Wall clock time and date at job start Mon Mar 30 2020 03:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47259 * 120.00026 * 2 1 3 5 5 H 1.08998 * 110.28233 * 297.46002 * 4 2 1 6 6 C 1.54168 * 110.31669 * 59.57224 * 4 2 1 7 7 C 1.54017 * 108.62828 * 91.17702 * 6 4 2 8 8 H 1.08992 * 109.99384 * 287.72817 * 7 6 4 9 9 C 1.53002 * 110.02862 * 166.38176 * 7 6 4 10 10 C 1.50696 * 109.47287 * 176.26085 * 9 7 6 11 11 H 1.08004 * 119.99924 * 0.02562 * 10 9 7 12 12 C 1.37883 * 120.00355 * 180.02562 * 10 9 7 13 13 N 1.31517 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00174 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47503 * 89.99725 * 14 12 10 16 16 H 1.48500 * 109.47055 * 210.00058 * 14 12 10 17 17 H 1.48507 * 109.46953 * 329.99891 * 14 12 10 18 18 C 1.55047 * 106.70007 * 47.04832 * 7 6 4 19 19 S 1.82913 * 110.31800 * 175.34274 * 4 2 1 20 20 O 1.42094 * 109.35446 * 356.51968 * 19 4 2 21 21 O 1.42108 * 109.35355 * 129.58915 * 19 4 2 22 22 H 1.09002 * 109.46600 * 299.99814 * 1 2 3 23 23 H 1.09000 * 109.47380 * 60.00162 * 1 2 3 24 24 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46600 * 240.00185 * 2 1 3 26 26 H 1.09000 * 109.46976 * 185.61467 * 3 2 1 27 27 H 1.08996 * 109.47237 * 305.61531 * 3 2 1 28 28 H 1.08998 * 109.47361 * 65.61504 * 3 2 1 29 29 H 1.09004 * 109.64316 * 210.94408 * 6 4 2 30 30 H 1.08992 * 109.64988 * 331.23886 * 6 4 2 31 31 H 1.09003 * 109.47469 * 296.26235 * 9 7 6 32 32 H 1.09000 * 109.47188 * 56.26284 * 9 7 6 33 33 H 0.96999 * 119.99947 * 180.02562 * 13 12 10 34 34 H 1.08997 * 110.79286 * 199.34312 * 18 7 6 35 35 H 1.09004 * 110.78994 * 75.88019 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7215 -0.1923 2.1474 6 6 1.5282 -2.1752 1.2743 7 6 2.5654 -3.0741 0.5755 8 1 2.5461 -2.8988 -0.5000 9 6 2.2679 -4.5454 0.8715 10 6 3.2328 -5.4164 0.1090 11 1 3.9835 -4.9655 -0.5232 12 6 3.1573 -6.7888 0.2184 13 7 2.2428 -7.3377 0.9878 14 14 4.3538 -7.8683 -0.7263 15 1 5.5587 -8.1169 0.1052 16 1 3.7018 -9.1620 -1.0525 17 1 4.7519 -7.1839 -1.9827 18 6 3.9515 -2.6863 1.1520 19 16 3.8637 -0.8563 1.2046 20 8 4.3452 -0.3263 -0.0227 21 8 4.4006 -0.3914 2.4354 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1253 1.4442 -0.1005 27 1 1.5969 1.9845 -0.8354 28 1 1.7611 1.9265 0.9360 29 1 1.3986 -2.5003 2.3067 30 1 0.5745 -2.2372 0.7503 31 1 2.3778 -4.7306 1.9401 32 1 1.2481 -4.7786 0.5654 33 1 2.1899 -8.3032 1.0651 34 1 4.7520 -3.0164 0.4900 35 1 4.0824 -3.0963 2.1535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260711004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:15 Heat of formation + Delta-G solvation = -98.728507 kcal Electronic energy + Delta-G solvation = -16806.575562 eV Core-core repulsion = 14123.932610 eV Total energy + Delta-G solvation = -2682.642952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.93618 -36.65707 -35.79865 -34.96479 -32.55479 -29.24541 -27.40372 -27.30955 -24.89198 -22.59358 -20.60564 -19.55081 -18.46689 -16.70639 -16.36593 -15.91206 -15.53876 -14.82012 -14.52456 -14.15308 -13.75543 -13.21069 -12.85432 -12.65501 -12.26589 -12.15569 -11.93044 -11.89844 -11.70981 -11.55625 -11.25843 -11.13644 -10.98147 -10.83158 -10.70436 -10.57452 -10.32469 -10.01796 -9.73394 -9.30616 -9.17370 -8.46162 -6.10775 -4.13442 0.41114 2.87637 3.26285 3.33433 3.36290 3.89240 4.16877 4.37276 4.64442 4.74780 4.96244 5.12917 5.19162 5.23746 5.27354 5.46806 5.53828 5.60184 5.64068 5.79723 5.81657 5.95911 6.02157 6.14165 6.26039 6.30318 6.48584 6.53039 6.72095 7.48545 7.58458 7.86422 8.27247 8.91974 9.51435 11.00309 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.006636 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.045725 B = 4218.215010 C = 4598.206846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 C -0.176 4.176 4 C -0.547 4.547 5 H 0.134 0.866 6 C -0.113 4.113 7 C -0.080 4.080 8 H 0.082 0.918 9 C 0.037 3.963 10 C -0.523 4.523 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.549 4.549 19 S 2.360 3.640 20 O -0.943 6.943 21 O -0.957 6.957 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.262 0.738 34 H 0.137 0.863 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 12.840 -0.232 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.233 4.233 4 C -0.657 4.657 5 H 0.152 0.848 6 C -0.151 4.151 7 C -0.100 4.100 8 H 0.101 0.899 9 C -0.001 4.001 10 C -0.561 4.561 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.681 4.681 19 S 2.548 3.452 20 O -0.940 6.940 21 O -0.954 6.954 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.125 13.417 -0.150 13.585 hybrid contribution 0.050 -1.314 -0.347 1.360 sum -2.075 12.103 -0.497 12.290 Atomic orbital electron populations 1.21896 0.94178 1.02498 1.01642 1.20743 0.97051 0.95551 0.95372 1.22224 1.02970 0.95782 1.02327 1.30381 1.24113 1.04689 1.06531 0.84787 1.22327 1.01382 0.88013 1.03351 1.22020 0.88050 1.00518 0.99413 0.89944 1.19069 0.97413 0.86049 0.97543 1.21206 1.16206 0.91100 1.27567 0.92422 1.25004 0.95640 0.98261 0.95428 1.69946 1.33799 1.11029 1.38527 0.86612 0.81150 0.80022 0.80377 1.20616 1.21181 1.19777 1.30496 1.07004 1.19664 1.10969 1.09902 0.79271 0.80916 0.75126 1.93543 1.78224 1.77564 1.44686 1.93553 1.76663 1.80220 1.44931 0.92684 0.92438 0.91574 0.89279 0.90848 0.91491 0.92563 0.90091 0.88877 0.95855 0.95698 0.92870 0.84516 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.94 37.16 0.33 -1.13 16 2 C -0.07 -0.81 2.16 -90.62 -0.20 -1.00 16 3 C -0.18 -2.01 8.88 37.16 0.33 -1.68 16 4 C -0.55 -6.91 2.76 -26.12 -0.07 -6.98 16 5 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 6 C -0.11 -1.57 5.17 -25.59 -0.13 -1.70 16 7 C -0.08 -1.40 2.55 -89.01 -0.23 -1.63 16 8 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 9 C 0.04 0.86 4.46 -27.88 -0.12 0.73 16 10 C -0.52 -13.67 8.66 -34.44 -0.30 -13.96 16 11 H 0.06 1.46 7.45 -52.48 -0.39 1.07 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 14 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.55 -9.03 6.18 38.24 0.24 -8.79 16 19 S 2.36 35.92 5.55 -107.50 -0.60 35.32 16 20 O -0.94 -16.23 15.29 -57.73 -0.88 -17.11 16 21 O -0.96 -17.14 18.15 -57.73 -1.05 -18.18 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.68 6.05 -51.93 -0.31 0.37 16 25 H 0.09 1.12 7.99 -51.93 -0.41 0.70 16 26 H 0.07 0.95 5.90 -51.93 -0.31 0.65 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 30 H 0.09 1.20 5.66 -51.93 -0.29 0.91 16 31 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.14 2.25 7.89 -51.93 -0.41 1.84 16 35 H 0.13 2.15 8.08 -51.93 -0.42 1.73 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -31.74 288.89 -8.19 -39.93 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.49 Total: -0.68 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: -0.25 Total: -34.65 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.74 Total: -24.84 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.93 Total: -35.30 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 35.92 SS G_CDS: -0.60 Total: 35.32 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.74 -8.19 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260711004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.798 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds