Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47293 * 270.00468 * 3 2 1 5 5 H 1.48504 * 109.46926 * 30.00309 * 3 2 1 6 6 H 1.48500 * 109.46993 * 150.00385 * 3 2 1 7 7 C 1.37873 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46725 * 179.97438 * 9 7 2 11 11 C 1.38288 * 119.86684 * 270.01522 * 10 9 7 12 12 C 1.38300 * 120.24801 * 179.43867 * 11 10 9 13 13 C 1.38522 * 119.83680 * 0.29199 * 12 11 10 14 14 C 1.39560 * 119.90021 * 0.33650 * 13 12 11 15 15 C 1.38316 * 119.87049 * 90.00269 * 10 9 7 16 16 N 1.40062 * 119.23553 * 177.04701 * 14 13 12 17 17 C 1.35062 * 120.24185 * 49.85478 * 16 14 13 18 18 O 1.21301 * 119.79797 * 184.52818 * 17 16 14 19 19 C 1.50588 * 120.39339 * 4.50556 * 17 16 14 20 20 C 1.52899 * 110.12548 * 284.36320 * 19 17 16 21 21 N 1.40018 * 120.65071 * 181.43397 * 13 12 11 22 22 H 0.97008 * 120.00711 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47331 * 60.00303 * 9 7 2 24 24 H 1.08996 * 109.47317 * 299.99290 * 9 7 2 25 25 H 1.07999 * 119.87696 * 359.46798 * 11 10 9 26 26 H 1.08003 * 120.08098 * 180.30913 * 12 11 10 27 27 H 1.08002 * 120.07854 * 359.90033 * 15 10 9 28 28 H 0.96998 * 119.96507 * 229.68074 * 16 14 13 29 29 H 1.08999 * 109.35855 * 164.15911 * 19 17 16 30 30 H 1.09005 * 109.25308 * 44.50112 * 19 17 16 31 31 H 1.09002 * 109.40900 * 283.56997 * 20 19 17 32 32 H 1.09002 * 109.34009 * 163.76738 * 20 19 17 33 33 H 0.96999 * 120.59556 * 287.55470 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2303 -3.6445 -0.0027 11 6 2.6781 -4.1667 -1.2024 12 6 3.5857 -5.2101 -1.2126 13 6 4.0429 -5.7376 -0.0161 14 6 3.5808 -5.2192 1.1945 15 6 2.6780 -4.1692 1.1962 16 7 4.0040 -5.8035 2.3949 17 6 5.3176 -6.0253 2.6176 18 8 5.6690 -6.6059 3.6229 19 6 6.3483 -5.5564 1.6249 20 6 6.3581 -6.4753 0.4029 21 7 4.9843 -6.7740 -0.0062 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.3181 -3.7578 -2.1349 26 1 3.9375 -5.6125 -2.1511 27 1 2.3277 -3.7580 2.1314 28 1 3.3526 -6.0480 3.0708 29 1 7.3324 -5.5675 2.0934 30 1 6.1090 -4.5402 1.3111 31 1 6.8717 -7.4039 0.6521 32 1 6.8805 -5.9811 -0.4162 33 1 4.7308 -7.6737 -0.2655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260682342.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -11.084263 kcal Electronic energy + Delta-G solvation = -17331.174350 eV Core-core repulsion = 14549.180737 eV Total energy + Delta-G solvation = -2781.993613 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55614 -38.43294 -35.93714 -34.63593 -33.19164 -31.43935 -29.72755 -28.94166 -26.48454 -24.31246 -22.66790 -22.17412 -20.76231 -19.58551 -17.52060 -16.69800 -16.53002 -16.27569 -15.68890 -15.49541 -14.59884 -14.30272 -13.97179 -13.44880 -13.15423 -12.92236 -12.64630 -12.43628 -12.00335 -11.47825 -11.43995 -11.24978 -10.95346 -10.70589 -10.50409 -10.12423 -9.92956 -9.51730 -9.47050 -8.48395 -8.46324 -8.12793 -7.45649 -6.10186 -4.14572 1.65140 1.86876 2.70804 3.26754 3.33578 3.35523 3.37326 3.72864 4.21418 4.43033 4.62627 4.89078 5.02967 5.24418 5.34412 5.51418 5.60833 5.72945 5.77681 5.92186 5.98854 6.09436 6.30574 6.67823 6.85956 6.98245 7.04317 7.24220 7.36629 7.46339 7.67327 7.73425 7.85232 8.04195 8.22938 8.25307 8.90592 9.49868 10.99523 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.005737 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.900486 B = 4879.058732 C = 5129.464229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.021 4.021 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.120 3.880 14 C 0.110 3.890 15 C -0.125 4.125 16 N -0.663 5.663 17 C 0.535 3.465 18 O -0.552 6.552 19 C -0.162 4.162 20 C 0.152 3.848 21 N -0.791 5.791 22 H 0.263 0.737 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.405 0.595 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.729 -11.362 -1.277 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.021 4.021 11 C -0.138 4.138 12 C -0.135 4.135 13 C 0.024 3.976 14 C 0.015 3.985 15 C -0.146 4.146 16 N -0.310 5.310 17 C 0.324 3.676 18 O -0.430 6.430 19 C -0.203 4.203 20 C 0.027 3.973 21 N -0.438 5.438 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.242 0.758 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.035 -11.372 -0.790 14.545 hybrid contribution 0.008 0.718 0.165 0.737 sum 9.043 -10.654 -0.624 13.988 Atomic orbital electron populations 1.69946 1.06041 1.26927 1.50284 1.25000 0.94873 0.99272 0.95088 0.86546 0.79852 0.83159 0.78224 1.20529 1.21142 1.19803 1.21035 0.93051 0.89776 1.51301 0.92410 1.18381 0.92506 0.89460 0.98616 1.20591 0.95696 0.94723 0.91134 1.21084 0.97899 0.96254 0.98563 1.21186 0.98830 0.96758 0.96741 1.17267 0.96079 0.93261 0.90959 1.18092 0.99425 0.96084 0.84902 1.20894 0.99331 0.94976 0.99371 1.43494 1.07754 1.61341 1.18394 1.20592 0.83189 0.77522 0.86305 1.90717 1.80509 1.42021 1.29769 1.22160 0.99035 1.02431 0.96670 1.20961 0.84556 0.98256 0.93564 1.43804 1.07111 1.09014 1.83826 0.92765 0.95021 0.95198 0.85869 0.86311 0.85745 0.75753 0.87835 0.88899 0.90943 0.92541 0.76804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.28 55.43 0.74 -24.86 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.73 9.09 -34.44 -0.31 -14.04 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.05 1.14 5.10 -29.03 -0.15 0.99 16 10 C -0.02 -0.41 5.07 -104.57 -0.53 -0.94 16 11 C -0.12 -2.07 9.68 -39.54 -0.38 -2.45 16 12 C -0.11 -1.70 9.98 -39.45 -0.39 -2.09 16 13 C 0.12 1.75 5.67 -83.52 -0.47 1.27 16 14 C 0.11 1.74 5.54 -83.52 -0.46 1.27 16 15 C -0.13 -2.25 9.64 -39.47 -0.38 -2.63 16 16 N -0.66 -9.78 5.26 -9.73 -0.05 -9.83 16 17 C 0.54 8.17 7.01 -10.91 -0.08 8.10 16 18 O -0.55 -10.00 17.92 5.54 0.10 -9.90 16 19 C -0.16 -2.00 5.46 -27.99 -0.15 -2.15 16 20 C 0.15 1.61 7.01 -4.13 -0.03 1.58 16 21 N -0.79 -9.45 5.20 -58.57 -0.30 -9.75 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 24 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 25 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 26 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 27 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 28 H 0.40 5.50 8.92 -40.82 -0.36 5.13 16 29 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 30 H 0.09 1.22 7.61 -51.93 -0.40 0.83 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.40 4.14 8.96 -40.82 -0.37 3.77 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -30.23 283.54 -7.75 -37.98 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.04 Total: 5.72 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.44 Total: -9.56 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.38 Total: -44.45 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.10 Total: -9.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.23 -7.75 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682342.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.899 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds