 -2.2600 1.0481 31 1 1.2062 -5.8574 0.4477 32 1 -0.7488 0.0157 2.6593 33 1 -0.0923 -1.6415 2.4950 34 1 -0.1896 -1.6763 4.9122 35 1 -0.1073 0.1411 5.0205 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260504034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:13 Heat of formation + Delta-G solvation = -85.213910 kcal Electronic energy + Delta-G solvation = -17272.657181 eV Core-core repulsion = 14590.600266 eV Total energy + Delta-G solvation = -2682.056915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67575 -37.94539 -36.88844 -35.27679 -34.68381 -31.44326 -28.77658 -27.85221 -25.63175 -23.92389 -22.23210 -20.22915 -19.20794 -18.47671 -17.81068 -17.37486 -16.70404 -16.42449 -15.39246 -15.17469 -15.07314 -14.83341 -14.20520 -13.87282 -13.75033 -13.47328 -13.25157 -13.06384 -12.89906 -12.72956 -12.51007 -12.37226 -12.28527 -12.16101 -11.73827 -11.58897 -11.39904 -11.11030 -10.92019 -10.76891 -10.55609 -10.18722 -8.09254 -6.13700 -0.76693 1.38987 1.40679 1.49605 1.53583 2.45224 2.71747 3.11666 3.25994 3.27829 3.43307 4.03547 4.19241 4.26701 4.31281 4.51403 4.52093 4.76741 4.79816 4.91177 5.00047 5.03300 5.07393 5.22135 5.25534 5.31941 5.44964 5.60106 5.68191 5.80708 5.97248 6.09698 6.39952 7.04711 7.50736 9.02538 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.009204 C = 0.007669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.583086 B = 3041.509931 C = 3650.203404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.047 4.047 5 H 0.057 0.943 6 C -0.013 4.013 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.000 4.000 10 N -0.929 5.929 11 Si 0.947 3.053 12 H -0.281 1.281 13 H -0.284 1.284 14 H -0.264 1.264 15 C -0.489 4.489 16 H 0.182 0.818 17 C -0.181 4.181 18 C -0.521 4.521 19 S 2.320 3.680 20 O -0.960 6.960 21 O -0.988 6.988 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 13.227 4.082 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.066 4.066 5 H 0.075 0.925 6 C -0.050 4.050 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.197 4.197 10 N -0.570 5.570 11 Si 0.773 3.227 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.188 1.188 15 C -0.601 4.601 16 H 0.199 0.801 17 C -0.221 4.221 18 C -0.653 4.653 19 S 2.512 3.488 20 O -0.957 6.957 21 O -0.985 6.985 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.038 12.711 4.640 14.121 hybrid contribution -0.201 -0.991 -1.243 1.602 sum -4.239 11.720 3.397 12.918 Atomic orbital electron populations 1.21932 0.94862 1.01061 1.02189 1.20935 0.96580 0.95705 0.96577 1.21922 1.00748 0.95090 1.02503 1.20726 0.98013 0.95755 0.92155 0.92468 1.19831 0.96345 0.90783 0.97996 1.21614 1.26646 0.94187 1.13642 0.92785 1.25773 0.96448 0.98559 0.98907 1.70078 1.39011 1.08024 1.39904 0.85721 0.78424 0.78389 0.80151 1.20745 1.20979 1.18808 1.30557 1.04154 1.11448 1.13922 0.80077 1.23670 0.99785 1.06127 0.92534 1.30627 1.20516 1.13476 1.00720 1.12200 0.80675 0.75572 0.80378 1.93649 1.81031 1.36218 1.84810 1.93451 1.72135 1.63953 1.68973 0.90341 0.92631 0.94524 0.93035 0.93238 0.92077 0.90783 0.94152 0.96180 0.93299 0.84260 0.88564 0.83112 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.04 71.98 0.58 -3.58 16 2 C -0.08 -2.55 2.59 -10.79 -0.03 -2.58 16 3 C -0.15 -3.54 8.86 71.98 0.64 -2.90 16 4 C -0.05 -1.76 1.74 -10.79 -0.02 -1.78 16 5 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 6 C -0.01 -0.63 3.02 29.85 0.09 -0.54 16 7 C -0.52 -29.29 8.38 25.60 0.21 -29.08 16 8 H 0.05 2.94 7.07 -2.91 -0.02 2.92 16 9 C 0.00 0.02 5.46 84.65 0.46 0.48 16 10 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 11 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 15 C -0.49 -13.43 3.49 31.59 0.11 -13.32 16 16 H 0.18 3.49 6.43 -2.39 -0.02 3.48 16 17 C -0.18 -4.42 4.87 32.59 0.16 -4.26 16 18 C -0.52 -10.35 9.09 72.98 0.66 -9.69 16 19 S 2.32 72.48 6.52 -56.49 -0.37 72.12 16 20 O -0.96 -42.15 15.04 -127.71 -1.92 -44.07 16 21 O -0.99 -34.50 18.18 -127.71 -2.32 -36.82 16 22 H 0.08 1.77 5.33 -2.39 -0.01 1.76 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.28 6.43 -2.38 -0.02 1.27 16 25 H 0.05 1.99 6.86 -2.39 -0.02 1.98 16 26 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 1.43 6.63 -2.39 -0.02 1.41 16 29 H 0.04 2.21 4.86 -2.39 -0.01 2.20 16 30 H 0.02 1.01 4.67 -2.39 -0.01 1.00 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.14 2.42 6.91 -2.39 -0.02 2.40 16 33 H 0.10 3.10 5.27 -2.39 -0.01 3.09 16 34 H 0.15 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.18 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -76.75 277.04 1.65 -75.09 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.09 Total: 10.17 kcal Atomic # 6 Polarization: -70.10 SS G_CDS: 2.87 Total: -67.23 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 8 Polarization: -76.65 SS G_CDS: -4.24 Total: -80.89 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 72.48 SS G_CDS: -0.37 Total: 72.12 kcal Total: -76.75 1.65 -75.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.121 kcal (2) G-P(sol) polarization free energy of solvation -76.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds