Wall clock time and date at job start Mon Mar 30 2020 03:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46910 * 2 1 4 4 C 1.53003 * 109.46974 * 119.99801 * 2 1 3 5 5 H 1.08993 * 109.47301 * 295.72918 * 4 2 1 6 6 C 1.50702 * 109.46914 * 55.72964 * 4 2 1 7 7 H 1.08000 * 119.99920 * 64.75938 * 6 4 2 8 8 C 1.37881 * 119.99843 * 244.76138 * 6 4 2 9 9 N 1.31508 * 119.99953 * 171.24606 * 8 6 4 10 10 Si 1.86804 * 119.99764 * 351.24266 * 8 6 4 11 11 H 1.48495 * 109.47259 * 90.56525 * 10 8 6 12 12 H 1.48506 * 109.46563 * 210.56506 * 10 8 6 13 13 H 1.48502 * 109.47000 * 330.55846 * 10 8 6 14 14 C 1.53002 * 109.47122 * 175.72620 * 4 2 1 15 15 H 1.09006 * 110.69934 * 56.68000 * 14 4 2 16 16 C 1.55049 * 110.95581 * 293.24370 * 14 4 2 17 17 C 1.53872 * 106.62488 * 199.22044 * 16 14 4 18 18 C 1.54170 * 108.70333 * 47.18198 * 17 16 14 19 19 S 1.82919 * 105.08498 * 332.09025 * 18 17 16 20 20 O 1.42101 * 109.35392 * 248.72798 * 19 18 17 21 21 O 1.42093 * 109.35360 * 115.52478 * 19 18 17 22 22 H 1.08998 * 109.47488 * 303.52836 * 1 2 3 23 23 H 1.09000 * 109.46959 * 63.53114 * 1 2 3 24 24 H 1.09000 * 109.47105 * 183.52255 * 1 2 3 25 25 H 1.08994 * 109.47534 * 240.00152 * 2 1 3 26 26 H 1.09007 * 109.47361 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47493 * 299.99997 * 3 2 1 28 28 H 1.08998 * 109.47319 * 60.00013 * 3 2 1 29 29 H 0.97001 * 119.99560 * 180.02562 * 9 8 6 30 30 H 1.09005 * 110.02511 * 318.51800 * 16 14 4 31 31 H 1.09003 * 110.02538 * 79.92809 * 16 14 4 32 32 H 1.08998 * 109.64497 * 167.02920 * 17 16 14 33 33 H 1.08997 * 109.64501 * 287.45883 * 17 16 14 34 34 H 1.09002 * 110.31440 * 213.19071 * 18 17 16 35 35 H 1.08994 * 110.32165 * 90.99275 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7405 -0.1651 2.1376 6 6 1.4531 -2.1082 1.3033 7 1 1.7060 -2.8316 0.5423 8 6 0.5931 -2.4536 2.3243 9 7 -0.0524 -3.5985 2.2812 10 14 0.3452 -1.2952 3.7687 11 1 -0.7847 -0.3765 3.4781 12 1 0.0404 -2.0843 4.9892 13 1 1.5830 -0.5042 3.9869 14 6 3.5662 -0.8150 1.1967 15 1 4.0100 0.1757 1.0981 16 6 4.0254 -1.7412 0.0412 17 6 5.4719 -2.1582 0.3595 18 6 5.5446 -2.6054 1.8331 19 16 4.2166 -1.6745 2.6792 20 8 4.7967 -0.7216 3.5594 21 8 3.2384 -2.5845 3.1630 22 1 -0.3634 0.5676 0.8566 23 1 -0.3633 0.4580 -0.9199 24 1 -0.3633 -1.0257 0.0631 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 -0.6577 -3.8412 2.9993 30 1 3.3851 -2.6220 -0.0081 31 1 3.9921 -1.2016 -0.9053 32 1 5.7665 -2.9834 -0.2888 33 1 6.1404 -1.3118 0.2020 34 1 6.5154 -2.3508 2.2585 35 1 5.3650 -3.6775 1.9126 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260708434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:27 Heat of formation + Delta-G solvation = -79.508964 kcal Electronic energy + Delta-G solvation = -17743.493316 eV Core-core repulsion = 15061.683786 eV Total energy + Delta-G solvation = -2681.809530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.52657 -36.08663 -35.15448 -34.59904 -32.12695 -30.20701 -27.14755 -26.18719 -24.33033 -22.09043 -21.23689 -18.49363 -17.87185 -17.03844 -16.01455 -15.76901 -14.92491 -14.33278 -13.91408 -13.63671 -13.44526 -13.19580 -12.99999 -12.49297 -12.16737 -11.89660 -11.57758 -11.50253 -11.28784 -11.09105 -11.04917 -10.70777 -10.61308 -10.49914 -10.26629 -10.10889 -9.82218 -9.60270 -9.54049 -8.93067 -8.86098 -8.29935 -5.98416 -3.96535 0.87785 3.33956 3.41637 3.48338 3.51844 4.34823 4.54756 4.69768 4.96175 5.17985 5.26954 5.29768 5.41104 5.57308 5.79461 5.83787 5.89154 5.93178 6.00009 6.08335 6.26441 6.32027 6.43198 6.54437 6.57274 6.69910 6.72571 6.85096 7.07696 7.27080 7.40228 7.76106 8.53562 9.02206 9.69545 11.14955 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.014351 C = 0.011069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.359632 B = 1950.570847 C = 2528.896888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.076 4.076 3 C -0.154 4.154 4 C 0.040 3.960 5 H 0.042 0.958 6 C -0.519 4.519 7 H 0.083 0.917 8 C 0.116 3.884 9 N -0.889 5.889 10 Si 0.871 3.129 11 H -0.284 1.284 12 H -0.287 1.287 13 H -0.275 1.275 14 C -0.521 4.521 15 H 0.113 0.887 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.608 4.608 19 S 2.369 3.631 20 O -0.974 6.974 21 O -0.884 6.884 22 H 0.037 0.963 23 H 0.030 0.970 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 4.770 -5.016 10.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.211 4.211 4 C 0.020 3.980 5 H 0.060 0.940 6 C -0.556 4.556 7 H 0.101 0.899 8 C -0.088 4.088 9 N -0.525 5.525 10 Si 0.701 3.299 11 H -0.211 1.211 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.633 4.633 15 H 0.131 0.869 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.735 4.735 19 S 2.553 3.447 20 O -0.971 6.971 21 O -0.881 6.881 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.031 4.623 -3.919 10.061 hybrid contribution 0.337 0.567 0.170 0.681 sum 8.368 5.190 -3.749 10.537 Atomic orbital electron populations 1.21761 0.95652 1.03428 0.98600 1.21133 0.95687 0.93222 0.99546 1.22024 1.00371 0.98218 1.00486 1.19009 0.85461 0.98321 0.95208 0.94041 1.20679 1.28076 0.94769 1.12084 0.89932 1.24726 0.93572 0.94215 0.96312 1.69848 1.27271 1.22475 1.32896 0.87031 0.77638 0.80991 0.84253 1.21106 1.21357 1.20050 1.30516 1.09932 1.07617 1.15262 0.86894 1.22335 0.94113 1.00704 0.98037 1.21875 0.98467 1.01722 0.92787 1.30594 1.18814 1.14768 1.09368 1.09831 0.77344 0.78278 0.79235 1.93501 1.78855 1.61917 1.62800 1.93720 1.54178 1.62343 1.77850 0.94409 0.95058 0.90067 0.91863 0.93300 0.93920 0.93510 0.92758 0.87479 0.89844 0.90147 0.91159 0.86254 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.96 37.16 0.33 -2.31 16 2 C -0.08 -1.40 2.41 -90.62 -0.22 -1.62 16 3 C -0.15 -2.42 8.95 37.16 0.33 -2.09 16 4 C 0.04 0.86 1.24 -91.77 -0.11 0.74 16 5 H 0.04 0.96 4.61 -51.93 -0.24 0.72 16 6 C -0.52 -13.05 4.76 -34.44 -0.16 -13.22 16 7 H 0.08 2.18 6.41 -52.49 -0.34 1.84 16 8 C 0.12 3.25 4.56 -17.82 -0.08 3.17 16 9 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 10 Si 0.87 22.81 25.56 -169.99 -4.35 18.46 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 13 H -0.27 -7.03 6.51 56.52 0.37 -6.66 16 14 C -0.52 -9.39 2.77 -25.65 -0.07 -9.46 16 15 H 0.11 1.77 6.48 -51.93 -0.34 1.43 16 16 C -0.11 -1.72 5.08 -25.19 -0.13 -1.85 16 17 C -0.11 -1.40 6.40 -25.67 -0.16 -1.57 16 18 C -0.61 -8.76 7.26 37.77 0.27 -8.49 16 19 S 2.37 46.79 5.76 -107.50 -0.62 46.17 16 20 O -0.97 -21.38 18.15 -57.71 -1.05 -22.42 16 21 O -0.88 -21.39 13.19 -57.71 -0.76 -22.15 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.78 6.93 -51.93 -0.36 1.42 16 25 H 0.06 1.12 7.09 -51.93 -0.37 0.75 16 26 H 0.05 0.70 6.49 -51.92 -0.34 0.36 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.11 1.84 5.82 -51.93 -0.30 1.54 16 31 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 274.70 15.07 4.14 4.14 Total: -1.00 -31.66 274.70 -7.09 -38.75 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.23 Total: -0.60 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 0.00 Total: -36.70 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.77 Total: -25.66 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.81 Total: -44.57 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.35 Total: 18.46 kcal Atomic # 16 Polarization: 46.79 SS G_CDS: -0.62 Total: 46.17 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.66 -7.09 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.757 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds