Wall clock time and date at job start Mon Mar 30 2020 04:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00228 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99783 * 359.97438 * 7 5 4 10 10 H 1.48489 * 109.47262 * 90.00178 * 9 7 5 11 11 H 1.48509 * 109.46916 * 210.00229 * 9 7 5 12 12 H 1.48493 * 109.47108 * 329.99715 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 H 1.08992 * 109.55155 * 300.00488 * 13 2 1 15 15 C 1.53038 * 109.54826 * 60.19814 * 13 2 1 16 16 C 1.52586 * 109.98721 * 183.50091 * 15 13 2 17 17 C 1.52585 * 110.64256 * 290.01125 * 16 15 13 18 18 C 1.53034 * 109.98441 * 69.98788 * 17 16 15 19 19 S 1.81670 * 109.54978 * 179.80836 * 13 2 1 20 20 O 1.42104 * 108.66479 * 300.17769 * 19 13 2 21 21 O 1.42096 * 108.66217 * 71.51812 * 19 13 2 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 26 26 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 27 27 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.38464 * 303.65684 * 15 13 2 29 29 H 1.08998 * 109.38807 * 63.44356 * 15 13 2 30 30 H 1.09002 * 109.24037 * 50.31048 * 16 15 13 31 31 H 1.08999 * 109.24233 * 169.70981 * 16 15 13 32 32 H 1.09007 * 109.38499 * 190.14230 * 17 16 15 33 33 H 1.08994 * 109.38557 * 309.82716 * 17 16 15 34 34 H 1.09000 * 109.55551 * 56.20397 * 18 17 16 35 35 H 1.09003 * 109.55294 * 176.39881 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 1.6447 0.2773 4.7994 9 14 2.9634 -1.9883 3.9028 10 1 4.4168 -1.6850 3.8781 11 1 2.6160 -2.6420 5.1903 12 1 2.6287 -2.8994 2.7790 13 6 2.0401 -0.7213 -1.2492 14 1 1.6774 -1.7491 -1.2505 15 6 1.5350 0.0015 -2.5000 16 6 1.9652 -0.7586 -3.7511 17 6 3.4728 -0.6453 -3.9575 18 6 4.2097 -1.4455 -2.8811 19 16 3.8567 -0.7176 -1.2542 20 8 4.3088 0.6296 -1.2528 21 8 4.3160 -1.6078 -0.2464 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 1.8926 -0.0452 5.6800 28 1 0.4470 0.0609 -2.4690 29 1 1.9515 1.0083 -2.5290 30 1 1.6953 -1.8092 -3.6438 31 1 1.4517 -0.3432 -4.6182 32 1 3.7337 -1.0362 -4.9411 33 1 3.7687 0.4019 -3.8960 34 1 3.8679 -2.4804 -2.8978 35 1 5.2823 -1.4125 -3.0722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260632201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:55 Heat of formation + Delta-G solvation = -119.807209 kcal Electronic energy + Delta-G solvation = -17182.482577 eV Core-core repulsion = 14498.925584 eV Total energy + Delta-G solvation = -2683.556993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.98378 -38.05413 -37.08251 -36.45111 -34.53348 -31.70539 -29.45236 -28.14017 -25.88772 -23.58115 -21.80105 -20.99262 -19.81350 -19.02687 -17.77296 -17.59762 -16.61603 -16.42337 -15.67321 -15.37454 -14.97147 -14.75156 -14.58590 -14.39376 -13.94288 -13.55266 -13.21301 -13.15330 -13.01212 -12.92662 -12.71718 -12.41758 -12.23253 -12.17055 -11.89667 -11.72294 -11.65336 -11.54844 -11.29615 -11.05120 -10.81355 -10.51193 -8.32908 -6.34159 -0.87961 1.28008 1.33075 1.45172 1.86632 2.32391 2.79067 3.00693 3.05492 3.57991 3.67684 3.78279 3.83785 4.11452 4.21213 4.27485 4.45138 4.54096 4.66073 4.73870 4.78744 4.97247 5.01725 5.04670 5.13055 5.23770 5.28369 5.31881 5.41976 5.47221 5.57040 5.65663 6.24786 6.72369 7.29399 8.83215 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.032333 B = 0.008503 C = 0.007427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.777046 B = 3292.329967 C = 3769.352473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 H 0.058 0.942 4 C -0.042 4.042 5 C -0.520 4.520 6 H 0.046 0.954 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.926 3.074 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.246 1.246 13 C -0.540 4.540 14 H 0.159 0.841 15 C -0.111 4.111 16 C -0.138 4.138 17 C -0.116 4.116 18 C -0.578 4.578 19 S 2.372 3.628 20 O -0.985 6.985 21 O -0.991 6.991 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.037 0.963 25 H 0.031 0.969 26 H 0.018 0.982 27 H 0.266 0.734 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.162 0.838 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -6.070 -23.353 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.079 4.079 5 C -0.558 4.558 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.750 3.250 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.169 1.169 13 C -0.652 4.652 14 H 0.177 0.823 15 C -0.149 4.149 16 C -0.175 4.175 17 C -0.154 4.154 18 C -0.711 4.711 19 S 2.563 3.437 20 O -0.982 6.982 21 O -0.988 6.988 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.180 0.820 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.073 -5.774 -22.479 23.233 hybrid contribution 0.216 -0.555 0.762 0.967 sum 1.289 -6.329 -21.716 22.657 Atomic orbital electron populations 1.21667 0.92462 1.02285 1.01592 1.20765 0.99150 0.98064 0.90459 0.92329 1.20100 0.96701 0.96853 0.94247 1.21380 1.34644 1.08885 0.90882 0.93604 1.25812 0.96685 1.00350 0.95777 1.70026 1.48761 1.41233 0.98636 0.86015 0.79266 0.81263 0.78479 1.20532 1.19822 1.16906 1.30051 1.21550 1.10242 1.03343 0.82336 1.21596 1.04755 0.98917 0.89618 1.21781 0.94864 1.02842 0.97990 1.21468 0.94872 1.00117 0.98942 1.30076 1.11752 1.13247 1.16028 1.09092 0.80078 0.75347 0.79231 1.93485 1.80303 1.36554 1.87843 1.93528 1.80507 1.67303 1.57471 0.89995 0.91979 0.94344 0.95102 0.96362 0.92475 0.87487 0.90850 0.88798 0.87293 0.86392 0.90594 0.81980 0.83587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 8.66 71.98 0.62 -3.50 16 2 C -0.06 -2.53 1.92 -10.79 -0.02 -2.55 16 3 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 4 C -0.04 -2.10 3.19 29.85 0.10 -2.00 16 5 C -0.52 -31.59 8.96 25.60 0.23 -31.36 16 6 H 0.05 2.97 7.30 -2.91 -0.02 2.95 16 7 C 0.01 0.68 5.47 84.65 0.46 1.14 16 8 N -0.95 -61.92 13.96 21.44 0.30 -61.62 16 9 Si 0.93 48.80 27.47 68.60 1.88 50.69 16 10 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 11 H -0.27 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.25 -12.23 6.54 99.48 0.65 -11.57 16 13 C -0.54 -14.77 2.03 30.61 0.06 -14.71 16 14 H 0.16 3.43 8.14 -2.39 -0.02 3.41 16 15 C -0.11 -2.04 4.78 30.47 0.15 -1.90 16 16 C -0.14 -1.47 5.63 30.32 0.17 -1.30 16 17 C -0.12 -1.39 5.73 30.47 0.17 -1.22 16 18 C -0.58 -9.38 6.34 71.99 0.46 -8.93 16 19 S 2.37 75.22 4.18 -56.49 -0.24 74.98 16 20 O -0.98 -38.69 17.94 -127.40 -2.29 -40.97 16 21 O -0.99 -41.28 15.73 -127.40 -2.00 -43.28 16 22 H 0.08 2.07 6.36 -2.39 -0.02 2.05 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.54 6.95 -2.39 -0.02 1.53 16 25 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 26 H 0.02 0.98 4.66 -2.38 -0.01 0.97 16 27 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 28 H 0.11 1.66 6.25 -2.39 -0.01 1.65 16 29 H 0.07 1.50 8.02 -2.39 -0.02 1.48 16 30 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 31 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 1.08 8.02 -2.39 -0.02 1.06 16 34 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -84.06 280.89 1.06 -82.99 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.00 Total: 3.52 kcal Atomic # 6 Polarization: -68.71 SS G_CDS: 2.40 Total: -66.31 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.30 Total: -61.62 kcal Atomic # 8 Polarization: -79.97 SS G_CDS: -4.29 Total: -84.25 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.88 Total: 50.69 kcal Atomic # 16 Polarization: 75.22 SS G_CDS: -0.24 Total: 74.98 kcal Total: -84.06 1.06 -82.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260632201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.814 kcal (2) G-P(sol) polarization free energy of solvation -84.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds