Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48499 * 109.47293 * 270.00468 * 3 2 1 5 5 H 1.48504 * 109.46926 * 30.00309 * 3 2 1 6 6 H 1.48500 * 109.46993 * 150.00385 * 3 2 1 7 7 C 1.37873 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99711 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46725 * 179.97438 * 9 7 2 11 11 C 1.38288 * 119.86684 * 270.01522 * 10 9 7 12 12 C 1.38300 * 120.24801 * 179.43867 * 11 10 9 13 13 C 1.38522 * 119.83680 * 0.29199 * 12 11 10 14 14 C 1.39560 * 119.90021 * 0.33650 * 13 12 11 15 15 C 1.38316 * 119.87049 * 90.00269 * 10 9 7 16 16 N 1.40062 * 119.23553 * 177.04701 * 14 13 12 17 17 C 1.35062 * 120.24185 * 49.85478 * 16 14 13 18 18 O 1.21301 * 119.79797 * 184.52818 * 17 16 14 19 19 C 1.50588 * 120.39339 * 4.50556 * 17 16 14 20 20 C 1.52899 * 110.12548 * 284.36320 * 19 17 16 21 21 N 1.40018 * 120.65071 * 181.43397 * 13 12 11 22 22 H 0.97008 * 120.00711 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47331 * 60.00303 * 9 7 2 24 24 H 1.08996 * 109.47317 * 299.99290 * 9 7 2 25 25 H 1.07999 * 119.87696 * 359.46798 * 11 10 9 26 26 H 1.08003 * 120.08098 * 180.30913 * 12 11 10 27 27 H 1.08002 * 120.07854 * 359.90033 * 15 10 9 28 28 H 0.96998 * 119.96507 * 229.68074 * 16 14 13 29 29 H 1.08999 * 109.35855 * 164.15911 * 19 17 16 30 30 H 1.09005 * 109.25308 * 44.50112 * 19 17 16 31 31 H 1.09002 * 109.40900 * 283.56997 * 20 19 17 32 32 H 1.09002 * 109.34009 * 163.76738 * 20 19 17 33 33 H 0.96999 * 120.59556 * 287.55470 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2303 -3.6445 -0.0027 11 6 2.6781 -4.1667 -1.2024 12 6 3.5857 -5.2101 -1.2126 13 6 4.0429 -5.7376 -0.0161 14 6 3.5808 -5.2192 1.1945 15 6 2.6780 -4.1692 1.1962 16 7 4.0040 -5.8035 2.3949 17 6 5.3176 -6.0253 2.6176 18 8 5.6690 -6.6059 3.6229 19 6 6.3483 -5.5564 1.6249 20 6 6.3581 -6.4753 0.4029 21 7 4.9843 -6.7740 -0.0062 22 1 -0.4851 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.3181 -3.7578 -2.1349 26 1 3.9375 -5.6125 -2.1511 27 1 2.3277 -3.7580 2.1314 28 1 3.3526 -6.0480 3.0708 29 1 7.3324 -5.5675 2.0934 30 1 6.1090 -4.5402 1.3111 31 1 6.8717 -7.4039 0.6521 32 1 6.8805 -5.9811 -0.4162 33 1 4.7308 -7.6737 -0.2655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260682342.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -31.167543 kcal Electronic energy + Delta-G solvation = -17332.045226 eV Core-core repulsion = 14549.180737 eV Total energy + Delta-G solvation = -2782.864489 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.77201 -39.75316 -37.17979 -35.85103 -35.06495 -32.86965 -31.00239 -30.39322 -28.02470 -25.69811 -24.23178 -23.50124 -21.96565 -20.84491 -18.69739 -18.48637 -17.89447 -17.65784 -16.90482 -16.66618 -16.39134 -15.60356 -15.17734 -14.77831 -14.50932 -14.40711 -14.03572 -13.61993 -13.44761 -13.26802 -12.91228 -12.64344 -12.48319 -12.31430 -12.10141 -11.67738 -11.52604 -11.25061 -10.87907 -10.58417 -9.67880 -9.42112 -8.68777 -8.17415 -6.30863 0.33614 0.53739 1.41761 1.42308 1.50127 1.53339 2.17244 2.40830 2.72098 2.93218 3.13304 3.51379 3.99902 4.06884 4.13663 4.33131 4.56286 4.58528 4.66849 4.73098 4.84124 4.92718 5.00139 5.29709 5.38380 5.41815 5.51966 5.73473 5.76531 5.89139 6.05896 6.19750 6.20705 6.57407 6.82377 7.03418 7.11609 7.37828 8.90802 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029470 B = 0.005737 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.900486 B = 4879.058732 C = 5129.464229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.055 3.945 10 C -0.049 4.049 11 C -0.122 4.122 12 C -0.100 4.100 13 C 0.137 3.863 14 C 0.113 3.887 15 C -0.133 4.133 16 N -0.661 5.661 17 C 0.532 3.468 18 O -0.583 6.583 19 C -0.161 4.161 20 C 0.152 3.848 21 N -0.787 5.787 22 H 0.265 0.735 23 H 0.010 0.990 24 H 0.003 0.997 25 H 0.124 0.876 26 H 0.152 0.848 27 H 0.113 0.887 28 H 0.408 0.592 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.188 -12.340 -2.220 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.050 4.050 11 C -0.141 4.141 12 C -0.121 4.121 13 C 0.041 3.959 14 C 0.018 3.982 15 C -0.153 4.153 16 N -0.307 5.307 17 C 0.322 3.678 18 O -0.463 6.463 19 C -0.202 4.202 20 C 0.027 3.973 21 N -0.435 5.435 22 H 0.074 0.926 23 H 0.028 0.972 24 H 0.021 0.979 25 H 0.142 0.858 26 H 0.170 0.830 27 H 0.131 0.869 28 H 0.246 0.754 29 H 0.141 0.859 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 11.503 -12.372 -1.744 16.984 hybrid contribution -0.739 0.923 0.489 1.280 sum 10.765 -11.449 -1.254 15.765 Atomic orbital electron populations 1.70068 1.07620 1.27868 1.51464 1.25872 0.95687 1.02953 0.94747 0.85509 0.78610 0.78740 0.78602 1.19540 1.20851 1.19113 1.21389 0.93170 0.91158 1.50652 0.92523 1.18115 0.92905 0.90966 0.96162 1.20194 0.96797 0.94938 0.93036 1.21115 0.98434 0.97083 0.97505 1.21395 0.97274 0.95254 0.98177 1.17341 0.95405 0.92955 0.90224 1.18038 0.98818 0.95487 0.85890 1.20748 1.00298 0.95952 0.98331 1.43523 1.08116 1.60822 1.18230 1.21155 0.83464 0.76783 0.86379 1.90706 1.80851 1.43589 1.31173 1.22262 0.98896 1.02199 0.96810 1.21152 0.83767 0.99239 0.93127 1.43874 1.07183 1.08778 1.83663 0.92644 0.97195 0.97917 0.85829 0.83048 0.86852 0.75435 0.85946 0.89739 0.88614 0.90567 0.75494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 13.28 21.44 0.28 -54.55 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -28.85 9.09 25.60 0.23 -28.62 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.06 2.82 5.10 29.10 0.15 2.97 16 10 C -0.05 -1.97 5.07 -19.83 -0.10 -2.07 16 11 C -0.12 -4.16 9.68 22.30 0.22 -3.94 16 12 C -0.10 -2.69 9.98 22.35 0.22 -2.46 16 13 C 0.14 3.61 5.67 38.22 0.22 3.83 16 14 C 0.11 3.43 5.54 38.20 0.21 3.64 16 15 C -0.13 -4.84 9.64 22.34 0.22 -4.62 16 16 N -0.66 -18.73 5.26 -302.91 -1.59 -20.32 16 17 C 0.53 15.26 7.01 87.58 0.61 15.88 16 18 O -0.58 -20.30 17.92 -3.09 -0.06 -20.36 16 19 C -0.16 -3.48 5.46 29.78 0.16 -3.32 16 20 C 0.15 2.55 7.01 86.36 0.61 3.15 16 21 N -0.79 -15.64 5.20 -339.21 -1.77 -17.41 16 22 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 23 H 0.01 0.52 8.08 -2.39 -0.02 0.51 16 24 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 25 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 26 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 28 H 0.41 10.88 8.92 -92.71 -0.83 10.05 16 29 H 0.12 2.19 8.13 -2.39 -0.02 2.18 16 30 H 0.08 2.01 7.61 -2.38 -0.02 1.99 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.41 6.74 8.96 -92.71 -0.83 5.91 16 Total: -1.00 -66.06 283.54 1.59 -64.47 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -0.52 Total: 17.70 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 3.21 Total: -14.80 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -3.07 Total: -92.28 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.06 1.59 -64.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682342.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.305 kcal (2) G-P(sol) polarization free energy of solvation -66.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds