Wall clock time and date at job start Mon Mar 30 2020 04:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 H 1.08992 * 109.55155 * 300.00488 * 13 2 1 15 15 C 1.53038 * 109.54826 * 60.19814 * 13 2 1 16 16 C 1.52586 * 109.98721 * 183.50091 * 15 13 2 17 17 C 1.52585 * 110.64256 * 290.01125 * 16 15 13 18 18 C 1.53034 * 109.98441 * 69.98788 * 17 16 15 19 19 S 1.81670 * 109.54978 * 179.80836 * 13 2 1 20 20 O 1.42104 * 108.66479 * 300.17769 * 19 13 2 21 21 O 1.42096 * 108.66217 * 71.51812 * 19 13 2 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 26 26 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 27 27 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.38464 * 303.65684 * 15 13 2 29 29 H 1.08998 * 109.38807 * 63.44356 * 15 13 2 30 30 H 1.09002 * 109.24037 * 50.31048 * 16 15 13 31 31 H 1.08999 * 109.24233 * 169.70981 * 16 15 13 32 32 H 1.09007 * 109.38499 * 190.14230 * 17 16 15 33 33 H 1.08994 * 109.38557 * 309.82716 * 17 16 15 34 34 H 1.09000 * 109.55551 * 56.20397 * 18 17 16 35 35 H 1.09003 * 109.55294 * 176.39881 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6447 0.2773 4.7994 9 14 2.9634 -1.9883 3.9028 10 1 4.4168 -1.6850 3.8781 11 1 2.6160 -2.6420 5.1903 12 1 2.6287 -2.8994 2.7790 13 6 2.0401 -0.7213 -1.2492 14 1 1.6774 -1.7491 -1.2505 15 6 1.5350 0.0015 -2.5000 16 6 1.9652 -0.7586 -3.7511 17 6 3.4728 -0.6453 -3.9575 18 6 4.2097 -1.4455 -2.8811 19 16 3.8567 -0.7176 -1.2542 20 8 4.3088 0.6296 -1.2528 21 8 4.3160 -1.6078 -0.2464 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 1.8926 -0.0452 5.6800 28 1 0.4470 0.0609 -2.4690 29 1 1.9515 1.0083 -2.5290 30 1 1.6953 -1.8092 -3.6438 31 1 1.4517 -0.3432 -4.6182 32 1 3.7337 -1.0362 -4.9411 33 1 3.7687 0.4019 -3.8960 34 1 3.8679 -2.4804 -2.8978 35 1 5.2823 -1.4125 -3.0722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260632201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:55 Heat of formation + Delta-G solvation = -92.934456 kcal Electronic energy + Delta-G solvation = -17181.317287 eV Core-core repulsion = 14498.925584 eV Total energy + Delta-G solvation = -2682.391703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.89039 -36.67683 -35.80180 -35.18934 -32.42639 -30.43213 -27.84937 -26.95262 -24.48824 -22.07118 -20.95153 -19.42903 -18.58059 -17.02384 -16.48027 -16.34816 -15.37935 -14.88529 -14.40136 -14.02830 -13.81430 -13.48051 -13.29561 -12.76824 -12.48792 -12.08115 -11.82873 -11.81846 -11.65634 -11.50637 -11.42794 -11.15631 -10.97616 -10.86606 -10.61749 -10.40442 -10.15679 -9.66309 -9.56924 -9.47965 -9.01209 -8.44261 -5.97477 -3.95682 0.27478 2.99293 3.43839 3.50491 3.60018 3.93966 4.05308 4.47737 4.52765 4.56565 4.71464 4.78958 4.91463 5.09584 5.28418 5.37062 5.43315 5.55452 5.63506 5.68313 5.82686 5.86646 6.00951 6.03083 6.12341 6.30394 6.66002 6.75410 6.97470 7.25270 7.37452 7.83517 8.57236 9.05528 9.65504 11.15096 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032333 B = 0.008503 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.777046 B = 3292.329967 C = 3769.352473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.062 4.062 3 H 0.081 0.919 4 C -0.039 4.039 5 C -0.516 4.516 6 H 0.076 0.924 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.261 1.261 13 C -0.551 4.551 14 H 0.132 0.868 15 C -0.110 4.110 16 C -0.140 4.140 17 C -0.109 4.109 18 C -0.619 4.619 19 S 2.410 3.590 20 O -0.935 6.935 21 O -0.931 6.931 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -3.848 -19.498 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 H 0.099 0.901 4 C -0.076 4.076 5 C -0.554 4.554 6 H 0.094 0.906 7 C -0.132 4.132 8 N -0.542 5.542 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.185 1.185 13 C -0.662 4.662 14 H 0.150 0.850 15 C -0.148 4.148 16 C -0.178 4.178 17 C -0.147 4.147 18 C -0.746 4.746 19 S 2.593 3.407 20 O -0.932 6.932 21 O -0.928 6.928 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.147 0.853 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.487 -3.577 -18.672 19.070 hybrid contribution 0.109 -1.322 -0.336 1.368 sum 1.597 -4.899 -19.008 19.694 Atomic orbital electron populations 1.21709 0.94098 1.01340 1.01310 1.20919 0.97696 0.99273 0.90235 0.90115 1.20115 0.97291 0.96761 0.93480 1.20989 1.35911 1.09592 0.88873 0.90564 1.24967 0.95393 0.96959 0.95880 1.69907 1.46982 1.39287 0.98017 0.86889 0.81275 0.84629 0.77397 1.19883 1.21532 1.18504 1.30209 1.23045 1.08896 1.04072 0.85030 1.21482 1.03995 0.99253 0.90078 1.21733 0.95173 1.01888 0.98991 1.21259 0.94641 1.00549 0.98224 1.30395 1.09926 1.12112 1.22170 1.08504 0.79329 0.76186 0.76687 1.93549 1.79378 1.34093 1.86227 1.93612 1.79386 1.66873 1.52958 0.94049 0.93345 0.90779 0.95629 0.95138 0.92769 0.89014 0.89930 0.90912 0.90069 0.90095 0.89863 0.85311 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.66 37.16 0.32 -1.86 16 2 C -0.06 -1.19 1.92 -90.62 -0.17 -1.37 16 3 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 4 C -0.04 -0.96 3.19 -27.89 -0.09 -1.05 16 5 C -0.52 -14.99 8.96 -34.44 -0.31 -15.30 16 6 H 0.08 2.31 7.30 -52.48 -0.38 1.93 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -28.51 13.96 55.43 0.77 -27.74 16 9 Si 0.87 23.24 27.47 -169.99 -4.67 18.57 16 10 H -0.27 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 13 C -0.55 -8.11 2.03 -26.71 -0.05 -8.16 16 14 H 0.13 1.67 8.14 -51.93 -0.42 1.24 16 15 C -0.11 -1.21 4.78 -26.92 -0.13 -1.34 16 16 C -0.14 -1.16 5.63 -27.16 -0.15 -1.32 16 17 C -0.11 -0.95 5.73 -26.93 -0.15 -1.10 16 18 C -0.62 -6.39 6.34 37.18 0.24 -6.15 16 19 S 2.41 38.99 4.18 -107.50 -0.45 38.54 16 20 O -0.94 -17.79 17.94 -57.81 -1.04 -18.82 16 21 O -0.93 -19.14 15.73 -57.81 -0.91 -20.05 16 22 H 0.04 0.57 6.36 -51.93 -0.33 0.24 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.46 6.95 -51.93 -0.36 1.09 16 25 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.03 0.79 4.66 -51.92 -0.24 0.55 16 27 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 28 H 0.09 0.93 6.25 -51.93 -0.32 0.60 16 29 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 34 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.13 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -35.75 280.89 -8.05 -43.81 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.39 Total: -2.90 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: -0.60 Total: -35.65 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.77 Total: -27.74 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.95 Total: -38.87 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.67 Total: 18.57 kcal Atomic # 16 Polarization: 38.99 SS G_CDS: -0.45 Total: 38.54 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.75 -8.05 -43.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260632201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.128 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds