Wall clock time and date at job start Mon Mar 30 2020 03:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47383 * 120.00138 * 2 1 3 5 5 H 1.09007 * 109.46913 * 185.70712 * 4 2 1 6 6 C 1.50690 * 109.47251 * 305.71170 * 4 2 1 7 7 H 1.08005 * 120.00092 * 84.66180 * 6 4 2 8 8 C 1.37874 * 120.00434 * 264.65476 * 6 4 2 9 9 N 1.31524 * 119.99681 * 4.47300 * 8 6 4 10 10 Si 1.86799 * 120.00395 * 184.46644 * 8 6 4 11 11 H 1.48502 * 109.46703 * 90.00482 * 10 8 6 12 12 H 1.48504 * 109.47048 * 210.00311 * 10 8 6 13 13 H 1.48494 * 109.47305 * 330.00543 * 10 8 6 14 14 C 1.52997 * 109.46851 * 65.71705 * 4 2 1 15 15 H 1.09005 * 110.01327 * 302.51300 * 14 4 2 16 16 C 1.53873 * 110.07601 * 63.92301 * 14 4 2 17 17 C 1.54634 * 108.71733 * 166.58468 * 16 14 4 18 18 S 1.82910 * 104.88321 * 331.97683 * 17 16 14 19 19 O 1.42104 * 109.35901 * 248.75775 * 18 17 16 20 20 O 1.42103 * 109.35324 * 115.68848 * 18 17 16 21 21 C 1.55055 * 110.02752 * 181.13688 * 14 4 2 22 22 H 1.09000 * 109.47243 * 296.63216 * 1 2 3 23 23 H 1.08994 * 109.47775 * 56.63382 * 1 2 3 24 24 H 1.09002 * 109.46964 * 176.63737 * 1 2 3 25 25 H 1.08999 * 109.47013 * 240.00507 * 2 1 3 26 26 H 1.08999 * 109.46823 * 61.72035 * 3 2 1 27 27 H 1.08996 * 109.47112 * 181.72497 * 3 2 1 28 28 H 1.08998 * 109.47178 * 301.72689 * 3 2 1 29 29 H 0.96993 * 119.99975 * 179.97438 * 9 8 6 30 30 H 1.09006 * 109.64062 * 286.34765 * 16 14 4 31 31 H 1.09003 * 109.64550 * 46.76686 * 16 14 4 32 32 H 1.09001 * 110.38843 * 213.15727 * 17 16 14 33 33 H 1.08999 * 110.44756 * 90.83249 * 17 16 14 34 34 H 1.09006 * 110.78722 * 79.95518 * 21 14 4 35 35 H 1.09000 * 110.95237 * 316.57239 * 21 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1253 -0.6335 1.3017 6 6 1.4257 -0.0973 2.4755 7 1 0.4492 -0.4142 2.8112 8 6 2.1099 0.8781 3.1693 9 7 3.2587 1.3267 2.7122 10 14 1.4055 1.5626 4.7582 11 1 1.8938 0.7547 5.9045 12 1 1.8404 2.9727 4.9254 13 1 -0.0774 1.5046 4.7077 14 6 1.6507 -2.1992 1.1793 15 1 0.5694 -2.2960 1.0816 16 6 2.3501 -2.8738 -0.0138 17 6 2.2168 -4.4072 0.1351 18 16 2.0931 -4.6952 1.9372 19 8 3.2702 -5.3489 2.3916 20 8 0.8175 -5.2433 2.2400 21 6 2.1368 -2.9372 2.4534 22 1 -0.3634 0.4607 0.9186 23 1 -0.3634 0.5651 -0.8582 24 1 -0.3633 -1.0259 -0.0603 25 1 1.8933 -0.5138 -0.8900 26 1 1.7020 1.9473 0.9050 27 1 3.1295 1.4427 -0.0309 28 1 1.6516 1.9652 -0.8741 29 1 3.7400 2.0132 3.2000 30 1 1.8784 -2.5549 -0.9432 31 1 3.4045 -2.5976 -0.0245 32 1 3.0982 -4.9059 -0.2682 33 1 1.3171 -4.7618 -0.3676 34 1 1.4555 -2.7613 3.2860 35 1 3.1511 -2.6359 2.7153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:34 Heat of formation + Delta-G solvation = -114.574856 kcal Electronic energy + Delta-G solvation = -17137.260350 eV Core-core repulsion = 14453.930249 eV Total energy + Delta-G solvation = -2683.330101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.19672 -37.95870 -36.96953 -35.56706 -33.78552 -31.15854 -28.39781 -27.57771 -26.53195 -23.99863 -21.82183 -20.14534 -19.58219 -18.23459 -17.40122 -17.19288 -16.58431 -16.32488 -15.45047 -15.30337 -14.88284 -14.49896 -14.32839 -13.76735 -13.47926 -13.18441 -13.05683 -13.02654 -12.87131 -12.71767 -12.70216 -12.40908 -12.32986 -11.97629 -11.77410 -11.63065 -11.39708 -11.31634 -10.81517 -10.56236 -10.40437 -10.27594 -7.99698 -6.01725 -0.72511 1.40063 1.46203 1.50274 1.76206 2.49101 2.78700 3.18656 3.31343 3.74095 3.95830 4.04149 4.18431 4.29491 4.59568 4.62932 4.70011 4.86306 4.88720 5.01421 5.10682 5.22966 5.26216 5.34697 5.36623 5.47265 5.61379 5.75053 5.83128 5.93594 6.07660 6.13995 6.54100 7.11497 7.61177 9.07324 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.008841 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.538422 B = 3166.389883 C = 3794.589415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.111 4.111 4 C 0.055 3.945 5 H 0.032 0.968 6 C -0.495 4.495 7 H 0.049 0.951 8 C 0.027 3.973 9 N -0.909 5.909 10 Si 0.919 3.081 11 H -0.284 1.284 12 H -0.294 1.294 13 H -0.272 1.272 14 C -0.085 4.085 15 H 0.088 0.912 16 C -0.112 4.112 17 C -0.559 4.559 18 S 2.379 3.621 19 O -0.990 6.990 20 O -0.984 6.984 21 C -0.550 4.550 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.028 0.972 28 H 0.032 0.968 29 H 0.254 0.746 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.126 0.874 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -6.924 -7.638 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 C -0.168 4.168 4 C 0.036 3.964 5 H 0.050 0.950 6 C -0.534 4.534 7 H 0.067 0.933 8 C -0.172 4.172 9 N -0.549 5.549 10 Si 0.748 3.252 11 H -0.211 1.211 12 H -0.220 1.220 13 H -0.197 1.197 14 C -0.105 4.105 15 H 0.106 0.894 16 C -0.151 4.151 17 C -0.692 4.692 18 S 2.569 3.431 19 O -0.987 6.987 20 O -0.981 6.981 21 C -0.681 4.681 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.145 0.855 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.223 -7.692 -7.018 10.647 hybrid contribution -0.056 1.521 1.047 1.847 sum -2.278 -6.171 -5.971 8.884 Atomic orbital electron populations 1.21744 0.95990 1.00885 1.00355 1.21208 0.95484 0.95764 0.97854 1.21469 0.99053 0.97317 0.99000 1.18801 0.96799 0.88187 0.92633 0.94994 1.21230 1.02577 1.19281 1.10322 0.93317 1.25347 0.95475 0.97431 0.98959 1.70053 1.15699 1.29851 1.39294 0.86160 0.78998 0.77445 0.82601 1.21077 1.22006 1.19721 1.22051 1.00662 0.98336 0.89423 0.89389 1.22211 1.03306 0.89096 1.00476 1.30330 1.13569 1.05112 1.20222 1.09080 0.73463 0.78872 0.81643 1.93510 1.49802 1.74247 1.81119 1.93520 1.42363 1.77706 1.84489 1.30405 1.10638 1.19411 1.07672 0.94002 0.93651 0.92458 0.92229 0.94155 0.95304 0.94855 0.93687 0.87321 0.89796 0.82430 0.82442 0.85522 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.63 71.98 0.62 -3.80 16 2 C -0.08 -3.08 2.57 -10.79 -0.03 -3.10 16 3 C -0.11 -4.55 8.12 71.98 0.58 -3.96 16 4 C 0.06 2.25 1.26 -11.54 -0.01 2.24 16 5 H 0.03 1.49 7.36 -2.38 -0.02 1.47 16 6 C -0.50 -23.44 5.43 25.60 0.14 -23.30 16 7 H 0.05 2.32 7.67 -2.91 -0.02 2.30 16 8 C 0.03 1.35 4.52 84.65 0.38 1.73 16 9 N -0.91 -48.20 11.37 21.45 0.24 -47.95 16 10 Si 0.92 41.63 29.54 68.60 2.03 43.66 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C -0.08 -2.69 1.96 -9.80 -0.02 -2.71 16 15 H 0.09 2.66 6.59 -2.38 -0.02 2.64 16 16 C -0.11 -2.64 5.12 31.45 0.16 -2.48 16 17 C -0.56 -10.70 7.29 72.54 0.53 -10.17 16 18 S 2.38 67.04 6.09 -56.49 -0.34 66.69 16 19 O -0.99 -34.40 18.15 -127.47 -2.31 -36.71 16 20 O -0.98 -33.71 18.15 -127.47 -2.31 -36.03 16 21 C -0.55 -17.78 5.99 72.69 0.44 -17.34 16 22 H 0.04 1.60 6.83 -2.39 -0.02 1.58 16 23 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.66 6.70 -2.39 -0.02 1.65 16 25 H 0.06 1.86 6.65 -2.39 -0.02 1.85 16 26 H 0.04 1.89 6.11 -2.39 -0.01 1.88 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.25 13.29 8.31 -92.71 -0.77 12.51 16 30 H 0.11 2.16 7.20 -2.38 -0.02 2.14 16 31 H 0.08 1.98 8.10 -2.39 -0.02 1.97 16 32 H 0.16 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.13 4.28 8.04 -2.38 -0.02 4.26 16 35 H 0.13 4.28 8.11 -2.39 -0.02 4.26 16 Total: -1.00 -64.03 283.88 1.15 -62.88 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.06 Total: 10.36 kcal Atomic # 6 Polarization: -65.70 SS G_CDS: 2.79 Total: -62.90 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.24 Total: -47.95 kcal Atomic # 8 Polarization: -68.12 SS G_CDS: -4.63 Total: -72.74 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 67.04 SS G_CDS: -0.34 Total: 66.69 kcal Total: -64.03 1.15 -62.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.696 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds