Wall clock time and date at job start Mon Mar 30 2020 03:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46910 * 2 1 4 4 C 1.53003 * 109.46974 * 119.99801 * 2 1 3 5 5 H 1.08993 * 109.47301 * 295.72918 * 4 2 1 6 6 C 1.50702 * 109.46914 * 55.72964 * 4 2 1 7 7 H 1.08000 * 119.99920 * 64.75938 * 6 4 2 8 8 C 1.37881 * 119.99843 * 244.76138 * 6 4 2 9 9 N 1.31508 * 119.99953 * 171.24606 * 8 6 4 10 10 Si 1.86804 * 119.99764 * 351.24266 * 8 6 4 11 11 H 1.48495 * 109.47259 * 90.56525 * 10 8 6 12 12 H 1.48506 * 109.46563 * 210.56506 * 10 8 6 13 13 H 1.48502 * 109.47000 * 330.55846 * 10 8 6 14 14 C 1.53002 * 109.47122 * 175.72620 * 4 2 1 15 15 H 1.09006 * 110.69934 * 56.68000 * 14 4 2 16 16 C 1.55049 * 110.95581 * 293.24370 * 14 4 2 17 17 C 1.53872 * 106.62488 * 199.22044 * 16 14 4 18 18 C 1.54170 * 108.70333 * 47.18198 * 17 16 14 19 19 S 1.82919 * 105.08498 * 332.09025 * 18 17 16 20 20 O 1.42101 * 109.35392 * 248.72798 * 19 18 17 21 21 O 1.42093 * 109.35360 * 115.52478 * 19 18 17 22 22 H 1.08998 * 109.47488 * 303.52836 * 1 2 3 23 23 H 1.09000 * 109.46959 * 63.53114 * 1 2 3 24 24 H 1.09000 * 109.47105 * 183.52255 * 1 2 3 25 25 H 1.08994 * 109.47534 * 240.00152 * 2 1 3 26 26 H 1.09007 * 109.47361 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47493 * 299.99997 * 3 2 1 28 28 H 1.08998 * 109.47319 * 60.00013 * 3 2 1 29 29 H 0.97001 * 119.99560 * 180.02562 * 9 8 6 30 30 H 1.09005 * 110.02511 * 318.51800 * 16 14 4 31 31 H 1.09003 * 110.02538 * 79.92809 * 16 14 4 32 32 H 1.08998 * 109.64497 * 167.02920 * 17 16 14 33 33 H 1.08997 * 109.64501 * 287.45883 * 17 16 14 34 34 H 1.09002 * 110.31440 * 213.19071 * 18 17 16 35 35 H 1.08994 * 110.32165 * 90.99275 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7405 -0.1651 2.1376 6 6 1.4531 -2.1082 1.3033 7 1 1.7060 -2.8316 0.5423 8 6 0.5931 -2.4536 2.3243 9 7 -0.0524 -3.5985 2.2812 10 14 0.3452 -1.2952 3.7687 11 1 -0.7847 -0.3765 3.4781 12 1 0.0404 -2.0843 4.9892 13 1 1.5830 -0.5042 3.9869 14 6 3.5662 -0.8150 1.1967 15 1 4.0100 0.1757 1.0981 16 6 4.0254 -1.7412 0.0412 17 6 5.4719 -2.1582 0.3595 18 6 5.5446 -2.6054 1.8331 19 16 4.2166 -1.6745 2.6792 20 8 4.7967 -0.7216 3.5594 21 8 3.2384 -2.5845 3.1630 22 1 -0.3634 0.5676 0.8566 23 1 -0.3633 0.4580 -0.9199 24 1 -0.3633 -1.0257 0.0631 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 -0.6577 -3.8412 2.9993 30 1 3.3851 -2.6220 -0.0081 31 1 3.9921 -1.2016 -0.9053 32 1 5.7665 -2.9834 -0.2888 33 1 6.1404 -1.3118 0.2020 34 1 6.5154 -2.3508 2.2585 35 1 5.3650 -3.6775 1.9126 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260708434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:26 Heat of formation + Delta-G solvation = -102.778177 kcal Electronic energy + Delta-G solvation = -17744.502345 eV Core-core repulsion = 15061.683786 eV Total energy + Delta-G solvation = -2682.818559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.03247 -37.67932 -36.73476 -35.92531 -34.12948 -31.67844 -28.72115 -27.56943 -25.88840 -23.67916 -22.50920 -20.06309 -19.43699 -18.92262 -17.49190 -17.18910 -16.54265 -16.09734 -15.33482 -15.12943 -14.93400 -14.69425 -14.62568 -14.08916 -13.77007 -13.26911 -13.16151 -12.94075 -12.73413 -12.69854 -12.58500 -12.42380 -12.11437 -11.99974 -11.83190 -11.66887 -11.34143 -11.21529 -11.15157 -10.71279 -10.50150 -10.27569 -8.14715 -6.06215 -0.57409 1.24844 1.30338 1.35398 1.98132 2.43671 2.95383 3.31009 3.36730 3.72238 3.94162 4.06260 4.09789 4.34472 4.42469 4.48342 4.59926 4.70607 4.82373 4.90255 4.98805 4.99250 5.09963 5.15999 5.22884 5.30474 5.37741 5.47880 5.54264 5.71176 5.77530 5.91932 6.44492 6.95109 7.60155 9.03018 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.014351 C = 0.011069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.359632 B = 1950.570847 C = 2528.896888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.150 4.150 4 C 0.029 3.971 5 H 0.020 0.980 6 C -0.482 4.482 7 H 0.067 0.933 8 C 0.072 3.928 9 N -0.939 5.939 10 Si 0.890 3.110 11 H -0.271 1.271 12 H -0.304 1.304 13 H -0.272 1.272 14 C -0.513 4.513 15 H 0.147 0.853 16 C -0.112 4.112 17 C -0.107 4.107 18 C -0.574 4.574 19 S 2.327 3.673 20 O -1.009 7.009 21 O -0.948 6.948 22 H 0.027 0.973 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.256 0.744 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.211 6.482 -7.746 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.094 4.094 3 C -0.207 4.207 4 C 0.009 3.991 5 H 0.039 0.961 6 C -0.519 4.519 7 H 0.085 0.915 8 C -0.127 4.127 9 N -0.580 5.580 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.232 1.232 13 H -0.197 1.197 14 C -0.627 4.627 15 H 0.165 0.835 16 C -0.150 4.150 17 C -0.145 4.145 18 C -0.706 4.706 19 S 2.519 3.481 20 O -1.006 7.006 21 O -0.945 6.945 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.168 0.832 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.835 6.392 -6.610 14.211 hybrid contribution -0.414 0.036 0.908 0.999 sum 10.421 6.428 -5.702 13.506 Atomic orbital electron populations 1.21742 0.96710 1.01269 0.99805 1.21080 0.94858 0.95291 0.98144 1.21977 1.01673 0.95709 1.01372 1.19058 0.88030 0.95875 0.96109 0.96149 1.20920 1.25204 0.96209 1.09611 0.91471 1.25146 0.94783 0.94707 0.98068 1.69939 1.29843 1.24511 1.33703 0.86702 0.78055 0.80416 0.82850 1.19660 1.23166 1.19720 1.30304 1.07097 1.10008 1.15277 0.83544 1.22374 0.95350 0.99212 0.98087 1.22017 0.97057 1.04219 0.91228 1.30308 1.16598 1.13821 1.09886 1.10525 0.78607 0.78434 0.80524 1.93448 1.79205 1.62922 1.65006 1.93659 1.57558 1.63523 1.79763 0.95413 0.91942 0.93629 0.90302 0.91230 0.91453 0.94328 0.93489 0.90197 0.86569 0.87197 0.87656 0.83152 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.96 71.98 0.64 -4.50 16 2 C -0.07 -2.53 2.41 -10.79 -0.03 -2.55 16 3 C -0.15 -4.08 8.95 71.98 0.64 -3.43 16 4 C 0.03 1.22 1.24 -11.54 -0.01 1.20 16 5 H 0.02 0.94 4.61 -2.39 -0.01 0.93 16 6 C -0.48 -24.62 4.76 25.60 0.12 -24.50 16 7 H 0.07 3.61 6.41 -2.91 -0.02 3.59 16 8 C 0.07 4.15 4.56 84.66 0.39 4.54 16 9 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 10 Si 0.89 48.19 25.56 68.60 1.75 49.95 16 11 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.30 -17.08 7.11 99.48 0.71 -16.37 16 13 H -0.27 -14.35 6.51 99.48 0.65 -13.70 16 14 C -0.51 -17.01 2.77 31.30 0.09 -16.92 16 15 H 0.15 3.90 6.48 -2.38 -0.02 3.88 16 16 C -0.11 -2.90 5.08 31.59 0.16 -2.74 16 17 C -0.11 -2.07 6.40 31.28 0.20 -1.87 16 18 C -0.57 -14.20 7.26 72.38 0.53 -13.67 16 19 S 2.33 89.73 5.76 -56.49 -0.33 89.40 16 20 O -1.01 -43.79 18.15 -127.49 -2.31 -46.10 16 21 O -0.95 -47.32 13.19 -127.49 -1.68 -49.00 16 22 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 2.00 6.93 -2.39 -0.02 1.99 16 25 H 0.08 2.47 7.09 -2.39 -0.02 2.45 16 26 H 0.07 1.60 6.49 -2.38 -0.02 1.58 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.08 2.56 5.82 -2.38 -0.01 2.54 16 31 H 0.12 2.34 7.70 -2.39 -0.02 2.32 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.14 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -74.36 274.70 1.47 -72.89 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.01 Total: 5.82 kcal Atomic # 6 Polarization: -67.18 SS G_CDS: 2.73 Total: -64.45 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.30 Total: -58.51 kcal Atomic # 8 Polarization: -91.11 SS G_CDS: -3.99 Total: -95.10 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.75 Total: 49.95 kcal Atomic # 16 Polarization: 89.73 SS G_CDS: -0.33 Total: 89.40 kcal Total: -74.36 1.47 -72.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260708434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.886 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds