Wall clock time and date at job start Mon Mar 30 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47388 * 2 1 4 4 C 1.53001 * 109.46996 * 119.99999 * 2 1 3 5 5 H 1.09009 * 109.47107 * 185.97917 * 4 2 1 6 6 C 1.50700 * 109.47209 * 305.97818 * 4 2 1 7 7 H 1.07992 * 120.00165 * 62.31678 * 6 4 2 8 8 C 1.37882 * 119.99805 * 242.31913 * 6 4 2 9 9 N 1.31512 * 119.99593 * 185.52603 * 8 6 4 10 10 Si 1.86800 * 120.00186 * 5.52557 * 8 6 4 11 11 H 1.48503 * 109.46778 * 269.60703 * 10 8 6 12 12 H 1.48501 * 109.46924 * 29.60647 * 10 8 6 13 13 H 1.48490 * 109.47041 * 149.60786 * 10 8 6 14 14 C 1.53001 * 109.47083 * 65.98096 * 4 2 1 15 15 H 1.09006 * 110.00788 * 298.57830 * 14 4 2 16 16 C 1.53881 * 110.02840 * 177.20576 * 14 4 2 17 17 C 1.54190 * 108.69093 * 193.57273 * 16 14 4 18 18 S 1.82917 * 105.10918 * 27.83352 * 17 16 14 19 19 O 1.42107 * 109.35213 * 244.51537 * 18 17 16 20 20 O 1.42096 * 109.47377 * 111.35432 * 18 17 16 21 21 C 1.55045 * 110.02923 * 59.96178 * 14 4 2 22 22 H 1.08997 * 109.47448 * 303.21171 * 1 2 3 23 23 H 1.09003 * 109.46928 * 63.21555 * 1 2 3 24 24 H 1.09008 * 109.46793 * 183.21307 * 1 2 3 25 25 H 1.09008 * 109.47418 * 239.99904 * 2 1 3 26 26 H 1.08998 * 109.47457 * 184.06844 * 3 2 1 27 27 H 1.08997 * 109.47077 * 304.07369 * 3 2 1 28 28 H 1.09003 * 109.46687 * 64.06753 * 3 2 1 29 29 H 0.97001 * 119.99891 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.64332 * 313.38208 * 16 14 4 31 31 H 1.09001 * 109.64668 * 73.67214 * 16 14 4 32 32 H 1.08998 * 110.27123 * 268.94140 * 17 16 14 33 33 H 1.08997 * 110.42626 * 146.80472 * 17 16 14 34 34 H 1.08991 * 110.78999 * 279.99475 * 21 14 4 35 35 H 1.08997 * 110.79152 * 43.46128 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1248 -0.6295 1.3044 6 6 1.4204 -0.1014 2.4753 7 1 0.3498 -0.1320 2.6134 8 6 2.2206 0.5047 3.4205 9 7 1.6938 0.9489 4.5407 10 14 4.0528 0.6948 3.1102 11 1 4.7701 -0.4935 3.6380 12 1 4.2978 0.8129 1.6503 13 1 4.5467 1.9160 3.7955 14 6 1.6563 -2.2006 1.1764 15 1 0.5716 -2.3036 1.1462 16 6 2.2234 -2.9527 2.3932 17 6 2.1233 -4.4683 2.1280 18 16 2.2004 -4.6400 0.3085 19 8 0.9693 -5.1670 -0.1673 20 8 3.4247 -5.2616 -0.0572 21 6 2.2868 -2.8513 -0.0819 22 1 -0.3634 0.5629 0.8598 23 1 -0.3633 0.4631 -0.9174 24 1 -0.3633 -1.0261 0.0576 25 1 1.8934 -0.5139 -0.8900 26 1 3.1276 1.4434 -0.0729 27 1 1.6184 1.9770 -0.8512 28 1 1.7374 1.9348 0.9242 29 1 2.2567 1.3750 5.2058 30 1 3.2670 -2.6752 2.5417 31 1 1.6481 -2.6967 3.2830 32 1 1.1770 -4.8560 2.5050 33 1 2.9585 -4.9919 2.5933 34 1 1.7008 -2.6207 -0.9714 35 1 3.3215 -2.5319 -0.2053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:29 Heat of formation + Delta-G solvation = -93.614478 kcal Electronic energy + Delta-G solvation = -17203.205908 eV Core-core repulsion = 14520.784717 eV Total energy + Delta-G solvation = -2682.421191 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.94152 -36.75483 -35.76598 -34.26935 -32.26382 -29.75850 -27.85352 -26.41211 -24.19534 -23.05896 -20.37478 -18.66295 -18.31966 -17.26291 -16.35088 -16.02693 -15.35138 -14.35408 -14.06505 -13.89640 -13.85205 -13.42206 -13.02473 -12.47110 -12.22918 -11.95108 -11.87159 -11.77699 -11.48016 -11.45829 -11.23533 -10.97336 -10.90412 -10.54823 -10.48624 -10.24959 -9.90695 -9.72099 -9.61340 -9.21079 -8.91207 -8.61004 -6.18627 -4.16645 0.35600 2.80695 3.17207 3.28181 3.30179 3.86861 4.25419 4.30765 4.84754 5.02792 5.10633 5.14904 5.19225 5.49075 5.70445 5.86263 5.87423 5.93246 6.06898 6.09235 6.38652 6.43313 6.53660 6.59845 6.69512 6.72390 6.88377 7.01213 7.09693 7.22281 7.27927 7.67032 8.41274 8.87903 9.44601 10.93854 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025652 B = 0.009132 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.249632 B = 3065.495185 C = 3482.727960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.140 4.140 4 C 0.028 3.972 5 H 0.041 0.959 6 C -0.500 4.500 7 H 0.079 0.921 8 C 0.076 3.924 9 N -0.897 5.897 10 Si 0.860 3.140 11 H -0.277 1.277 12 H -0.257 1.257 13 H -0.290 1.290 14 C -0.075 4.075 15 H 0.089 0.911 16 C -0.099 4.099 17 C -0.587 4.587 18 S 2.366 3.634 19 O -0.951 6.951 20 O -0.958 6.958 21 C -0.577 4.577 22 H 0.069 0.931 23 H 0.029 0.971 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -5.549 -6.157 8.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 C -0.197 4.197 4 C 0.008 3.992 5 H 0.060 0.940 6 C -0.538 4.538 7 H 0.097 0.903 8 C -0.126 4.126 9 N -0.534 5.534 10 Si 0.688 3.312 11 H -0.203 1.203 12 H -0.182 1.182 13 H -0.217 1.217 14 C -0.096 4.096 15 H 0.107 0.893 16 C -0.138 4.138 17 C -0.718 4.718 18 S 2.554 3.446 19 O -0.948 6.948 20 O -0.955 6.955 21 C -0.708 4.708 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.483 -6.312 -6.572 9.232 hybrid contribution 1.081 0.833 0.511 1.457 sum 2.564 -5.479 -6.060 8.563 Atomic orbital electron populations 1.21798 0.96196 1.00854 1.00625 1.21180 0.95596 0.95929 0.97723 1.21797 0.99377 0.97099 1.01449 1.19260 0.96823 0.88278 0.94852 0.94044 1.20895 0.95612 1.35437 1.01882 0.90276 1.25051 0.97714 0.95151 0.94705 1.69891 1.35973 1.40023 1.07538 0.87159 0.86887 0.78041 0.79148 1.20343 1.18202 1.21685 1.22144 1.00310 0.99660 0.87444 0.89281 1.21915 1.03685 0.86655 1.01530 1.30459 1.10912 1.06653 1.23761 1.09643 0.74965 0.79881 0.80154 1.93571 1.44649 1.77665 1.78931 1.93554 1.45357 1.74697 1.81853 1.30728 1.10398 1.21547 1.08138 0.91216 0.95140 0.93679 0.93992 0.94239 0.94788 0.91054 0.92641 0.90761 0.87630 0.85052 0.85288 0.84899 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.56 37.16 0.32 -2.05 16 2 C -0.09 -1.53 2.55 -90.62 -0.23 -1.76 16 3 C -0.14 -2.56 8.92 37.16 0.33 -2.23 16 4 C 0.03 0.54 1.07 -91.77 -0.10 0.45 16 5 H 0.04 0.84 4.62 -51.92 -0.24 0.60 16 6 C -0.50 -11.77 6.08 -34.44 -0.21 -11.97 16 7 H 0.08 2.05 7.08 -52.49 -0.37 1.68 16 8 C 0.08 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -24.91 13.96 55.43 0.77 -24.13 16 10 Si 0.86 19.41 27.03 -169.99 -4.59 14.82 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.26 -5.48 5.65 56.52 0.32 -5.16 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 C -0.08 -1.24 1.88 -89.08 -0.17 -1.41 16 15 H 0.09 1.44 6.63 -51.93 -0.34 1.10 16 16 C -0.10 -1.57 5.29 -25.65 -0.14 -1.71 16 17 C -0.59 -7.49 7.26 37.78 0.27 -7.22 16 18 S 2.37 33.27 6.10 -107.50 -0.66 32.62 16 19 O -0.95 -16.08 18.15 -57.73 -1.05 -17.13 16 20 O -0.96 -16.15 18.15 -57.73 -1.05 -17.19 16 21 C -0.58 -7.95 5.66 38.24 0.22 -7.73 16 22 H 0.07 1.34 6.70 -51.93 -0.35 0.99 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.73 6.50 -51.92 -0.34 0.39 16 25 H 0.04 0.68 6.69 -51.92 -0.35 0.33 16 26 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.46 7.29 -51.93 -0.38 1.09 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.11 1.83 7.85 -51.93 -0.41 1.43 16 32 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.13 1.63 7.57 -51.93 -0.39 1.24 16 35 H 0.13 1.68 8.10 -51.93 -0.42 1.26 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -30.37 281.28 -7.43 -37.80 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.30 Total: 2.79 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 0.20 Total: -33.81 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.77 Total: -24.13 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -2.10 Total: -34.32 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.59 Total: 14.82 kcal Atomic # 16 Polarization: 33.27 SS G_CDS: -0.66 Total: 32.62 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.37 -7.43 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.816 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds