Wall clock time and date at job start Mon Mar 30 2020 03:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47383 * 120.00138 * 2 1 3 5 5 H 1.09007 * 109.46913 * 185.70712 * 4 2 1 6 6 C 1.50690 * 109.47251 * 305.71170 * 4 2 1 7 7 H 1.08005 * 120.00092 * 84.66180 * 6 4 2 8 8 C 1.37874 * 120.00434 * 264.65476 * 6 4 2 9 9 N 1.31524 * 119.99681 * 4.47300 * 8 6 4 10 10 Si 1.86799 * 120.00395 * 184.46644 * 8 6 4 11 11 H 1.48502 * 109.46703 * 90.00482 * 10 8 6 12 12 H 1.48504 * 109.47048 * 210.00311 * 10 8 6 13 13 H 1.48494 * 109.47305 * 330.00543 * 10 8 6 14 14 C 1.52997 * 109.46851 * 65.71705 * 4 2 1 15 15 H 1.09005 * 110.01327 * 302.51300 * 14 4 2 16 16 C 1.53873 * 110.07601 * 63.92301 * 14 4 2 17 17 C 1.54634 * 108.71733 * 166.58468 * 16 14 4 18 18 S 1.82910 * 104.88321 * 331.97683 * 17 16 14 19 19 O 1.42104 * 109.35901 * 248.75775 * 18 17 16 20 20 O 1.42103 * 109.35324 * 115.68848 * 18 17 16 21 21 C 1.55055 * 110.02752 * 181.13688 * 14 4 2 22 22 H 1.09000 * 109.47243 * 296.63216 * 1 2 3 23 23 H 1.08994 * 109.47775 * 56.63382 * 1 2 3 24 24 H 1.09002 * 109.46964 * 176.63737 * 1 2 3 25 25 H 1.08999 * 109.47013 * 240.00507 * 2 1 3 26 26 H 1.08999 * 109.46823 * 61.72035 * 3 2 1 27 27 H 1.08996 * 109.47112 * 181.72497 * 3 2 1 28 28 H 1.08998 * 109.47178 * 301.72689 * 3 2 1 29 29 H 0.96993 * 119.99975 * 179.97438 * 9 8 6 30 30 H 1.09006 * 109.64062 * 286.34765 * 16 14 4 31 31 H 1.09003 * 109.64550 * 46.76686 * 16 14 4 32 32 H 1.09001 * 110.38843 * 213.15727 * 17 16 14 33 33 H 1.08999 * 110.44756 * 90.83249 * 17 16 14 34 34 H 1.09006 * 110.78722 * 79.95518 * 21 14 4 35 35 H 1.09000 * 110.95237 * 316.57239 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1253 -0.6335 1.3017 6 6 1.4257 -0.0973 2.4755 7 1 0.4492 -0.4142 2.8112 8 6 2.1099 0.8781 3.1693 9 7 3.2587 1.3267 2.7122 10 14 1.4055 1.5626 4.7582 11 1 1.8938 0.7547 5.9045 12 1 1.8404 2.9727 4.9254 13 1 -0.0774 1.5046 4.7077 14 6 1.6507 -2.1992 1.1793 15 1 0.5694 -2.2960 1.0816 16 6 2.3501 -2.8738 -0.0138 17 6 2.2168 -4.4072 0.1351 18 16 2.0931 -4.6952 1.9372 19 8 3.2702 -5.3489 2.3916 20 8 0.8175 -5.2433 2.2400 21 6 2.1368 -2.9372 2.4534 22 1 -0.3634 0.4607 0.9186 23 1 -0.3634 0.5651 -0.8582 24 1 -0.3633 -1.0259 -0.0603 25 1 1.8933 -0.5138 -0.8900 26 1 1.7020 1.9473 0.9050 27 1 3.1295 1.4427 -0.0309 28 1 1.6516 1.9652 -0.8741 29 1 3.7400 2.0132 3.2000 30 1 1.8784 -2.5549 -0.9432 31 1 3.4045 -2.5976 -0.0245 32 1 3.0982 -4.9059 -0.2682 33 1 1.3171 -4.7618 -0.3676 34 1 1.4555 -2.7613 3.2860 35 1 3.1511 -2.6359 2.7153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:34 Heat of formation + Delta-G solvation = -95.203940 kcal Electronic energy + Delta-G solvation = -17136.420364 eV Core-core repulsion = 14453.930249 eV Total energy + Delta-G solvation = -2682.490115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.75120 -36.63323 -35.64049 -34.15419 -31.98458 -29.89363 -26.80933 -26.03124 -25.03692 -22.56242 -20.44461 -18.66017 -18.26685 -16.67398 -16.08945 -15.73785 -15.28590 -14.53309 -14.12213 -13.87973 -13.67541 -12.95550 -12.81872 -12.29562 -12.00268 -11.81519 -11.69566 -11.53670 -11.43793 -11.25981 -11.02970 -10.81836 -10.74686 -10.51130 -10.34915 -10.08660 -9.94506 -9.90305 -9.23297 -9.00388 -8.75315 -8.43470 -6.09061 -4.10656 0.48192 2.94330 3.24808 3.33326 3.35883 3.97774 4.34829 4.36986 4.83746 5.09209 5.18206 5.26786 5.33630 5.57020 5.77941 6.02527 6.08900 6.13917 6.18775 6.27029 6.51387 6.57061 6.65513 6.75682 6.81495 7.09168 7.16655 7.36750 7.47531 7.67669 7.80143 7.86702 8.33584 8.95692 9.51992 10.98920 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.008841 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.538422 B = 3166.389883 C = 3794.589415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.117 4.117 4 C 0.057 3.943 5 H 0.062 0.938 6 C -0.504 4.504 7 H 0.055 0.945 8 C 0.068 3.932 9 N -0.884 5.884 10 Si 0.880 3.120 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.082 4.082 15 H 0.080 0.920 16 C -0.112 4.112 17 C -0.593 4.593 18 S 2.359 3.641 19 O -0.958 6.958 20 O -0.954 6.954 21 C -0.536 4.536 22 H 0.067 0.933 23 H 0.026 0.974 24 H 0.036 0.964 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.010 0.990 29 H 0.260 0.740 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -5.617 -5.445 7.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.175 4.175 4 C 0.038 3.962 5 H 0.080 0.920 6 C -0.542 4.542 7 H 0.073 0.927 8 C -0.134 4.134 9 N -0.522 5.522 10 Si 0.709 3.291 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.102 4.102 15 H 0.098 0.902 16 C -0.151 4.151 17 C -0.722 4.722 18 S 2.547 3.453 19 O -0.955 6.955 20 O -0.951 6.951 21 C -0.668 4.668 22 H 0.086 0.914 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.416 -6.387 -4.873 8.157 hybrid contribution -0.283 1.111 0.413 1.218 sum -1.700 -5.276 -4.461 7.115 Atomic orbital electron populations 1.21811 0.97254 0.99508 1.00841 1.21227 0.94468 0.96939 0.97642 1.21562 1.00235 0.95997 0.99661 1.18888 0.98844 0.85468 0.93018 0.91976 1.20942 1.03208 1.20369 1.09680 0.92675 1.24882 0.94967 0.96517 0.97052 1.69958 1.14701 1.29045 1.38534 0.86780 0.79498 0.78342 0.84528 1.20732 1.21405 1.19950 1.22118 0.99814 1.00585 0.87695 0.90157 1.22227 1.03251 0.88246 1.01355 1.30525 1.10526 1.06262 1.24931 1.09778 0.74972 0.80663 0.79915 1.93554 1.48812 1.73989 1.79159 1.93563 1.41171 1.77556 1.82832 1.30380 1.11567 1.17198 1.07690 0.91436 0.95507 0.94485 0.95037 0.90935 0.93486 0.97045 0.93014 0.89608 0.90043 0.85415 0.85440 0.84400 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.63 37.16 0.32 -2.15 16 2 C -0.08 -1.62 2.57 -90.62 -0.23 -1.85 16 3 C -0.12 -2.44 8.12 37.16 0.30 -2.14 16 4 C 0.06 1.19 1.26 -91.78 -0.12 1.07 16 5 H 0.06 1.44 7.36 -51.92 -0.38 1.06 16 6 C -0.50 -11.80 5.43 -34.45 -0.19 -11.99 16 7 H 0.06 1.31 7.67 -52.48 -0.40 0.90 16 8 C 0.07 1.68 4.52 -17.82 -0.08 1.60 16 9 N -0.88 -22.74 11.37 55.43 0.63 -22.11 16 10 Si 0.88 19.87 29.54 -169.99 -5.02 14.85 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 14 C -0.08 -1.39 1.96 -89.08 -0.17 -1.56 16 15 H 0.08 1.33 6.59 -51.93 -0.34 0.98 16 16 C -0.11 -1.55 5.12 -25.42 -0.13 -1.68 16 17 C -0.59 -7.12 7.29 38.02 0.28 -6.84 16 18 S 2.36 35.36 6.09 -107.50 -0.66 34.70 16 19 O -0.96 -17.20 18.15 -57.73 -1.05 -18.25 16 20 O -0.95 -17.11 18.15 -57.73 -1.05 -18.16 16 21 C -0.54 -8.74 5.99 38.24 0.23 -8.51 16 22 H 0.07 1.34 6.83 -51.93 -0.35 0.98 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.60 6.70 -51.93 -0.35 0.25 16 25 H 0.03 0.55 6.65 -51.93 -0.35 0.21 16 26 H 0.07 1.69 6.11 -51.93 -0.32 1.38 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.09 1.10 7.20 -51.93 -0.37 0.73 16 31 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.13 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.14 2.27 8.04 -51.93 -0.42 1.85 16 35 H 0.14 2.26 8.11 -51.93 -0.42 1.84 16 LS Contribution 283.88 15.07 4.28 4.28 Total: -1.00 -29.43 283.88 -8.03 -37.46 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.37 Total: 1.28 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 0.21 Total: -34.04 kcal Atomic # 7 Polarization: -22.74 SS G_CDS: 0.63 Total: -22.11 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -2.09 Total: -36.41 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 35.36 SS G_CDS: -0.66 Total: 34.70 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.43 -8.03 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.744 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds