Wall clock time and date at job start Mon Mar 30 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47388 * 2 1 4 4 C 1.53001 * 109.46996 * 119.99999 * 2 1 3 5 5 H 1.09009 * 109.47107 * 185.97917 * 4 2 1 6 6 C 1.50700 * 109.47209 * 305.97818 * 4 2 1 7 7 H 1.07992 * 120.00165 * 62.31678 * 6 4 2 8 8 C 1.37882 * 119.99805 * 242.31913 * 6 4 2 9 9 N 1.31512 * 119.99593 * 185.52603 * 8 6 4 10 10 Si 1.86800 * 120.00186 * 5.52557 * 8 6 4 11 11 H 1.48503 * 109.46778 * 269.60703 * 10 8 6 12 12 H 1.48501 * 109.46924 * 29.60647 * 10 8 6 13 13 H 1.48490 * 109.47041 * 149.60786 * 10 8 6 14 14 C 1.53001 * 109.47083 * 65.98096 * 4 2 1 15 15 H 1.09006 * 110.00788 * 298.57830 * 14 4 2 16 16 C 1.53881 * 110.02840 * 177.20576 * 14 4 2 17 17 C 1.54190 * 108.69093 * 193.57273 * 16 14 4 18 18 S 1.82917 * 105.10918 * 27.83352 * 17 16 14 19 19 O 1.42107 * 109.35213 * 244.51537 * 18 17 16 20 20 O 1.42096 * 109.47377 * 111.35432 * 18 17 16 21 21 C 1.55045 * 110.02923 * 59.96178 * 14 4 2 22 22 H 1.08997 * 109.47448 * 303.21171 * 1 2 3 23 23 H 1.09003 * 109.46928 * 63.21555 * 1 2 3 24 24 H 1.09008 * 109.46793 * 183.21307 * 1 2 3 25 25 H 1.09008 * 109.47418 * 239.99904 * 2 1 3 26 26 H 1.08998 * 109.47457 * 184.06844 * 3 2 1 27 27 H 1.08997 * 109.47077 * 304.07369 * 3 2 1 28 28 H 1.09003 * 109.46687 * 64.06753 * 3 2 1 29 29 H 0.97001 * 119.99891 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.64332 * 313.38208 * 16 14 4 31 31 H 1.09001 * 109.64668 * 73.67214 * 16 14 4 32 32 H 1.08998 * 110.27123 * 268.94140 * 17 16 14 33 33 H 1.08997 * 110.42626 * 146.80472 * 17 16 14 34 34 H 1.08991 * 110.78999 * 279.99475 * 21 14 4 35 35 H 1.08997 * 110.79152 * 43.46128 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1248 -0.6295 1.3044 6 6 1.4204 -0.1014 2.4753 7 1 0.3498 -0.1320 2.6134 8 6 2.2206 0.5047 3.4205 9 7 1.6938 0.9489 4.5407 10 14 4.0528 0.6948 3.1102 11 1 4.7701 -0.4935 3.6380 12 1 4.2978 0.8129 1.6503 13 1 4.5467 1.9160 3.7955 14 6 1.6563 -2.2006 1.1764 15 1 0.5716 -2.3036 1.1462 16 6 2.2234 -2.9527 2.3932 17 6 2.1233 -4.4683 2.1280 18 16 2.2004 -4.6400 0.3085 19 8 0.9693 -5.1670 -0.1673 20 8 3.4247 -5.2616 -0.0572 21 6 2.2868 -2.8513 -0.0819 22 1 -0.3634 0.5629 0.8598 23 1 -0.3633 0.4631 -0.9174 24 1 -0.3633 -1.0261 0.0576 25 1 1.8934 -0.5139 -0.8900 26 1 3.1276 1.4434 -0.0729 27 1 1.6184 1.9770 -0.8512 28 1 1.7374 1.9348 0.9242 29 1 2.2567 1.3750 5.2058 30 1 3.2670 -2.6752 2.5417 31 1 1.6481 -2.6967 3.2830 32 1 1.1770 -4.8560 2.5050 33 1 2.9585 -4.9919 2.5933 34 1 1.7008 -2.6207 -0.9714 35 1 3.3215 -2.5319 -0.2053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:29 Heat of formation + Delta-G solvation = -114.704431 kcal Electronic energy + Delta-G solvation = -17204.120437 eV Core-core repulsion = 14520.784717 eV Total energy + Delta-G solvation = -2683.335720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36381 -37.98999 -37.00503 -35.61388 -34.14542 -30.96518 -29.42152 -27.83271 -25.63651 -24.54907 -21.68759 -20.08457 -19.61609 -18.97463 -17.52986 -17.33329 -16.56761 -16.04414 -15.53715 -15.19514 -15.09734 -14.85388 -14.68268 -13.92242 -13.52486 -13.25931 -13.16103 -13.06580 -12.98978 -12.88941 -12.67803 -12.45460 -12.33696 -12.05830 -11.80880 -11.65490 -11.52555 -11.17478 -11.00748 -10.71565 -10.58916 -10.46122 -8.15400 -6.13641 -0.77158 1.36718 1.43872 1.49161 1.69805 2.43083 2.73465 3.13249 3.23951 3.66166 3.86094 3.97919 4.10225 4.22599 4.40792 4.45718 4.55498 4.75956 4.79509 4.93723 5.00842 5.02901 5.15431 5.18149 5.30944 5.37723 5.44755 5.52047 5.61041 5.69485 5.78392 5.95119 6.48972 6.93832 7.50084 9.00927 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025652 B = 0.009132 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.249632 B = 3065.495185 C = 3482.727960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.022 3.978 5 H 0.041 0.959 6 C -0.474 4.474 7 H 0.043 0.957 8 C 0.022 3.978 9 N -0.952 5.952 10 Si 0.905 3.095 11 H -0.268 1.268 12 H -0.233 1.233 13 H -0.306 1.306 14 C -0.080 4.080 15 H 0.089 0.911 16 C -0.105 4.105 17 C -0.574 4.574 18 S 2.392 3.608 19 O -0.978 6.978 20 O -0.982 6.982 21 C -0.570 4.570 22 H 0.037 0.963 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.258 0.742 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 -6.739 -8.314 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.198 4.198 4 C 0.002 3.998 5 H 0.059 0.941 6 C -0.512 4.512 7 H 0.062 0.938 8 C -0.175 4.175 9 N -0.594 5.594 10 Si 0.731 3.269 11 H -0.194 1.194 12 H -0.156 1.156 13 H -0.233 1.233 14 C -0.100 4.100 15 H 0.108 0.892 16 C -0.143 4.143 17 C -0.705 4.705 18 S 2.582 3.418 19 O -0.975 6.975 20 O -0.979 6.979 21 C -0.702 4.702 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.513 -7.524 -8.772 11.827 hybrid contribution 0.664 1.204 1.165 1.802 sum 3.177 -6.320 -7.607 10.388 Atomic orbital electron populations 1.21752 0.95910 1.01190 1.00363 1.21226 0.95904 0.95727 0.97920 1.21788 0.99718 0.97442 1.00815 1.19297 0.96457 0.90251 0.93748 0.94093 1.21065 0.93931 1.33462 1.02781 0.93834 1.25690 1.01448 0.95697 0.94615 1.70043 1.37332 1.42916 1.09096 0.86410 0.82672 0.77517 0.80254 1.19384 1.15582 1.23334 1.22001 1.00761 0.97817 0.89398 0.89244 1.21870 1.03171 0.88844 1.00459 1.30376 1.12939 1.04555 1.22620 1.08760 0.73553 0.79400 0.80114 1.93538 1.45708 1.78457 1.79829 1.93525 1.46260 1.75466 1.82626 1.30691 1.11642 1.20524 1.07350 0.94378 0.92864 0.92742 0.90724 0.93888 0.92420 0.94317 0.93258 0.90761 0.89937 0.83470 0.83053 0.82785 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.56 71.98 0.62 -3.77 16 2 C -0.09 -2.94 2.55 -10.79 -0.03 -2.97 16 3 C -0.14 -4.82 8.92 71.98 0.64 -4.18 16 4 C 0.02 0.83 1.07 -11.54 -0.01 0.82 16 5 H 0.04 1.54 4.62 -2.38 -0.01 1.53 16 6 C -0.47 -22.60 6.08 25.60 0.16 -22.45 16 7 H 0.04 2.35 7.08 -2.91 -0.02 2.33 16 8 C 0.02 1.13 5.47 84.66 0.46 1.59 16 9 N -0.95 -55.19 13.96 21.45 0.30 -54.89 16 10 Si 0.91 39.73 27.03 68.60 1.85 41.58 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.23 -9.15 5.65 99.48 0.56 -8.59 16 13 H -0.31 -14.14 7.11 99.48 0.71 -13.43 16 14 C -0.08 -2.44 1.88 -9.80 -0.02 -2.46 16 15 H 0.09 2.73 6.63 -2.38 -0.02 2.72 16 16 C -0.10 -3.13 5.29 31.29 0.17 -2.96 16 17 C -0.57 -12.99 7.26 72.39 0.53 -12.47 16 18 S 2.39 59.96 6.10 -56.49 -0.34 59.62 16 19 O -0.98 -30.51 18.15 -127.47 -2.31 -32.82 16 20 O -0.98 -30.16 18.15 -127.47 -2.31 -32.47 16 21 C -0.57 -13.49 5.66 72.68 0.41 -13.08 16 22 H 0.04 1.46 6.70 -2.39 -0.02 1.44 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.64 6.50 -2.38 -0.02 1.62 16 25 H 0.07 2.04 6.69 -2.38 -0.02 2.02 16 26 H 0.04 1.42 7.31 -2.39 -0.02 1.40 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.56 7.29 -2.39 -0.02 1.54 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.65 16 30 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 31 H 0.08 2.85 7.85 -2.39 -0.02 2.83 16 32 H 0.15 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.15 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.15 3.04 7.57 -2.39 -0.02 3.02 16 35 H 0.15 3.11 8.10 -2.39 -0.02 3.09 16 Total: -1.00 -66.32 281.28 1.03 -65.30 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.92 Total: 15.61 kcal Atomic # 6 Polarization: -64.85 SS G_CDS: 2.92 Total: -61.93 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.30 Total: -54.89 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -4.63 Total: -65.29 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.85 Total: 41.58 kcal Atomic # 16 Polarization: 59.96 SS G_CDS: -0.34 Total: 59.62 kcal Total: -66.32 1.03 -65.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.406 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds