Wall clock time and date at job start Mon Mar 30 2020 03:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46998 * 2 1 4 4 C 1.53006 * 109.47128 * 119.99939 * 2 1 3 5 5 H 1.09003 * 109.46970 * 304.72373 * 4 2 1 6 6 C 1.50696 * 109.46839 * 64.72453 * 4 2 1 7 7 H 1.07998 * 120.00555 * 54.56698 * 6 4 2 8 8 C 1.37880 * 120.00036 * 234.56736 * 6 4 2 9 9 N 1.31507 * 120.00317 * 184.82338 * 8 6 4 10 10 Si 1.86801 * 119.99821 * 4.82266 * 8 6 4 11 11 H 1.48496 * 109.47227 * 84.74007 * 10 8 6 12 12 H 1.48500 * 109.47274 * 204.74099 * 10 8 6 13 13 H 1.48504 * 109.47271 * 324.74074 * 10 8 6 14 14 C 1.52999 * 109.47194 * 184.72223 * 4 2 1 15 15 H 1.09008 * 110.28040 * 59.30071 * 14 4 2 16 16 C 1.54157 * 110.32273 * 181.41451 * 14 4 2 17 17 C 1.53869 * 108.70869 * 146.90957 * 16 14 4 18 18 C 1.55048 * 106.62526 * 312.82458 * 17 16 14 19 19 S 1.82916 * 110.40417 * 297.13071 * 14 4 2 20 20 O 1.42101 * 109.35344 * 352.32360 * 19 14 4 21 21 O 1.42100 * 109.35530 * 125.52982 * 19 14 4 22 22 H 1.09001 * 109.47038 * 304.93629 * 1 2 3 23 23 H 1.08995 * 109.46940 * 64.93983 * 1 2 3 24 24 H 1.09000 * 109.46737 * 184.94076 * 1 2 3 25 25 H 1.08997 * 109.47575 * 239.99944 * 2 1 3 26 26 H 1.09003 * 109.46760 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47279 * 299.99856 * 3 2 1 28 28 H 1.09003 * 109.46984 * 60.00052 * 3 2 1 29 29 H 0.97003 * 119.99944 * 179.97438 * 9 8 6 30 30 H 1.08996 * 109.64941 * 266.76941 * 16 14 4 31 31 H 1.09003 * 109.64612 * 27.05959 * 16 14 4 32 32 H 1.09003 * 110.02735 * 72.11350 * 17 16 14 33 33 H 1.08997 * 110.03299 * 193.48227 * 17 16 14 34 34 H 1.09002 * 110.79110 * 160.70044 * 18 17 16 35 35 H 1.09004 * 110.78761 * 283.97048 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.6092 -0.2586 2.1373 6 6 1.6355 -2.1718 1.1921 7 1 1.8971 -2.7720 0.3332 8 6 0.9314 -2.7328 2.2364 9 7 0.6608 -4.0197 2.2308 10 14 0.3620 -1.6648 3.6593 11 1 -0.9318 -1.0247 3.3109 12 1 0.1878 -2.5059 4.8707 13 1 1.3774 -0.6149 3.9275 14 6 3.5654 -0.6192 1.3101 15 1 3.8733 0.4260 1.3394 16 6 4.1035 -1.3705 2.5440 17 6 5.4778 -1.9692 2.1968 18 6 5.3225 -2.6682 0.8216 19 16 4.3188 -1.4633 -0.1272 20 8 3.3095 -2.1560 -0.8487 21 8 5.1825 -0.5605 -0.8040 22 1 -0.3633 0.5885 0.8425 23 1 -0.3633 0.4353 -0.9309 24 1 -0.3633 -1.0239 0.0885 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 0.1657 -4.4144 2.9657 30 1 4.2060 -0.6776 3.3791 31 1 3.4139 -2.1696 2.8161 32 1 6.2240 -1.1773 2.1309 33 1 5.7708 -2.6956 2.9547 34 1 6.2946 -2.8173 0.3515 35 1 4.7960 -3.6168 0.9271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260708424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:19 Heat of formation + Delta-G solvation = -84.235524 kcal Electronic energy + Delta-G solvation = -17814.976185 eV Core-core repulsion = 15132.961696 eV Total energy + Delta-G solvation = -2682.014489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.48165 -36.22861 -35.39528 -34.55656 -32.30959 -30.09639 -27.23079 -26.21621 -24.29760 -22.29468 -20.48698 -19.12203 -17.89594 -17.40847 -15.99194 -15.59611 -14.80697 -14.42069 -13.99095 -13.67696 -13.50917 -13.25941 -12.78883 -12.39473 -12.35039 -12.00668 -11.59313 -11.40402 -11.33199 -11.28767 -11.16936 -10.97025 -10.75244 -10.38407 -10.28605 -9.92690 -9.88734 -9.70425 -9.51320 -9.19084 -8.67331 -8.44176 -6.10019 -4.11701 0.87557 3.21323 3.29459 3.33022 3.35050 4.28262 4.37468 4.72682 4.97121 5.10434 5.25829 5.35261 5.42485 5.62376 5.76000 5.81952 5.86673 5.95035 6.06099 6.17144 6.23669 6.37784 6.42738 6.50394 6.55705 6.74806 6.79358 6.91029 7.07813 7.29745 7.31618 7.68254 8.50916 9.22657 9.52085 11.00706 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.013383 C = 0.010701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.252619 B = 2091.710507 C = 2615.906719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.113 4.113 3 C -0.161 4.161 4 C 0.039 3.961 5 H 0.054 0.946 6 C -0.529 4.529 7 H 0.122 0.878 8 C 0.082 3.918 9 N -0.891 5.891 10 Si 0.854 3.146 11 H -0.274 1.274 12 H -0.291 1.291 13 H -0.262 1.262 14 C -0.524 4.524 15 H 0.116 0.884 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.594 4.594 19 S 2.380 3.620 20 O -0.910 6.910 21 O -0.972 6.972 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 5.712 0.919 8.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.131 4.131 3 C -0.218 4.218 4 C 0.019 3.981 5 H 0.072 0.928 6 C -0.567 4.567 7 H 0.139 0.861 8 C -0.121 4.121 9 N -0.528 5.528 10 Si 0.682 3.318 11 H -0.200 1.200 12 H -0.217 1.217 13 H -0.187 1.187 14 C -0.636 4.636 15 H 0.134 0.866 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.722 4.722 19 S 2.565 3.435 20 O -0.907 6.907 21 O -0.969 6.969 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.499 5.682 0.022 8.633 hybrid contribution -0.244 0.442 1.797 1.867 sum 6.255 6.124 1.819 8.941 Atomic orbital electron populations 1.21639 0.95173 1.02984 0.98947 1.21567 0.97103 0.93646 1.00833 1.22124 1.00437 0.98246 1.00979 1.19093 0.85563 0.98243 0.95188 0.92762 1.21775 1.35541 0.92768 1.06581 0.86101 1.25106 0.95379 0.94407 0.97159 1.69893 1.39948 1.10562 1.32407 0.87244 0.80205 0.81304 0.83066 1.19976 1.21737 1.18698 1.30364 1.10841 1.08358 1.14074 0.86645 1.22088 0.95524 1.01136 0.96452 1.22137 0.98412 0.99654 0.95110 1.30602 1.14347 1.16605 1.10670 1.09383 0.76604 0.78249 0.79238 1.93603 1.54806 1.72463 1.69867 1.93506 1.67469 1.63574 1.72395 0.94412 0.94504 0.90563 0.90404 0.93312 0.93400 0.93073 0.92617 0.90900 0.87288 0.90990 0.89519 0.86342 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.08 37.16 0.34 -2.23 16 2 C -0.11 -2.28 2.20 -90.61 -0.20 -2.48 16 3 C -0.16 -2.73 8.73 37.16 0.32 -2.41 16 4 C 0.04 0.84 1.20 -91.77 -0.11 0.73 16 5 H 0.05 1.18 4.52 -51.93 -0.23 0.94 16 6 C -0.53 -13.26 5.60 -34.44 -0.19 -13.46 16 7 H 0.12 3.38 5.50 -52.49 -0.29 3.09 16 8 C 0.08 2.14 4.87 -17.82 -0.09 2.06 16 9 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 10 Si 0.85 19.74 26.90 -169.99 -4.57 15.16 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.26 -5.66 6.39 56.52 0.36 -5.30 16 14 C -0.52 -9.66 2.55 -26.13 -0.07 -9.72 16 15 H 0.12 1.86 6.36 -51.92 -0.33 1.53 16 16 C -0.11 -1.92 5.80 -25.67 -0.15 -2.07 16 17 C -0.11 -1.62 6.48 -25.20 -0.16 -1.78 16 18 C -0.59 -9.21 7.31 38.24 0.28 -8.93 16 19 S 2.38 45.22 5.18 -107.50 -0.56 44.67 16 20 O -0.91 -20.64 12.72 -57.71 -0.73 -21.38 16 21 O -0.97 -19.77 18.15 -57.71 -1.05 -20.82 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 1.68 7.22 -51.93 -0.37 1.30 16 25 H 0.08 1.68 5.91 -51.93 -0.31 1.37 16 26 H 0.05 0.79 6.34 -51.93 -0.33 0.46 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.11 2.13 5.84 -51.93 -0.30 1.82 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.14 2.26 8.14 -51.93 -0.42 1.83 16 LS Contribution 274.59 15.07 4.14 4.14 Total: -1.00 -30.32 274.59 -7.17 -37.49 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.15 Total: 5.46 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: -0.03 Total: -40.29 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.77 Total: -24.44 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -1.78 Total: -42.20 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.57 Total: 15.16 kcal Atomic # 16 Polarization: 45.22 SS G_CDS: -0.56 Total: 44.67 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.32 -7.17 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.743 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds