Wall clock time and date at job start Mon Mar 30 2020 03:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46998 * 2 1 4 4 C 1.53006 * 109.47128 * 119.99939 * 2 1 3 5 5 H 1.09003 * 109.46970 * 304.72373 * 4 2 1 6 6 C 1.50696 * 109.46839 * 64.72453 * 4 2 1 7 7 H 1.07998 * 120.00555 * 54.56698 * 6 4 2 8 8 C 1.37880 * 120.00036 * 234.56736 * 6 4 2 9 9 N 1.31507 * 120.00317 * 184.82338 * 8 6 4 10 10 Si 1.86801 * 119.99821 * 4.82266 * 8 6 4 11 11 H 1.48496 * 109.47227 * 84.74007 * 10 8 6 12 12 H 1.48500 * 109.47274 * 204.74099 * 10 8 6 13 13 H 1.48504 * 109.47271 * 324.74074 * 10 8 6 14 14 C 1.52999 * 109.47194 * 184.72223 * 4 2 1 15 15 H 1.09008 * 110.28040 * 59.30071 * 14 4 2 16 16 C 1.54157 * 110.32273 * 181.41451 * 14 4 2 17 17 C 1.53869 * 108.70869 * 146.90957 * 16 14 4 18 18 C 1.55048 * 106.62526 * 312.82458 * 17 16 14 19 19 S 1.82916 * 110.40417 * 297.13071 * 14 4 2 20 20 O 1.42101 * 109.35344 * 352.32360 * 19 14 4 21 21 O 1.42100 * 109.35530 * 125.52982 * 19 14 4 22 22 H 1.09001 * 109.47038 * 304.93629 * 1 2 3 23 23 H 1.08995 * 109.46940 * 64.93983 * 1 2 3 24 24 H 1.09000 * 109.46737 * 184.94076 * 1 2 3 25 25 H 1.08997 * 109.47575 * 239.99944 * 2 1 3 26 26 H 1.09003 * 109.46760 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47279 * 299.99856 * 3 2 1 28 28 H 1.09003 * 109.46984 * 60.00052 * 3 2 1 29 29 H 0.97003 * 119.99944 * 179.97438 * 9 8 6 30 30 H 1.08996 * 109.64941 * 266.76941 * 16 14 4 31 31 H 1.09003 * 109.64612 * 27.05959 * 16 14 4 32 32 H 1.09003 * 110.02735 * 72.11350 * 17 16 14 33 33 H 1.08997 * 110.03299 * 193.48227 * 17 16 14 34 34 H 1.09002 * 110.79110 * 160.70044 * 18 17 16 35 35 H 1.09004 * 110.78761 * 283.97048 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.6092 -0.2586 2.1373 6 6 1.6355 -2.1718 1.1921 7 1 1.8971 -2.7720 0.3332 8 6 0.9314 -2.7328 2.2364 9 7 0.6608 -4.0197 2.2308 10 14 0.3620 -1.6648 3.6593 11 1 -0.9318 -1.0247 3.3109 12 1 0.1878 -2.5059 4.8707 13 1 1.3774 -0.6149 3.9275 14 6 3.5654 -0.6192 1.3101 15 1 3.8733 0.4260 1.3394 16 6 4.1035 -1.3705 2.5440 17 6 5.4778 -1.9692 2.1968 18 6 5.3225 -2.6682 0.8216 19 16 4.3188 -1.4633 -0.1272 20 8 3.3095 -2.1560 -0.8487 21 8 5.1825 -0.5605 -0.8040 22 1 -0.3633 0.5885 0.8425 23 1 -0.3633 0.4353 -0.9309 24 1 -0.3633 -1.0239 0.0885 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 0.1657 -4.4144 2.9657 30 1 4.2060 -0.6776 3.3791 31 1 3.4139 -2.1696 2.8161 32 1 6.2240 -1.1773 2.1309 33 1 5.7708 -2.6956 2.9547 34 1 6.2946 -2.8173 0.3515 35 1 4.7960 -3.6168 0.9271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260708424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:18 Heat of formation + Delta-G solvation = -105.305350 kcal Electronic energy + Delta-G solvation = -17815.889842 eV Core-core repulsion = 15132.961696 eV Total energy + Delta-G solvation = -2682.928145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.04173 -37.76128 -36.90755 -35.97407 -34.24562 -31.58915 -28.84070 -27.67274 -25.86224 -23.81981 -21.88364 -20.70936 -19.45375 -19.21510 -17.41944 -17.10981 -16.48373 -15.99792 -15.51618 -15.22301 -14.91247 -14.76692 -14.45027 -14.00005 -13.85418 -13.47004 -13.05902 -12.97245 -12.87396 -12.72365 -12.64747 -12.54080 -12.27182 -11.98073 -11.73469 -11.46626 -11.38861 -11.24841 -11.16468 -10.89989 -10.55990 -10.19175 -8.10900 -6.14623 -0.57489 1.38092 1.42834 1.48642 1.91926 2.43743 2.88573 3.19351 3.34015 3.67864 3.99656 4.01473 4.07435 4.24367 4.31190 4.44763 4.50585 4.62578 4.80678 4.87181 4.91306 5.00555 5.03002 5.09049 5.18222 5.19952 5.26602 5.45730 5.54822 5.65592 5.67384 5.84355 6.55295 7.16624 7.51181 9.03610 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.013383 C = 0.010701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.252619 B = 2091.710507 C = 2615.906719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.121 4.121 3 C -0.157 4.157 4 C 0.036 3.964 5 H 0.058 0.942 6 C -0.512 4.512 7 H 0.082 0.918 8 C 0.032 3.968 9 N -0.945 5.945 10 Si 0.904 3.096 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.229 1.229 14 C -0.521 4.521 15 H 0.147 0.853 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.577 4.577 19 S 2.363 3.637 20 O -0.962 6.962 21 O -0.989 6.989 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.261 0.739 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 8.160 2.475 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.140 4.140 3 C -0.214 4.214 4 C 0.016 3.984 5 H 0.076 0.924 6 C -0.551 4.551 7 H 0.100 0.900 8 C -0.165 4.165 9 N -0.586 5.586 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.152 1.152 14 C -0.635 4.635 15 H 0.165 0.835 16 C -0.158 4.158 17 C -0.150 4.150 18 C -0.709 4.709 19 S 2.553 3.447 20 O -0.959 6.959 21 O -0.986 6.986 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.169 0.831 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.277 8.177 1.541 11.737 hybrid contribution -0.752 -0.363 1.229 1.486 sum 7.525 7.814 2.770 11.196 Atomic orbital electron populations 1.21616 0.95185 1.01165 1.00741 1.21574 0.97274 0.95828 0.99294 1.22080 1.00903 0.95696 1.02735 1.19055 0.87807 0.95677 0.95854 0.92383 1.21820 1.34011 0.94547 1.04676 0.90012 1.25729 0.95841 0.95142 0.99819 1.70045 1.42201 1.12712 1.33609 0.86412 0.80317 0.80442 0.79850 1.20275 1.22413 1.15192 1.30253 1.08330 1.10494 1.14403 0.83527 1.22149 0.96347 1.00734 0.96520 1.22271 0.97539 1.00970 0.94211 1.30462 1.14669 1.14593 1.11199 1.09589 0.76537 0.78748 0.79827 1.93554 1.57033 1.73482 1.71865 1.93475 1.67352 1.64360 1.73455 0.93025 0.92366 0.94115 0.92647 0.92587 0.91808 0.91258 0.92982 0.87900 0.90436 0.87610 0.87126 0.83100 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.08 71.98 0.65 -4.39 16 2 C -0.12 -4.78 2.20 -10.79 -0.02 -4.81 16 3 C -0.16 -4.85 8.73 71.98 0.63 -4.22 16 4 C 0.04 1.50 1.20 -11.54 -0.01 1.48 16 5 H 0.06 2.36 4.52 -2.39 -0.01 2.35 16 6 C -0.51 -26.33 5.60 25.60 0.14 -26.19 16 7 H 0.08 4.86 5.50 -2.91 -0.02 4.84 16 8 C 0.03 1.71 4.87 84.66 0.41 2.12 16 9 N -0.95 -55.81 13.96 21.45 0.30 -55.51 16 10 Si 0.90 40.24 26.90 68.60 1.85 42.08 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.23 -8.86 6.39 99.48 0.64 -8.23 16 14 C -0.52 -17.96 2.55 30.99 0.08 -17.89 16 15 H 0.15 4.12 6.36 -2.38 -0.02 4.11 16 16 C -0.12 -3.62 5.80 31.28 0.18 -3.43 16 17 C -0.11 -2.67 6.48 31.59 0.20 -2.47 16 18 C -0.58 -16.62 7.31 72.68 0.53 -16.09 16 19 S 2.36 88.13 5.18 -56.49 -0.29 87.84 16 20 O -0.96 -45.53 12.72 -127.49 -1.62 -47.15 16 21 O -0.99 -38.82 18.15 -127.49 -2.31 -41.13 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.04 1.83 7.22 -2.39 -0.02 1.82 16 25 H 0.06 2.44 5.91 -2.39 -0.01 2.43 16 26 H 0.06 1.63 6.34 -2.39 -0.02 1.62 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.08 2.90 5.84 -2.39 -0.01 2.88 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.15 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.13 4.11 8.14 -2.38 -0.02 4.09 16 Total: -1.00 -68.77 274.59 1.71 -67.05 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 1.00 Total: 22.70 kcal Atomic # 6 Polarization: -78.68 SS G_CDS: 2.80 Total: -75.88 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.30 Total: -55.51 kcal Atomic # 8 Polarization: -84.35 SS G_CDS: -3.94 Total: -88.28 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.85 Total: 42.08 kcal Atomic # 16 Polarization: 88.13 SS G_CDS: -0.29 Total: 87.84 kcal Total: -68.77 1.71 -67.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.252 kcal (2) G-P(sol) polarization free energy of solvation -68.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds